Wall clock time and date at job start Mon Mar 30 2020 05:40:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38291 * 119.94470 * 2 1 4 4 C 1.38118 * 120.06109 * 180.02562 * 3 2 1 5 5 C 1.38757 * 119.94366 * 359.97438 * 4 3 2 6 6 O 1.35893 * 120.05651 * 180.02562 * 5 4 3 7 7 C 1.38719 * 119.88466 * 359.72298 * 5 4 3 8 8 C 1.50698 * 120.02560 * 180.28171 * 7 5 4 9 9 H 1.08998 * 109.46953 * 174.94530 * 8 7 5 10 10 C 1.50693 * 109.47529 * 54.93728 * 8 7 5 11 11 H 1.07998 * 120.00737 * 274.73969 * 10 8 7 12 12 C 1.37882 * 119.99772 * 94.73360 * 10 8 7 13 13 N 1.31516 * 119.99984 * 5.77042 * 12 10 8 14 14 Si 1.86804 * 120.00122 * 185.76753 * 12 10 8 15 15 H 1.48499 * 109.46688 * 90.00144 * 14 12 10 16 16 H 1.48497 * 109.47206 * 210.00193 * 14 12 10 17 17 H 1.48498 * 109.47103 * 330.00212 * 14 12 10 18 18 C 1.53007 * 109.47145 * 294.94173 * 8 7 5 19 19 C 1.52999 * 117.49610 * 253.92283 * 18 8 7 20 20 C 1.52994 * 117.50128 * 185.29779 * 18 8 7 21 21 C 1.38160 * 119.94142 * 0.55798 * 7 5 4 22 22 C 1.50699 * 119.96866 * 179.74663 * 21 7 5 23 23 H 1.09000 * 109.46578 * 270.01978 * 1 2 3 24 24 H 1.08991 * 109.47139 * 30.02156 * 1 2 3 25 25 H 1.09000 * 109.46484 * 150.02412 * 1 2 3 26 26 H 1.08009 * 119.96799 * 0.02562 * 3 2 1 27 27 H 1.07995 * 120.02970 * 180.02562 * 4 3 2 28 28 H 0.96705 * 114.00345 * 90.00309 * 6 5 4 29 29 H 0.96997 * 120.00031 * 180.02562 * 13 12 10 30 30 H 1.08999 * 115.54856 * 39.62285 * 18 8 7 31 31 H 1.09003 * 117.50029 * 359.97438 * 19 18 8 32 32 H 1.08999 * 117.49975 * 145.02023 * 19 18 8 33 33 H 1.08995 * 117.50173 * 214.97766 * 20 18 8 34 34 H 1.09001 * 117.49936 * 359.97345 * 20 18 8 35 35 H 1.09004 * 109.47060 * 275.44782 * 22 21 7 36 36 H 1.08998 * 109.47590 * 155.44775 * 22 21 7 37 37 H 1.09002 * 109.47701 * 35.44454 * 22 21 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1973 1.1983 0.0000 4 6 3.5785 1.2011 -0.0005 5 6 4.2735 0.0002 -0.0005 6 8 5.6324 0.0003 -0.0005 7 6 3.5788 -1.2005 0.0058 8 6 4.3304 -2.5066 0.0123 9 1 3.6244 -3.3316 0.1072 10 6 5.2888 -2.5290 1.1750 11 1 6.2698 -2.0887 1.0749 12 6 4.9131 -3.1117 2.3668 13 7 3.7650 -3.7471 2.4550 14 14 6.0349 -2.9988 3.8562 15 1 5.7029 -1.7784 4.6345 16 1 5.8450 -4.1981 4.7111 17 1 7.4487 -2.9300 3.4070 18 6 5.1117 -2.6519 -1.2953 19 6 4.5783 -3.6445 -2.3303 20 6 5.8448 -3.9728 -1.5372 21 6 2.1972 -1.1978 0.0005 22 6 1.4418 -2.5018 0.0016 23 1 -0.3632 0.0004 1.0277 24 1 -0.3633 0.8897 -0.5141 25 1 -0.3632 -0.8902 -0.5135 26 1 1.6558 2.1329 0.0004 27 1 4.1170 2.1372 -0.0001 28 1 6.0258 0.0002 0.8829 29 1 3.5006 -4.1567 3.2936 30 1 5.5806 -1.7407 -1.6664 31 1 3.6711 -4.1943 -2.0795 32 1 4.6963 -3.3864 -3.3827 33 1 6.7960 -3.9307 -2.0677 34 1 5.7710 -4.7382 -0.7646 35 1 1.3481 -2.8683 -1.0207 36 1 0.4492 -2.3465 0.4243 37 1 1.9818 -3.2341 0.6019 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260016026.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:40:45 Heat of formation + Delta-G solvation = -11.240860 kcal Electronic energy + Delta-G solvation = -18475.308693 eV Core-core repulsion = 15796.848633 eV Total energy + Delta-G solvation = -2678.460060 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.36750 -36.50612 -36.11061 -33.07819 -31.77598 -31.27681 -28.12343 -26.04906 -25.20175 -23.60175 -21.43883 -20.65279 -20.17953 -18.79619 -17.22408 -16.28441 -15.18640 -14.94199 -14.70008 -14.42451 -13.73946 -13.36903 -13.05206 -12.68317 -12.43697 -12.22964 -12.08080 -11.76173 -11.55802 -11.10183 -10.98690 -10.86303 -10.68063 -10.58337 -10.48896 -10.35323 -9.86992 -9.72078 -9.33705 -8.88918 -8.64986 -8.40419 -7.61375 -7.37732 -6.09663 -4.09788 2.10495 2.28763 3.25241 3.33429 3.35372 4.34070 4.45743 4.90110 5.24130 5.28347 5.47516 5.55745 5.72536 5.81858 5.91004 6.00821 6.01690 6.06514 6.18497 6.22367 6.32253 6.39273 6.45538 6.60909 6.63772 6.70275 6.93974 7.03327 7.07045 7.10079 7.17711 7.30969 7.39177 7.56897 7.77357 7.84721 8.01869 8.39274 8.68166 8.98725 9.52278 10.99094 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.017017 B = 0.010226 C = 0.009089 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1645.048093 B = 2737.509214 C = 3080.059744 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.109 4.109 3 C -0.134 4.134 4 C -0.161 4.161 5 C 0.107 3.893 6 O -0.494 6.494 7 C -0.042 4.042 8 C 0.091 3.909 9 H 0.077 0.923 10 C -0.498 4.498 11 H 0.061 0.939 12 C 0.066 3.934 13 N -0.887 5.887 14 Si 0.887 3.113 15 H -0.282 1.282 16 H -0.287 1.287 17 H -0.273 1.273 18 C -0.109 4.109 19 C -0.206 4.206 20 C -0.172 4.172 21 C -0.073 4.073 22 C -0.122 4.122 23 H 0.061 0.939 24 H 0.055 0.945 25 H 0.064 0.936 26 H 0.108 0.892 27 H 0.111 0.889 28 H 0.384 0.616 29 H 0.262 0.738 30 H 0.090 0.910 31 H 0.084 0.916 32 H 0.074 0.926 33 H 0.074 0.926 34 H 0.093 0.907 35 H 0.054 0.946 36 H 0.051 0.949 37 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.214 4.610 -4.073 6.940 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.109 4.109 3 C -0.153 4.153 4 C -0.180 4.180 5 C 0.063 3.937 6 O -0.305 6.305 7 C -0.043 4.043 8 C 0.073 3.927 9 H 0.095 0.905 10 C -0.536 4.536 11 H 0.079 0.921 12 C -0.136 4.136 13 N -0.525 5.525 14 Si 0.715 3.285 15 H -0.208 1.208 16 H -0.213 1.213 17 H -0.198 1.198 18 C -0.128 4.128 19 C -0.243 4.243 20 C -0.209 4.209 21 C -0.073 4.073 22 C -0.178 4.178 23 H 0.080 0.920 24 H 0.074 0.926 25 H 0.083 0.917 26 H 0.127 0.873 27 H 0.129 0.871 28 H 0.240 0.760 29 H 0.071 0.929 30 H 0.109 0.891 31 H 0.102 0.898 32 H 0.092 0.908 33 H 0.092 0.908 34 H 0.111 0.889 35 H 0.072 0.928 36 H 0.070 0.930 37 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -3.389 4.488 -4.547 7.232 hybrid contribution 0.695 0.224 1.503 1.671 sum -2.694 4.713 -3.044 6.223 Atomic orbital electron populations 1.20711 0.92388 1.01728 1.01479 1.19644 0.95200 0.92994 1.03085 1.20503 0.93475 0.96679 1.04609 1.21214 0.94417 0.97308 1.05076 1.18233 0.83068 0.91399 1.01037 1.84666 1.16100 1.96332 1.33359 1.20939 0.92601 0.97263 0.93482 1.17706 0.94216 0.90646 0.90135 0.90504 1.20950 1.00003 1.36981 0.95619 0.92063 1.24993 0.95192 0.94620 0.98832 1.69836 1.21568 1.34945 1.26136 0.86675 0.81246 0.77598 0.83029 1.20777 1.21306 1.19761 1.22469 1.01286 0.92283 0.96726 1.22980 0.98245 1.06794 0.96263 1.22675 0.94117 1.01678 1.02430 1.19532 0.93225 0.94315 1.00250 1.20951 0.99200 0.96095 1.01532 0.92038 0.92611 0.91735 0.87347 0.87091 0.75992 0.92854 0.89141 0.89761 0.90790 0.90783 0.88860 0.92771 0.93036 0.87820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.57 9.19 36.01 0.33 -1.24 16 2 C -0.11 -2.03 5.88 -104.60 -0.62 -2.65 16 3 C -0.13 -2.40 9.69 -39.61 -0.38 -2.79 16 4 C -0.16 -3.06 9.99 -39.43 -0.39 -3.46 16 5 C 0.11 2.28 6.21 -39.21 -0.24 2.04 16 6 O -0.49 -10.09 10.68 -19.40 -0.21 -10.30 16 7 C -0.04 -0.94 4.78 -104.47 -0.50 -1.44 16 8 C 0.09 2.15 1.93 -92.92 -0.18 1.97 16 9 H 0.08 1.96 4.44 -51.93 -0.23 1.73 16 10 C -0.50 -12.58 6.70 -34.44 -0.23 -12.81 16 11 H 0.06 1.54 6.76 -52.49 -0.35 1.19 16 12 C 0.07 1.71 5.45 -17.82 -0.10 1.62 16 13 N -0.89 -23.87 12.24 55.43 0.68 -23.19 16 14 Si 0.89 20.34 29.54 -169.99 -5.02 15.32 16 15 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 16 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 17 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 18 C -0.11 -2.37 4.73 -90.62 -0.43 -2.80 16 19 C -0.21 -3.94 10.18 -26.73 -0.27 -4.21 16 20 C -0.17 -3.44 10.01 -26.73 -0.27 -3.71 16 21 C -0.07 -1.53 5.88 -104.65 -0.62 -2.15 16 22 C -0.12 -2.38 8.62 36.01 0.31 -2.07 16 23 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 24 H 0.05 0.71 8.08 -51.93 -0.42 0.29 16 25 H 0.06 0.90 6.58 -51.93 -0.34 0.56 16 26 H 0.11 1.62 8.06 -52.48 -0.42 1.20 16 27 H 0.11 1.85 8.06 -52.49 -0.42 1.42 16 28 H 0.38 7.02 8.09 45.56 0.37 7.39 16 29 H 0.26 6.81 8.31 -40.82 -0.34 6.48 16 30 H 0.09 2.02 6.94 -51.93 -0.36 1.66 16 31 H 0.08 1.61 8.08 -51.93 -0.42 1.19 16 32 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 33 H 0.07 1.34 8.14 -51.93 -0.42 0.91 16 34 H 0.09 2.00 8.14 -51.93 -0.42 1.57 16 35 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 36 H 0.05 0.89 6.38 -51.93 -0.33 0.56 16 37 H 0.10 2.34 5.78 -51.93 -0.30 2.04 16 LS Contribution 299.29 15.07 4.51 4.51 Total: -1.00 -27.34 299.29 -8.11 -35.45 By element: Atomic # 1 Polarization: 16.38 SS G_CDS: -4.48 Total: 11.90 kcal Atomic # 6 Polarization: -30.10 SS G_CDS: -3.59 Total: -33.68 kcal Atomic # 7 Polarization: -23.87 SS G_CDS: 0.68 Total: -23.19 kcal Atomic # 8 Polarization: -10.09 SS G_CDS: -0.21 Total: -10.30 kcal Atomic # 14 Polarization: 20.34 SS G_CDS: -5.02 Total: 15.32 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -27.34 -8.11 -35.45 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260016026.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.206 kcal (2) G-P(sol) polarization free energy of solvation -27.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.130 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.447 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds