Wall clock time and date at job start Mon Mar 30 2020 05:40:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38291 * 119.94470 * 2 1 4 4 C 1.38118 * 120.06109 * 180.02562 * 3 2 1 5 5 C 1.38757 * 119.94366 * 359.97438 * 4 3 2 6 6 O 1.35893 * 120.05651 * 180.02562 * 5 4 3 7 7 C 1.38719 * 119.88466 * 359.72298 * 5 4 3 8 8 C 1.50698 * 120.02560 * 180.28171 * 7 5 4 9 9 H 1.08998 * 109.46953 * 174.94530 * 8 7 5 10 10 C 1.50693 * 109.47529 * 54.93728 * 8 7 5 11 11 H 1.07998 * 120.00737 * 274.73969 * 10 8 7 12 12 C 1.37882 * 119.99772 * 94.73360 * 10 8 7 13 13 N 1.31516 * 119.99984 * 5.77042 * 12 10 8 14 14 Si 1.86804 * 120.00122 * 185.76753 * 12 10 8 15 15 H 1.48499 * 109.46688 * 90.00144 * 14 12 10 16 16 H 1.48497 * 109.47206 * 210.00193 * 14 12 10 17 17 H 1.48498 * 109.47103 * 330.00212 * 14 12 10 18 18 C 1.53007 * 109.47145 * 294.94173 * 8 7 5 19 19 C 1.52999 * 117.49610 * 253.92283 * 18 8 7 20 20 C 1.52994 * 117.50128 * 185.29779 * 18 8 7 21 21 C 1.38160 * 119.94142 * 0.55798 * 7 5 4 22 22 C 1.50699 * 119.96866 * 179.74663 * 21 7 5 23 23 H 1.09000 * 109.46578 * 270.01978 * 1 2 3 24 24 H 1.08991 * 109.47139 * 30.02156 * 1 2 3 25 25 H 1.09000 * 109.46484 * 150.02412 * 1 2 3 26 26 H 1.08009 * 119.96799 * 0.02562 * 3 2 1 27 27 H 1.07995 * 120.02970 * 180.02562 * 4 3 2 28 28 H 0.96705 * 114.00345 * 90.00309 * 6 5 4 29 29 H 0.96997 * 120.00031 * 180.02562 * 13 12 10 30 30 H 1.08999 * 115.54856 * 39.62285 * 18 8 7 31 31 H 1.09003 * 117.50029 * 359.97438 * 19 18 8 32 32 H 1.08999 * 117.49975 * 145.02023 * 19 18 8 33 33 H 1.08995 * 117.50173 * 214.97766 * 20 18 8 34 34 H 1.09001 * 117.49936 * 359.97345 * 20 18 8 35 35 H 1.09004 * 109.47060 * 275.44782 * 22 21 7 36 36 H 1.08998 * 109.47590 * 155.44775 * 22 21 7 37 37 H 1.09002 * 109.47701 * 35.44454 * 22 21 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1973 1.1983 0.0000 4 6 3.5785 1.2011 -0.0005 5 6 4.2735 0.0002 -0.0005 6 8 5.6324 0.0003 -0.0005 7 6 3.5788 -1.2005 0.0058 8 6 4.3304 -2.5066 0.0123 9 1 3.6244 -3.3316 0.1072 10 6 5.2888 -2.5290 1.1750 11 1 6.2698 -2.0887 1.0749 12 6 4.9131 -3.1117 2.3668 13 7 3.7650 -3.7471 2.4550 14 14 6.0349 -2.9988 3.8562 15 1 5.7029 -1.7784 4.6345 16 1 5.8450 -4.1981 4.7111 17 1 7.4487 -2.9300 3.4070 18 6 5.1117 -2.6519 -1.2953 19 6 4.5783 -3.6445 -2.3303 20 6 5.8448 -3.9728 -1.5372 21 6 2.1972 -1.1978 0.0005 22 6 1.4418 -2.5018 0.0016 23 1 -0.3632 0.0004 1.0277 24 1 -0.3633 0.8897 -0.5141 25 1 -0.3632 -0.8902 -0.5135 26 1 1.6558 2.1329 0.0004 27 1 4.1170 2.1372 -0.0001 28 1 6.0258 0.0002 0.8829 29 1 3.5006 -4.1567 3.2936 30 1 5.5806 -1.7407 -1.6664 31 1 3.6711 -4.1943 -2.0795 32 1 4.6963 -3.3864 -3.3827 33 1 6.7960 -3.9307 -2.0677 34 1 5.7710 -4.7382 -0.7646 35 1 1.3481 -2.8683 -1.0207 36 1 0.4492 -2.3465 0.4243 37 1 1.9818 -3.2341 0.6019 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260016026.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:40:45 Heat of formation + Delta-G solvation = -25.169116 kcal Electronic energy + Delta-G solvation = -18475.912667 eV Core-core repulsion = 15796.848633 eV Total energy + Delta-G solvation = -2679.064034 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.90745 -38.11714 -37.66255 -34.89390 -33.35502 -32.79854 -29.77034 -27.66021 -26.59316 -25.43874 -23.03315 -22.21089 -21.68330 -20.49056 -18.92431 -18.01536 -16.78913 -16.56283 -16.45562 -15.98071 -15.27532 -14.86592 -14.55830 -14.27324 -14.02255 -13.66040 -13.50940 -13.41283 -13.15958 -12.84126 -12.63801 -12.49044 -12.24647 -12.18352 -12.07948 -11.92398 -11.58715 -11.32716 -11.01600 -10.72550 -10.34508 -10.26805 -9.14940 -8.91783 -8.05165 -6.09948 0.59452 0.76967 1.41012 1.44338 1.51660 2.44991 2.92008 3.22043 3.33105 3.77340 4.08483 4.16611 4.21768 4.35373 4.41412 4.49192 4.61519 4.69888 4.78362 4.84944 4.88034 4.95789 4.99407 5.06108 5.16712 5.23368 5.28725 5.43424 5.46912 5.53643 5.60655 5.72598 5.77381 5.83996 6.01835 6.15815 6.34319 6.52117 7.02933 7.14121 7.53325 9.01876 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.017017 B = 0.010226 C = 0.009089 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1645.048093 B = 2737.509214 C = 3080.059744 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.112 4.112 3 C -0.130 4.130 4 C -0.163 4.163 5 C 0.084 3.916 6 O -0.500 6.500 7 C -0.072 4.072 8 C 0.096 3.904 9 H 0.052 0.948 10 C -0.498 4.498 11 H 0.056 0.944 12 C 0.020 3.980 13 N -0.914 5.914 14 Si 0.941 3.059 15 H -0.281 1.281 16 H -0.291 1.291 17 H -0.268 1.268 18 C -0.128 4.128 19 C -0.186 4.186 20 C -0.170 4.170 21 C -0.097 4.097 22 C -0.113 4.113 23 H 0.069 0.931 24 H 0.082 0.918 25 H 0.069 0.931 26 H 0.146 0.854 27 H 0.134 0.866 28 H 0.388 0.612 29 H 0.258 0.742 30 H 0.083 0.917 31 H 0.080 0.920 32 H 0.100 0.900 33 H 0.096 0.904 34 H 0.072 0.928 35 H 0.063 0.937 36 H 0.071 0.929 37 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.927 6.210 -4.709 8.727 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.112 4.112 3 C -0.148 4.148 4 C -0.182 4.182 5 C 0.040 3.960 6 O -0.311 6.311 7 C -0.073 4.073 8 C 0.077 3.923 9 H 0.070 0.930 10 C -0.536 4.536 11 H 0.074 0.926 12 C -0.179 4.179 13 N -0.553 5.553 14 Si 0.768 3.232 15 H -0.207 1.207 16 H -0.217 1.217 17 H -0.192 1.192 18 C -0.147 4.147 19 C -0.223 4.223 20 C -0.207 4.207 21 C -0.098 4.098 22 C -0.170 4.170 23 H 0.088 0.912 24 H 0.101 0.899 25 H 0.088 0.912 26 H 0.164 0.836 27 H 0.152 0.848 28 H 0.245 0.755 29 H 0.067 0.933 30 H 0.101 0.899 31 H 0.098 0.902 32 H 0.119 0.881 33 H 0.114 0.886 34 H 0.091 0.909 35 H 0.082 0.918 36 H 0.089 0.911 37 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -4.092 6.094 -5.189 8.990 hybrid contribution 0.891 -0.224 1.641 1.881 sum -3.201 5.871 -3.548 7.570 Atomic orbital electron populations 1.20770 0.89498 1.03379 1.02452 1.20095 0.97403 0.92284 1.01449 1.20964 0.93207 0.97973 1.02686 1.21507 0.95233 0.97295 1.04116 1.18466 0.83270 0.92031 1.02269 1.84637 1.16210 1.96393 1.33864 1.20950 0.93599 0.97088 0.95656 1.17524 0.93565 0.90772 0.90424 0.93029 1.21165 1.00054 1.35987 0.96362 0.92561 1.25607 0.96378 0.94866 1.01049 1.69973 1.22919 1.36151 1.26250 0.85817 0.79958 0.77135 0.80290 1.20689 1.21726 1.19225 1.22355 1.02566 0.92642 0.97105 1.23008 0.97535 1.04680 0.97040 1.22672 0.95673 1.00050 1.02348 1.19803 0.93028 0.95765 1.01164 1.20838 0.99541 0.94997 1.01580 0.91232 0.89923 0.91230 0.83645 0.84776 0.75501 0.93304 0.89891 0.90151 0.88146 0.88559 0.90904 0.91833 0.91054 0.91243 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.73 9.19 71.24 0.65 -2.07 16 2 C -0.11 -3.92 5.88 -19.85 -0.12 -4.04 16 3 C -0.13 -4.25 9.69 22.25 0.22 -4.04 16 4 C -0.16 -5.85 9.99 22.37 0.22 -5.63 16 5 C 0.08 3.55 6.21 22.51 0.14 3.69 16 6 O -0.50 -20.49 10.68 -92.35 -0.99 -21.48 16 7 C -0.07 -3.28 4.78 -19.77 -0.09 -3.37 16 8 C 0.10 4.63 1.93 -12.29 -0.02 4.60 16 9 H 0.05 2.74 4.44 -2.39 -0.01 2.73 16 10 C -0.50 -25.74 6.70 25.60 0.17 -25.57 16 11 H 0.06 2.89 6.76 -2.91 -0.02 2.87 16 12 C 0.02 1.06 5.45 84.66 0.46 1.52 16 13 N -0.91 -50.71 12.24 21.45 0.26 -50.45 16 14 Si 0.94 42.50 29.54 68.60 2.03 44.52 16 15 H -0.28 -12.53 7.11 99.48 0.71 -11.83 16 16 H -0.29 -13.23 7.11 99.48 0.71 -12.52 16 17 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 18 C -0.13 -5.60 4.73 -10.79 -0.05 -5.65 16 19 C -0.19 -6.97 10.18 30.59 0.31 -6.66 16 20 C -0.17 -6.80 10.01 30.59 0.31 -6.49 16 21 C -0.10 -4.05 5.88 -19.88 -0.12 -4.17 16 22 C -0.11 -4.45 8.62 71.24 0.61 -3.84 16 23 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 24 H 0.08 1.72 8.08 -2.39 -0.02 1.70 16 25 H 0.07 1.74 6.58 -2.39 -0.02 1.72 16 26 H 0.15 3.63 8.06 -2.91 -0.02 3.61 16 27 H 0.13 4.09 8.06 -2.91 -0.02 4.06 16 28 H 0.39 14.42 8.09 -74.05 -0.60 13.82 16 29 H 0.26 13.86 8.31 -92.71 -0.77 13.08 16 30 H 0.08 3.73 6.94 -2.39 -0.02 3.71 16 31 H 0.08 3.07 8.08 -2.39 -0.02 3.05 16 32 H 0.10 3.23 8.14 -2.39 -0.02 3.21 16 33 H 0.10 3.36 8.14 -2.39 -0.02 3.34 16 34 H 0.07 3.19 8.14 -2.39 -0.02 3.17 16 35 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 36 H 0.07 2.42 6.38 -2.39 -0.02 2.40 16 37 H 0.07 3.25 5.78 -2.39 -0.01 3.24 16 Total: -1.00 -59.27 299.29 4.48 -54.79 By element: Atomic # 1 Polarization: 33.85 SS G_CDS: 0.48 Total: 34.33 kcal Atomic # 6 Polarization: -64.41 SS G_CDS: 2.70 Total: -61.71 kcal Atomic # 7 Polarization: -50.71 SS G_CDS: 0.26 Total: -50.45 kcal Atomic # 8 Polarization: -20.49 SS G_CDS: -0.99 Total: -21.48 kcal Atomic # 14 Polarization: 42.50 SS G_CDS: 2.03 Total: 44.52 kcal Total: -59.27 4.48 -54.79 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260016026.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.625 kcal (2) G-P(sol) polarization free energy of solvation -59.270 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.644 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.475 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.794 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds