Wall clock time and date at job start Mon Mar 30 2020 05:49:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38285 * 119.97683 * 2 1 4 4 C 1.38240 * 120.11354 * 180.23765 * 3 2 1 5 5 C 1.50703 * 119.97441 * 179.76825 * 4 3 2 6 6 H 1.08997 * 109.47302 * 359.71961 * 5 4 3 7 7 C 1.50703 * 109.47018 * 239.71927 * 5 4 3 8 8 H 1.07992 * 119.99852 * 265.22002 * 7 5 4 9 9 C 1.37877 * 119.99503 * 85.22190 * 7 5 4 10 10 N 1.31506 * 120.00229 * 5.09018 * 9 7 5 11 11 Si 1.86804 * 119.99560 * 185.08969 * 9 7 5 12 12 H 1.48493 * 109.47253 * 90.00011 * 11 9 7 13 13 H 1.48502 * 109.47047 * 210.00136 * 11 9 7 14 14 H 1.48505 * 109.47269 * 329.99849 * 11 9 7 15 15 C 1.52997 * 109.47498 * 119.72000 * 5 4 3 16 16 C 1.52998 * 117.49897 * 254.13351 * 15 5 4 17 17 C 1.52999 * 117.50361 * 185.47225 * 15 5 4 18 18 C 1.38168 * 120.05501 * 359.48529 * 4 3 2 19 19 C 1.38709 * 119.94258 * 0.26218 * 18 4 3 20 20 O 1.35896 * 120.05479 * 180.02562 * 19 18 4 21 21 C 1.38126 * 119.97024 * 179.72575 * 2 1 3 22 22 C 1.50699 * 120.02538 * 0.04257 * 21 2 1 23 23 H 1.09003 * 109.47118 * 270.27813 * 1 2 3 24 24 H 1.09003 * 109.47152 * 30.27236 * 1 2 3 25 25 H 1.09000 * 109.47803 * 150.27384 * 1 2 3 26 26 H 1.08001 * 119.94392 * 359.97438 * 3 2 1 27 27 H 0.97007 * 120.00243 * 179.97438 * 10 9 7 28 28 H 1.09003 * 115.54969 * 39.79895 * 15 5 4 29 29 H 1.08993 * 117.50285 * 359.97438 * 16 15 5 30 30 H 1.09006 * 117.49840 * 145.02409 * 16 15 5 31 31 H 1.09004 * 117.49700 * 214.98439 * 17 15 5 32 32 H 1.09003 * 117.49284 * 359.97156 * 17 15 5 33 33 H 1.08002 * 120.02943 * 180.23148 * 18 4 3 34 34 H 0.96706 * 114.00499 * 89.99912 * 20 19 18 35 35 H 1.09001 * 109.47211 * 269.97365 * 22 21 2 36 36 H 1.08996 * 109.47595 * 29.98025 * 22 21 2 37 37 H 1.09002 * 109.46866 * 149.97596 * 22 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1979 1.1979 0.0000 4 6 3.5803 1.2012 -0.0050 5 6 4.3301 2.5084 -0.0102 6 1 3.6195 3.3349 -0.0143 7 6 5.1971 2.5853 -1.2405 8 1 6.2328 2.2836 -1.1908 9 6 4.6678 3.0408 -2.4294 10 7 3.4369 3.5020 -2.4673 11 14 5.6994 3.0028 -3.9862 12 1 5.4993 1.7058 -4.6811 13 1 5.2856 4.1130 -4.8815 14 1 7.1335 3.1594 -3.6338 15 6 5.2087 2.5976 1.2392 16 6 4.7537 3.5378 2.3571 17 6 5.9557 3.9099 1.4854 18 6 4.2752 0.0069 0.0008 19 6 3.5845 -1.1959 0.0061 20 8 4.2656 -2.3719 0.0123 21 6 2.1970 -1.1966 0.0057 22 6 1.4434 -2.5016 0.0110 23 1 -0.3633 0.0050 1.0277 24 1 -0.3633 0.8875 -0.5181 25 1 -0.3635 -0.8924 -0.5095 26 1 1.6566 2.1324 -0.0004 27 1 3.0646 3.8229 -3.3036 28 1 5.7064 1.6727 1.5308 29 1 3.8287 4.0932 2.2024 30 1 4.9526 3.2318 3.3842 31 1 6.9448 3.8484 1.9393 32 1 5.8216 4.7096 0.7570 33 1 5.3552 0.0100 0.0007 34 1 4.4621 -2.7080 0.8975 35 1 1.2614 -2.8119 1.0399 36 1 0.4912 -2.3734 -0.5037 37 1 2.0326 -3.2634 -0.4995 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260028326.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:49:17 Heat of formation + Delta-G solvation = -31.546100 kcal Electronic energy + Delta-G solvation = -17922.608142 eV Core-core repulsion = 15243.267581 eV Total energy + Delta-G solvation = -2679.340561 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.87951 -38.64226 -37.47548 -35.18103 -33.95557 -31.72288 -30.26919 -28.06587 -26.75501 -24.95215 -23.06063 -22.79183 -21.79392 -20.38776 -18.63650 -18.35139 -16.94191 -16.68684 -16.59362 -15.94437 -15.66978 -14.92420 -14.68330 -14.41104 -13.84512 -13.63830 -13.52155 -13.36368 -13.30640 -12.95552 -12.80607 -12.60335 -12.28308 -12.25094 -12.21436 -12.01617 -11.62845 -11.29504 -11.11105 -10.96515 -10.50131 -10.38155 -9.25664 -9.00605 -8.12308 -6.19980 0.57033 0.69172 1.36226 1.38890 1.46605 2.39833 2.93670 3.16281 3.25043 3.45312 4.00622 4.09446 4.21719 4.28180 4.36672 4.41880 4.46363 4.69025 4.77257 4.82602 4.88304 4.92169 4.94648 5.02491 5.08628 5.13897 5.20223 5.23822 5.42172 5.44864 5.56789 5.63719 5.75486 5.79012 5.89980 6.11390 6.23951 6.40601 6.89888 7.00789 7.44698 8.94201 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.016783 B = 0.008709 C = 0.007510 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1667.968821 B = 3214.220944 C = 3727.342643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.083 4.083 3 C -0.142 4.142 4 C -0.021 4.021 5 C 0.100 3.900 6 H 0.025 0.975 7 C -0.506 4.506 8 H 0.051 0.949 9 C 0.018 3.982 10 N -0.914 5.914 11 Si 0.941 3.059 12 H -0.284 1.284 13 H -0.283 1.283 14 H -0.265 1.265 15 C -0.139 4.139 16 C -0.178 4.178 17 C -0.171 4.171 18 C -0.160 4.160 19 C 0.095 3.905 20 O -0.504 6.504 21 C -0.149 4.149 22 C -0.098 4.098 23 H 0.085 0.915 24 H 0.057 0.943 25 H 0.084 0.916 26 H 0.100 0.900 27 H 0.259 0.741 28 H 0.092 0.908 29 H 0.078 0.922 30 H 0.109 0.891 31 H 0.103 0.897 32 H 0.072 0.928 33 H 0.110 0.890 34 H 0.401 0.599 35 H 0.082 0.918 36 H 0.077 0.923 37 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.191 -8.232 8.461 12.228 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.083 4.083 3 C -0.161 4.161 4 C -0.022 4.022 5 C 0.081 3.919 6 H 0.044 0.956 7 C -0.544 4.544 8 H 0.069 0.931 9 C -0.181 4.181 10 N -0.552 5.552 11 Si 0.767 3.233 12 H -0.210 1.210 13 H -0.208 1.208 14 H -0.189 1.189 15 C -0.158 4.158 16 C -0.215 4.215 17 C -0.208 4.208 18 C -0.178 4.178 19 C 0.051 3.949 20 O -0.315 6.315 21 C -0.150 4.150 22 C -0.154 4.154 23 H 0.104 0.896 24 H 0.076 0.924 25 H 0.102 0.898 26 H 0.118 0.882 27 H 0.068 0.932 28 H 0.110 0.890 29 H 0.097 0.903 30 H 0.127 0.873 31 H 0.122 0.878 32 H 0.091 0.909 33 H 0.128 0.872 34 H 0.259 0.741 35 H 0.101 0.899 36 H 0.095 0.905 37 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -3.348 -8.093 7.731 11.682 hybrid contribution 0.734 0.438 -0.802 1.172 sum -2.614 -7.656 6.929 10.651 Atomic orbital electron populations 1.20832 0.89274 1.03059 1.03150 1.19923 0.97358 0.91696 0.99318 1.20965 0.94101 0.97294 1.03707 1.20383 0.93515 0.96271 0.92029 1.17437 0.92850 0.90321 0.91302 0.95649 1.21188 0.96365 1.42357 0.94498 0.93102 1.25627 0.96067 0.94812 1.01584 1.70033 1.15796 1.42513 1.26905 0.85812 0.79769 0.77348 0.80350 1.21025 1.20831 1.18943 1.22333 1.02705 0.93903 0.96822 1.23019 0.98303 1.04039 0.96102 1.22757 0.96353 0.99200 1.02465 1.21140 0.99780 0.91866 1.05028 1.18310 0.89898 0.84794 1.01938 1.84725 1.76335 1.35820 1.34669 1.20122 0.92661 0.96534 1.05653 1.20650 0.99516 0.92330 1.02929 0.89606 0.92362 0.89751 0.88203 0.93170 0.89034 0.90310 0.87307 0.87841 0.90919 0.87167 0.74103 0.89948 0.90457 0.91765 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.94 9.60 71.23 0.68 -2.26 16 2 C -0.08 -3.04 5.88 -19.88 -0.12 -3.16 16 3 C -0.14 -6.30 9.32 22.28 0.21 -6.09 16 4 C -0.02 -1.00 4.77 -19.88 -0.09 -1.09 16 5 C 0.10 4.95 2.06 -12.29 -0.03 4.92 16 6 H 0.03 1.42 7.07 -2.39 -0.02 1.40 16 7 C -0.51 -27.76 7.72 25.60 0.20 -27.56 16 8 H 0.05 2.79 7.81 -2.91 -0.02 2.76 16 9 C 0.02 1.04 5.45 84.66 0.46 1.50 16 10 N -0.91 -53.53 12.92 21.45 0.28 -53.26 16 11 Si 0.94 44.96 29.54 68.60 2.03 46.99 16 12 H -0.28 -13.66 7.11 99.48 0.71 -12.95 16 13 H -0.28 -13.20 7.11 99.48 0.71 -12.50 16 14 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 15 C -0.14 -5.78 4.92 -10.80 -0.05 -5.83 16 16 C -0.18 -6.23 10.18 30.62 0.31 -5.91 16 17 C -0.17 -6.40 10.02 30.62 0.31 -6.10 16 18 C -0.16 -6.93 8.60 22.37 0.19 -6.74 16 19 C 0.09 3.57 6.68 22.50 0.15 3.72 16 20 O -0.50 -15.82 12.55 -92.38 -1.16 -16.98 16 21 C -0.15 -5.15 5.89 -19.77 -0.12 -5.27 16 22 C -0.10 -2.45 9.38 71.24 0.67 -1.78 16 23 H 0.09 1.98 8.14 -2.39 -0.02 1.96 16 24 H 0.06 1.66 8.09 -2.39 -0.02 1.64 16 25 H 0.08 1.95 5.94 -2.39 -0.01 1.94 16 26 H 0.10 4.60 7.94 -2.91 -0.02 4.58 16 27 H 0.26 14.60 8.31 -92.70 -0.77 13.83 16 28 H 0.09 3.62 7.42 -2.39 -0.02 3.60 16 29 H 0.08 2.87 8.08 -2.39 -0.02 2.85 16 30 H 0.11 3.12 8.14 -2.38 -0.02 3.10 16 31 H 0.10 3.28 8.14 -2.39 -0.02 3.26 16 32 H 0.07 3.04 8.14 -2.39 -0.02 3.02 16 33 H 0.11 4.83 7.80 -2.91 -0.02 4.80 16 34 H 0.40 8.12 9.06 -74.05 -0.67 7.45 16 35 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 36 H 0.08 1.72 5.95 -2.39 -0.01 1.70 16 37 H 0.06 1.61 7.53 -2.39 -0.02 1.60 16 Total: -1.00 -64.98 308.53 4.31 -60.67 By element: Atomic # 1 Polarization: 23.83 SS G_CDS: 0.39 Total: 24.22 kcal Atomic # 6 Polarization: -64.42 SS G_CDS: 2.77 Total: -61.65 kcal Atomic # 7 Polarization: -53.53 SS G_CDS: 0.28 Total: -53.26 kcal Atomic # 8 Polarization: -15.82 SS G_CDS: -1.16 Total: -16.98 kcal Atomic # 14 Polarization: 44.96 SS G_CDS: 2.03 Total: 46.99 kcal Total: -64.98 4.31 -60.67 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260028326.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.126 kcal (2) G-P(sol) polarization free energy of solvation -64.984 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.312 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.672 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds