Wall clock time and date at job start Mon Mar 30 2020 05:49:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38292 * 119.97182 * 2 1 4 4 C 1.38240 * 120.10884 * 179.97438 * 3 2 1 5 5 C 1.50701 * 119.97166 * 180.02562 * 4 3 2 6 6 H 1.09007 * 109.47071 * 0.02562 * 5 4 3 7 7 C 1.50702 * 109.47373 * 119.99960 * 5 4 3 8 8 H 1.08003 * 119.99421 * 0.02562 * 7 5 4 9 9 C 1.37868 * 120.00608 * 180.02562 * 7 5 4 10 10 N 1.31519 * 119.99865 * 0.02562 * 9 7 5 11 11 Si 1.86797 * 120.00395 * 180.02562 * 9 7 5 12 12 H 1.48498 * 109.46970 * 90.00192 * 11 9 7 13 13 H 1.48503 * 109.47282 * 210.00093 * 11 9 7 14 14 H 1.48495 * 109.47187 * 330.00168 * 11 9 7 15 15 C 1.52995 * 109.47681 * 240.00513 * 5 4 3 16 16 C 1.52996 * 117.50300 * 128.62003 * 15 5 4 17 17 C 1.53000 * 60.00183 * 252.51157 * 16 15 5 18 18 C 1.38164 * 120.05728 * 359.77114 * 4 3 2 19 19 C 1.38712 * 119.94405 * 0.53083 * 18 4 3 20 20 O 1.35896 * 120.05761 * 179.72059 * 19 18 4 21 21 C 1.38119 * 119.97279 * 180.02562 * 2 1 3 22 22 C 1.50702 * 120.02803 * 0.02562 * 21 2 1 23 23 H 1.09004 * 109.46974 * 269.97574 * 1 2 3 24 24 H 1.08999 * 109.46863 * 29.97170 * 1 2 3 25 25 H 1.08994 * 109.47022 * 149.97741 * 1 2 3 26 26 H 1.08000 * 119.94141 * 0.02562 * 3 2 1 27 27 H 0.96995 * 120.00204 * 180.02562 * 10 9 7 28 28 H 1.08999 * 115.54972 * 274.33381 * 15 5 4 29 29 H 1.09001 * 117.50112 * 0.02562 * 16 15 5 30 30 H 1.09001 * 117.50439 * 145.02215 * 16 15 5 31 31 H 1.09001 * 117.49781 * 252.51027 * 17 16 15 32 32 H 1.08999 * 117.51831 * 107.47851 * 17 16 15 33 33 H 1.08008 * 120.02746 * 180.25201 * 18 4 3 34 34 H 0.96700 * 114.00170 * 269.72567 * 20 19 18 35 35 H 1.09004 * 109.47065 * 269.98459 * 22 21 2 36 36 H 1.09003 * 109.46691 * 29.97816 * 22 21 2 37 37 H 1.08992 * 109.47474 * 149.97916 * 22 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1979 1.1980 0.0000 4 6 3.5803 1.2013 0.0005 5 6 4.3300 2.5086 0.0011 6 1 3.6193 3.3351 0.0015 7 6 5.1957 2.5907 1.2319 8 1 5.2026 1.7773 1.9424 9 6 5.9789 3.7040 1.4510 10 7 5.9701 4.6947 0.5860 11 14 7.0525 3.8054 2.9763 12 1 8.3890 3.2301 2.6799 13 1 7.2039 5.2260 3.3815 14 1 6.4181 3.0408 4.0799 15 6 5.2098 2.5926 -1.2477 16 6 5.0944 3.8513 -2.1099 17 6 4.5132 2.5267 -2.6084 18 6 4.2752 0.0071 0.0058 19 6 3.5846 -1.1958 -0.0005 20 8 4.2657 -2.3718 -0.0010 21 6 2.1971 -1.1965 -0.0005 22 6 1.4436 -2.5016 -0.0017 23 1 -0.3633 -0.0004 1.0277 24 1 -0.3633 0.8902 -0.5134 25 1 -0.3633 -0.8897 -0.5142 26 1 1.6565 2.1325 0.0004 27 1 6.5213 5.4778 0.7399 28 1 6.1926 2.1289 -1.1626 29 1 4.3920 4.6198 -1.7871 30 1 6.0014 4.2161 -2.5919 31 1 5.0379 2.0200 -3.4184 32 1 3.4282 2.4231 -2.6138 33 1 5.3552 0.0103 0.0104 34 1 4.4629 -2.7117 -0.8846 35 1 1.2617 -2.8171 1.0257 36 1 0.4912 -2.3708 -0.5155 37 1 2.0326 -3.2608 -0.5161 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260028330.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:49:19 Heat of formation + Delta-G solvation = -13.104829 kcal Electronic energy + Delta-G solvation = -17899.611716 eV Core-core repulsion = 15221.070829 eV Total energy + Delta-G solvation = -2678.540888 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.56923 -37.05764 -36.05434 -33.30026 -32.30097 -30.52967 -28.67021 -26.79312 -25.20450 -23.01731 -21.49035 -21.20968 -20.32023 -18.68362 -17.26093 -16.52367 -15.50734 -15.16161 -14.63695 -14.49626 -14.11263 -13.64813 -13.11684 -12.70500 -12.56547 -12.49297 -12.42442 -11.91826 -11.77472 -11.27904 -11.14935 -10.94666 -10.73893 -10.66986 -10.46422 -10.13262 -10.05888 -9.78301 -9.57176 -8.72744 -8.72109 -8.31408 -7.91448 -7.63284 -5.99925 -4.06839 1.90644 2.02375 3.30665 3.37643 3.42346 4.24837 4.45935 4.69775 5.08255 5.24006 5.30029 5.36532 5.43307 5.56131 5.73382 5.93334 5.95684 5.97008 6.07949 6.11232 6.15019 6.21998 6.31709 6.43571 6.51684 6.53995 6.81514 6.90617 7.06058 7.11088 7.15495 7.24858 7.27576 7.48801 7.59073 7.81305 7.96314 8.14499 8.35314 8.95741 9.57520 11.05734 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.021892 B = 0.007340 C = 0.006672 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1278.709911 B = 3813.691820 C = 4195.757062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.081 4.081 3 C -0.135 4.135 4 C -0.011 4.011 5 C 0.105 3.895 6 H 0.037 0.963 7 C -0.515 4.515 8 H 0.058 0.942 9 C 0.068 3.932 10 N -0.875 5.875 11 Si 0.888 3.112 12 H -0.281 1.281 13 H -0.287 1.287 14 H -0.274 1.274 15 C -0.080 4.080 16 C -0.137 4.137 17 C -0.226 4.226 18 C -0.130 4.130 19 C 0.095 3.905 20 O -0.500 6.500 21 C -0.142 4.142 22 C -0.101 4.101 23 H 0.065 0.935 24 H 0.062 0.938 25 H 0.064 0.936 26 H 0.116 0.884 27 H 0.259 0.741 28 H 0.082 0.918 29 H 0.085 0.915 30 H 0.070 0.930 31 H 0.070 0.930 32 H 0.077 0.923 33 H 0.126 0.874 34 H 0.378 0.622 35 H 0.061 0.939 36 H 0.061 0.939 37 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.102 -8.741 -4.557 12.150 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.081 4.081 3 C -0.153 4.153 4 C -0.011 4.011 5 C 0.086 3.914 6 H 0.055 0.945 7 C -0.553 4.553 8 H 0.076 0.924 9 C -0.135 4.135 10 N -0.512 5.512 11 Si 0.716 3.284 12 H -0.207 1.207 13 H -0.213 1.213 14 H -0.199 1.199 15 C -0.099 4.099 16 C -0.174 4.174 17 C -0.263 4.263 18 C -0.148 4.148 19 C 0.051 3.949 20 O -0.309 6.309 21 C -0.142 4.142 22 C -0.157 4.157 23 H 0.084 0.916 24 H 0.081 0.919 25 H 0.082 0.918 26 H 0.134 0.866 27 H 0.069 0.931 28 H 0.100 0.900 29 H 0.104 0.896 30 H 0.088 0.912 31 H 0.088 0.912 32 H 0.095 0.905 33 H 0.144 0.856 34 H 0.233 0.767 35 H 0.080 0.920 36 H 0.080 0.920 37 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -7.064 -8.493 -3.972 11.739 hybrid contribution 0.888 0.167 0.333 0.963 sum -6.176 -8.327 -3.639 10.987 Atomic orbital electron populations 1.20788 0.91964 1.02137 1.01857 1.19489 0.95256 0.92382 1.00936 1.20997 0.94213 0.96785 1.03290 1.20365 0.92762 0.96641 0.91315 1.17537 0.92925 0.88146 0.92747 0.94517 1.21015 1.25069 1.03448 1.05735 0.92397 1.24946 0.96692 0.95651 0.96228 1.70025 1.39388 1.06896 1.34858 0.86649 0.80939 0.77114 0.83667 1.20731 1.21285 1.19923 1.22169 0.98802 0.99740 0.89195 1.22430 1.01030 0.90877 1.03031 1.23055 0.99254 1.04083 0.99943 1.21265 1.00681 0.90906 1.01961 1.18311 0.89164 0.84979 1.02483 1.84814 1.76501 1.36925 1.32647 1.19734 0.92883 0.95041 1.06571 1.20582 0.99137 0.94333 1.01651 0.91641 0.91903 0.91757 0.86620 0.93127 0.89987 0.89618 0.91180 0.91155 0.90481 0.85609 0.76740 0.91991 0.91996 0.92313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.42 9.60 36.01 0.35 -1.08 16 2 C -0.08 -1.35 5.88 -104.64 -0.62 -1.96 16 3 C -0.13 -2.59 9.32 -39.56 -0.37 -2.95 16 4 C -0.01 -0.23 4.38 -104.65 -0.46 -0.69 16 5 C 0.10 2.53 2.10 -92.93 -0.20 2.34 16 6 H 0.04 0.96 7.63 -51.92 -0.40 0.56 16 7 C -0.51 -13.81 8.21 -34.44 -0.28 -14.09 16 8 H 0.06 1.59 7.59 -52.48 -0.40 1.19 16 9 C 0.07 1.83 5.30 -17.82 -0.09 1.74 16 10 N -0.87 -23.96 11.44 55.43 0.63 -23.33 16 11 Si 0.89 21.16 29.54 -169.99 -5.02 16.14 16 12 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 13 H -0.29 -6.80 7.11 56.52 0.40 -6.39 16 14 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 15 C -0.08 -1.83 3.87 -90.62 -0.35 -2.18 16 16 C -0.14 -2.96 9.05 -26.73 -0.24 -3.20 16 17 C -0.23 -4.46 9.87 -26.73 -0.26 -4.72 16 18 C -0.13 -2.65 8.76 -39.43 -0.35 -3.00 16 19 C 0.09 1.71 6.68 -39.22 -0.26 1.45 16 20 O -0.50 -7.89 12.55 -19.41 -0.24 -8.14 16 21 C -0.14 -2.36 5.89 -104.48 -0.62 -2.97 16 22 C -0.10 -1.30 9.38 36.01 0.34 -0.97 16 23 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 24 H 0.06 0.75 8.08 -51.93 -0.42 0.33 16 25 H 0.06 0.71 5.94 -51.93 -0.31 0.40 16 26 H 0.12 2.11 7.94 -52.49 -0.42 1.70 16 27 H 0.26 6.85 8.31 -40.82 -0.34 6.51 16 28 H 0.08 1.98 8.11 -51.93 -0.42 1.56 16 29 H 0.09 1.95 8.05 -51.93 -0.42 1.53 16 30 H 0.07 1.47 8.14 -51.93 -0.42 1.05 16 31 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 32 H 0.08 1.48 8.14 -51.93 -0.42 1.06 16 33 H 0.13 2.66 8.05 -52.48 -0.42 2.24 16 34 H 0.38 4.09 9.06 45.56 0.41 4.50 16 35 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.06 0.69 5.95 -51.93 -0.31 0.38 16 37 H 0.06 0.70 7.53 -51.93 -0.39 0.30 16 LS Contribution 306.12 15.07 4.61 4.61 Total: -1.00 -28.76 306.12 -8.17 -36.93 By element: Atomic # 1 Polarization: 10.82 SS G_CDS: -4.74 Total: 6.08 kcal Atomic # 6 Polarization: -28.88 SS G_CDS: -3.41 Total: -32.29 kcal Atomic # 7 Polarization: -23.96 SS G_CDS: 0.63 Total: -23.33 kcal Atomic # 8 Polarization: -7.89 SS G_CDS: -0.24 Total: -8.14 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -28.76 -8.17 -36.93 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260028330.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.825 kcal (2) G-P(sol) polarization free energy of solvation -28.764 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.939 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.930 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.105 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds