Wall clock time and date at job start Mon Mar 30 2020 05:49:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38292 * 119.97182 * 2 1 4 4 C 1.38240 * 120.10884 * 179.97438 * 3 2 1 5 5 C 1.50701 * 119.97166 * 180.02562 * 4 3 2 6 6 H 1.09007 * 109.47071 * 0.02562 * 5 4 3 7 7 C 1.50702 * 109.47373 * 119.99960 * 5 4 3 8 8 H 1.08003 * 119.99421 * 0.02562 * 7 5 4 9 9 C 1.37868 * 120.00608 * 180.02562 * 7 5 4 10 10 N 1.31519 * 119.99865 * 0.02562 * 9 7 5 11 11 Si 1.86797 * 120.00395 * 180.02562 * 9 7 5 12 12 H 1.48498 * 109.46970 * 90.00192 * 11 9 7 13 13 H 1.48503 * 109.47282 * 210.00093 * 11 9 7 14 14 H 1.48495 * 109.47187 * 330.00168 * 11 9 7 15 15 C 1.52995 * 109.47681 * 240.00513 * 5 4 3 16 16 C 1.52996 * 117.50300 * 128.62003 * 15 5 4 17 17 C 1.53000 * 60.00183 * 252.51157 * 16 15 5 18 18 C 1.38164 * 120.05728 * 359.77114 * 4 3 2 19 19 C 1.38712 * 119.94405 * 0.53083 * 18 4 3 20 20 O 1.35896 * 120.05761 * 179.72059 * 19 18 4 21 21 C 1.38119 * 119.97279 * 180.02562 * 2 1 3 22 22 C 1.50702 * 120.02803 * 0.02562 * 21 2 1 23 23 H 1.09004 * 109.46974 * 269.97574 * 1 2 3 24 24 H 1.08999 * 109.46863 * 29.97170 * 1 2 3 25 25 H 1.08994 * 109.47022 * 149.97741 * 1 2 3 26 26 H 1.08000 * 119.94141 * 0.02562 * 3 2 1 27 27 H 0.96995 * 120.00204 * 180.02562 * 10 9 7 28 28 H 1.08999 * 115.54972 * 274.33381 * 15 5 4 29 29 H 1.09001 * 117.50112 * 0.02562 * 16 15 5 30 30 H 1.09001 * 117.50439 * 145.02215 * 16 15 5 31 31 H 1.09001 * 117.49781 * 252.51027 * 17 16 15 32 32 H 1.08999 * 117.51831 * 107.47851 * 17 16 15 33 33 H 1.08008 * 120.02746 * 180.25201 * 18 4 3 34 34 H 0.96700 * 114.00170 * 269.72567 * 20 19 18 35 35 H 1.09004 * 109.47065 * 269.98459 * 22 21 2 36 36 H 1.09003 * 109.46691 * 29.97816 * 22 21 2 37 37 H 1.08992 * 109.47474 * 149.97916 * 22 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1979 1.1980 0.0000 4 6 3.5803 1.2013 0.0005 5 6 4.3300 2.5086 0.0011 6 1 3.6193 3.3351 0.0015 7 6 5.1957 2.5907 1.2319 8 1 5.2026 1.7773 1.9424 9 6 5.9789 3.7040 1.4510 10 7 5.9701 4.6947 0.5860 11 14 7.0525 3.8054 2.9763 12 1 8.3890 3.2301 2.6799 13 1 7.2039 5.2260 3.3815 14 1 6.4181 3.0408 4.0799 15 6 5.2098 2.5926 -1.2477 16 6 5.0944 3.8513 -2.1099 17 6 4.5132 2.5267 -2.6084 18 6 4.2752 0.0071 0.0058 19 6 3.5846 -1.1958 -0.0005 20 8 4.2657 -2.3718 -0.0010 21 6 2.1971 -1.1965 -0.0005 22 6 1.4436 -2.5016 -0.0017 23 1 -0.3633 -0.0004 1.0277 24 1 -0.3633 0.8902 -0.5134 25 1 -0.3633 -0.8897 -0.5142 26 1 1.6565 2.1325 0.0004 27 1 6.5213 5.4778 0.7399 28 1 6.1926 2.1289 -1.1626 29 1 4.3920 4.6198 -1.7871 30 1 6.0014 4.2161 -2.5919 31 1 5.0379 2.0200 -3.4184 32 1 3.4282 2.4231 -2.6138 33 1 5.3552 0.0103 0.0104 34 1 4.4629 -2.7117 -0.8846 35 1 1.2617 -2.8171 1.0257 36 1 0.4912 -2.3708 -0.5155 37 1 2.0326 -3.2608 -0.5161 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260028330.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:49:19 Heat of formation + Delta-G solvation = -28.835292 kcal Electronic energy + Delta-G solvation = -17900.293840 eV Core-core repulsion = 15221.070829 eV Total energy + Delta-G solvation = -2679.223012 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.97182 -38.66465 -37.46370 -34.93682 -34.12094 -31.77661 -30.33731 -28.10485 -26.72723 -24.81101 -22.95897 -22.79753 -21.90395 -20.33423 -18.62099 -18.46787 -16.93255 -16.72531 -16.39350 -15.94746 -15.78059 -14.96578 -14.60312 -14.39178 -13.90809 -13.78111 -13.57156 -13.43729 -13.13576 -12.89817 -12.83803 -12.42047 -12.30109 -12.18118 -12.09483 -11.90003 -11.76554 -11.60592 -11.17889 -10.63232 -10.53768 -10.20891 -9.32296 -9.09734 -8.06498 -6.19578 0.48506 0.60300 1.38432 1.40450 1.49744 2.42598 2.86610 3.18958 3.35576 3.41862 4.01821 4.09313 4.24079 4.27290 4.37389 4.48118 4.54993 4.66714 4.74878 4.83035 4.89864 4.91748 4.97002 5.06322 5.10215 5.13517 5.23702 5.32984 5.47936 5.48824 5.56672 5.63135 5.68583 5.77376 5.85690 6.09805 6.15226 6.38919 6.86892 6.95790 7.46514 8.97118 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.021892 B = 0.007340 C = 0.006672 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1278.709911 B = 3813.691820 C = 4195.757062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.075 4.075 3 C -0.152 4.152 4 C -0.033 4.033 5 C 0.111 3.889 6 H 0.006 0.994 7 C -0.531 4.531 8 H 0.042 0.958 9 C 0.026 3.974 10 N -0.893 5.893 11 Si 0.944 3.056 12 H -0.277 1.277 13 H -0.281 1.281 14 H -0.276 1.276 15 C -0.098 4.098 16 C -0.141 4.141 17 C -0.189 4.189 18 C -0.153 4.153 19 C 0.099 3.901 20 O -0.504 6.504 21 C -0.141 4.141 22 C -0.098 4.098 23 H 0.076 0.924 24 H 0.070 0.930 25 H 0.090 0.910 26 H 0.115 0.885 27 H 0.259 0.741 28 H 0.062 0.938 29 H 0.069 0.931 30 H 0.075 0.925 31 H 0.095 0.905 32 H 0.084 0.916 33 H 0.105 0.895 34 H 0.402 0.598 35 H 0.067 0.933 36 H 0.086 0.914 37 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.591 -10.660 -5.059 14.596 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.075 4.075 3 C -0.170 4.170 4 C -0.034 4.034 5 C 0.092 3.908 6 H 0.024 0.976 7 C -0.569 4.569 8 H 0.060 0.940 9 C -0.176 4.176 10 N -0.531 5.531 11 Si 0.770 3.230 12 H -0.203 1.203 13 H -0.206 1.206 14 H -0.201 1.201 15 C -0.117 4.117 16 C -0.178 4.178 17 C -0.226 4.226 18 C -0.171 4.171 19 C 0.054 3.946 20 O -0.316 6.316 21 C -0.141 4.141 22 C -0.154 4.154 23 H 0.095 0.905 24 H 0.089 0.911 25 H 0.108 0.892 26 H 0.133 0.867 27 H 0.068 0.932 28 H 0.080 0.920 29 H 0.088 0.912 30 H 0.093 0.907 31 H 0.113 0.887 32 H 0.102 0.898 33 H 0.123 0.877 34 H 0.260 0.740 35 H 0.086 0.914 36 H 0.105 0.895 37 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -8.550 -10.426 -4.492 14.212 hybrid contribution 1.324 0.677 0.485 1.564 sum -7.227 -9.749 -4.008 12.780 Atomic orbital electron populations 1.20876 0.88744 1.03874 1.03059 1.19914 0.97519 0.91334 0.98715 1.21093 0.93428 0.98151 1.04293 1.20144 0.93743 0.95568 0.93899 1.17300 0.92209 0.88870 0.92389 0.97592 1.21244 1.25851 1.03078 1.06693 0.93998 1.25581 0.97793 0.95482 0.98696 1.70122 1.39873 1.07092 1.35989 0.85782 0.79408 0.77168 0.80621 1.20331 1.20614 1.20129 1.21922 0.98241 1.01037 0.90518 1.22358 1.01194 0.90940 1.03340 1.23038 0.99600 1.01714 0.98245 1.21148 0.99770 0.91983 1.04241 1.18335 0.89993 0.84708 1.01516 1.84745 1.76366 1.35708 1.34782 1.20179 0.92413 0.96838 1.04718 1.20668 0.99948 0.92281 1.02550 0.90525 0.91087 0.89189 0.86675 0.93153 0.92007 0.91250 0.90676 0.88660 0.89790 0.87726 0.73992 0.91417 0.89534 0.91026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.41 9.60 71.24 0.68 -1.72 16 2 C -0.07 -2.34 5.88 -19.88 -0.12 -2.46 16 3 C -0.15 -5.82 9.32 22.28 0.21 -5.61 16 4 C -0.03 -1.47 4.38 -19.88 -0.09 -1.56 16 5 C 0.11 5.60 2.10 -12.29 -0.03 5.58 16 6 H 0.01 0.33 7.63 -2.38 -0.02 0.31 16 7 C -0.53 -29.78 8.21 25.60 0.21 -29.57 16 8 H 0.04 2.42 7.59 -2.91 -0.02 2.39 16 9 C 0.03 1.42 5.30 84.65 0.45 1.87 16 10 N -0.89 -50.42 11.44 21.44 0.25 -50.17 16 11 Si 0.94 44.44 29.54 68.60 2.03 46.47 16 12 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 13 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 14 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 15 C -0.10 -4.65 3.87 -10.80 -0.04 -4.69 16 16 C -0.14 -6.25 9.05 30.59 0.28 -5.97 16 17 C -0.19 -7.36 9.87 30.60 0.30 -7.06 16 18 C -0.15 -6.39 8.76 22.37 0.20 -6.19 16 19 C 0.10 3.45 6.68 22.51 0.15 3.60 16 20 O -0.50 -14.94 12.55 -92.38 -1.16 -16.10 16 21 C -0.14 -4.31 5.89 -19.77 -0.12 -4.43 16 22 C -0.10 -2.12 9.38 71.24 0.67 -1.46 16 23 H 0.08 1.57 8.14 -2.38 -0.02 1.55 16 24 H 0.07 1.47 8.08 -2.39 -0.02 1.45 16 25 H 0.09 1.53 5.94 -2.39 -0.01 1.52 16 26 H 0.12 4.29 7.94 -2.91 -0.02 4.27 16 27 H 0.26 14.03 8.31 -92.71 -0.77 13.26 16 28 H 0.06 3.13 8.11 -2.39 -0.02 3.11 16 29 H 0.07 3.27 8.05 -2.39 -0.02 3.26 16 30 H 0.07 3.19 8.14 -2.39 -0.02 3.17 16 31 H 0.10 3.24 8.14 -2.39 -0.02 3.22 16 32 H 0.08 3.16 8.14 -2.39 -0.02 3.14 16 33 H 0.10 4.68 8.05 -2.91 -0.02 4.66 16 34 H 0.40 7.70 9.06 -74.06 -0.67 7.03 16 35 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 36 H 0.09 1.46 5.95 -2.39 -0.01 1.44 16 37 H 0.07 1.38 7.53 -2.39 -0.02 1.36 16 Total: -1.00 -63.68 306.12 4.26 -59.42 By element: Atomic # 1 Polarization: 19.66 SS G_CDS: 0.39 Total: 20.05 kcal Atomic # 6 Polarization: -62.42 SS G_CDS: 2.76 Total: -59.67 kcal Atomic # 7 Polarization: -50.42 SS G_CDS: 0.25 Total: -50.17 kcal Atomic # 8 Polarization: -14.94 SS G_CDS: -1.16 Total: -16.10 kcal Atomic # 14 Polarization: 44.44 SS G_CDS: 2.03 Total: 46.47 kcal Total: -63.68 4.26 -59.42 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260028330.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.587 kcal (2) G-P(sol) polarization free energy of solvation -63.682 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.259 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.423 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.835 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds