Wall clock time and date at job start Mon Mar 30 2020 05:35:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.37982 * 119.88103 * 2 1 4 4 C 1.38244 * 120.34717 * 180.25760 * 3 2 1 5 5 C 1.50696 * 120.11477 * 179.57658 * 4 3 2 6 6 H 1.08996 * 109.47300 * 179.72425 * 5 4 3 7 7 C 1.52998 * 109.47344 * 299.72976 * 5 4 3 8 8 C 1.50703 * 109.47217 * 59.72954 * 5 4 3 9 9 H 1.08002 * 119.99951 * 273.08747 * 8 5 4 10 10 C 1.37866 * 120.00449 * 93.07751 * 8 5 4 11 11 N 1.31517 * 119.99937 * 352.53622 * 10 8 5 12 12 Si 1.86803 * 120.00337 * 172.53679 * 10 8 5 13 13 H 1.48501 * 109.46737 * 359.97438 * 12 10 8 14 14 H 1.48503 * 109.47050 * 240.00083 * 12 10 8 15 15 H 1.48500 * 109.47116 * 120.00146 * 12 10 8 16 16 C 1.38394 * 119.76795 * 359.30667 * 4 3 2 17 17 C 1.37693 * 119.98041 * 0.24428 * 16 4 3 18 18 C 1.38929 * 120.77859 * 0.38550 * 17 16 4 19 19 O 1.36142 * 111.20716 * 178.96678 * 18 17 16 20 20 C 1.43780 * 109.20785 * 19.35374 * 19 18 17 21 21 H 1.09000 * 110.74553 * 213.77640 * 20 19 18 22 22 C 1.52999 * 110.75169 * 90.60245 * 20 19 18 23 23 C 1.51639 * 132.17906 * 180.90271 * 17 16 4 24 24 H 1.09011 * 109.46978 * 270.25318 * 1 2 3 25 25 H 1.08990 * 109.47295 * 30.25088 * 1 2 3 26 26 H 1.08997 * 109.47119 * 150.25536 * 1 2 3 27 27 H 1.07994 * 119.82651 * 0.02562 * 3 2 1 28 28 H 1.08999 * 109.47288 * 175.45290 * 7 5 4 29 29 H 1.09006 * 109.47289 * 295.45215 * 7 5 4 30 30 H 1.08997 * 109.47582 * 55.45204 * 7 5 4 31 31 H 0.97003 * 119.99856 * 4.50866 * 11 10 8 32 32 H 1.08000 * 120.01036 * 180.22390 * 16 4 3 33 33 H 1.08999 * 109.46637 * 61.45556 * 22 20 19 34 34 H 1.08996 * 109.47176 * 181.45217 * 22 20 19 35 35 H 1.08994 * 109.46895 * 301.45683 * 22 20 19 36 36 H 1.09000 * 110.93514 * 282.55548 * 23 17 16 37 37 H 1.08998 * 110.93701 * 46.23021 * 23 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1944 1.1964 0.0000 4 6 3.5768 1.2076 -0.0054 5 6 4.3222 2.5173 -0.0150 6 1 5.3950 2.3248 -0.0132 7 6 3.9480 3.3080 -1.2702 8 6 3.9530 3.3145 1.2095 9 1 3.0870 3.9597 1.1929 10 6 4.7204 3.2200 2.3509 11 7 5.6846 2.3286 2.4231 12 14 4.3907 4.3583 3.7950 13 1 3.2612 5.2636 3.4637 14 1 5.6051 5.1653 4.0764 15 1 4.0442 3.5512 4.9924 16 6 4.2737 0.0120 0.0038 17 6 3.5898 -1.1830 0.0131 18 6 2.2007 -1.2072 0.0054 19 8 1.7305 -2.4848 -0.0061 20 6 2.7668 -3.3743 0.4433 21 1 2.7016 -4.3337 -0.0700 22 6 2.6960 -3.5671 1.9595 23 6 4.0592 -2.6246 0.0418 24 1 -0.3633 0.0045 1.0278 25 1 -0.3633 0.8876 -0.5177 26 1 -0.3633 -0.8922 -0.5098 27 1 1.6497 2.1289 0.0004 28 1 4.4239 4.2880 -1.2376 29 1 4.2878 2.7683 -2.1543 30 1 2.8659 3.4308 -1.3132 31 1 5.8989 1.7823 1.6507 32 1 5.3537 0.0163 0.0033 33 1 1.7383 -4.0149 2.2244 34 1 3.5050 -4.2232 2.2805 35 1 2.7943 -2.6005 2.4535 36 1 4.4036 -2.9418 -0.9425 37 1 4.8393 -2.7654 0.7899 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260032379.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:35:05 Heat of formation + Delta-G solvation = -49.832467 kcal Electronic energy + Delta-G solvation = -18064.775528 eV Core-core repulsion = 15384.642011 eV Total energy + Delta-G solvation = -2680.133518 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -42.12626 -39.16420 -36.16427 -34.54690 -33.20138 -32.41218 -30.26029 -27.74336 -27.54134 -26.61392 -24.20726 -22.72401 -21.75742 -21.33330 -18.73751 -18.07082 -17.34759 -16.89325 -16.10402 -15.63795 -15.31747 -14.86127 -14.64077 -14.46246 -14.36112 -13.99874 -13.83474 -13.46035 -13.25537 -13.06960 -13.00253 -12.87427 -12.71943 -12.62602 -12.14411 -11.98316 -11.95320 -11.78671 -11.53023 -11.29249 -10.65138 -10.43141 -9.52027 -8.79096 -8.52189 -6.26740 0.44906 0.57681 1.52242 1.60647 1.76431 2.36530 2.57115 2.87369 3.23592 3.50241 3.67399 3.94795 3.97962 4.15749 4.25363 4.35458 4.47449 4.51913 4.58699 4.66293 4.70662 4.76517 4.78623 4.80831 4.91731 4.93709 4.96152 5.10039 5.20130 5.28606 5.34660 5.42309 5.53346 5.69688 5.79950 5.88608 6.17018 6.27119 6.39462 6.68929 7.51402 8.82237 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.022790 B = 0.007328 C = 0.006848 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1228.305503 B = 3819.809613 C = 4087.879516 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C -0.114 4.114 3 C -0.095 4.095 4 C -0.068 4.068 5 C 0.048 3.952 6 H 0.013 0.987 7 C -0.119 4.119 8 C -0.589 4.589 9 H 0.048 0.952 10 C -0.030 4.030 11 N -0.937 5.937 12 Si 1.113 2.887 13 H -0.270 1.270 14 H -0.279 1.279 15 H -0.287 1.287 16 C -0.108 4.108 17 C -0.177 4.177 18 C 0.065 3.935 19 O -0.312 6.312 20 C 0.075 3.925 21 H 0.147 0.853 22 C -0.168 4.168 23 C -0.102 4.102 24 H 0.069 0.931 25 H 0.076 0.924 26 H 0.071 0.929 27 H 0.123 0.877 28 H 0.046 0.954 29 H 0.042 0.958 30 H 0.049 0.951 31 H 0.261 0.739 32 H 0.103 0.897 33 H 0.076 0.924 34 H 0.097 0.903 35 H 0.031 0.969 36 H 0.104 0.896 37 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.669 -10.133 -4.387 12.900 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.115 4.115 3 C -0.113 4.113 4 C -0.069 4.069 5 C 0.030 3.970 6 H 0.032 0.968 7 C -0.176 4.176 8 C -0.627 4.627 9 H 0.067 0.933 10 C -0.229 4.229 11 N -0.575 5.575 12 Si 0.936 3.064 13 H -0.195 1.195 14 H -0.205 1.205 15 H -0.213 1.213 16 C -0.127 4.127 17 C -0.178 4.178 18 C 0.021 3.979 19 O -0.227 6.227 20 C 0.020 3.980 21 H 0.165 0.835 22 C -0.225 4.225 23 C -0.139 4.139 24 H 0.087 0.913 25 H 0.095 0.905 26 H 0.090 0.910 27 H 0.141 0.859 28 H 0.065 0.935 29 H 0.061 0.939 30 H 0.068 0.932 31 H 0.072 0.928 32 H 0.121 0.879 33 H 0.095 0.905 34 H 0.115 0.885 35 H 0.050 0.950 36 H 0.122 0.878 37 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -6.426 -9.884 -2.911 12.143 hybrid contribution 0.188 -0.142 -1.362 1.382 sum -6.238 -10.026 -4.273 12.557 Atomic orbital electron populations 1.20625 0.89060 1.03170 1.02496 1.19404 0.97516 0.89346 1.05245 1.20571 0.93589 0.96519 1.00592 1.20567 0.94545 0.95723 0.96042 1.18013 0.94023 0.90005 0.95006 0.96837 1.21676 1.00635 0.99184 0.96122 1.22178 1.13980 1.27182 0.99352 0.93330 1.27127 0.93827 0.98216 1.03714 1.70837 1.32696 1.21554 1.32366 0.82984 0.76507 0.74293 0.72636 1.19472 1.20468 1.21332 1.20232 0.98949 0.91223 1.02274 1.20987 0.94161 0.96106 1.06523 1.19275 0.91779 0.85699 1.01170 1.86768 1.40416 1.13270 1.82266 1.23672 0.83901 0.94038 0.96369 0.83516 1.22237 1.04264 1.01882 0.94118 1.21923 0.98902 0.89036 1.04031 0.91274 0.90492 0.91039 0.85882 0.93457 0.93862 0.93151 0.92844 0.87926 0.90475 0.88453 0.95020 0.87817 0.88758 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.91 9.98 71.24 0.71 -2.20 16 2 C -0.11 -4.41 5.90 -19.69 -0.12 -4.53 16 3 C -0.09 -4.09 8.39 22.21 0.19 -3.90 16 4 C -0.07 -3.22 4.77 -19.83 -0.09 -3.31 16 5 C 0.05 2.44 2.26 -12.29 -0.03 2.41 16 6 H 0.01 0.74 6.34 -2.39 -0.02 0.73 16 7 C -0.12 -5.05 9.06 71.98 0.65 -4.39 16 8 C -0.59 -32.64 7.92 25.60 0.20 -32.43 16 9 H 0.05 2.66 7.82 -2.91 -0.02 2.64 16 10 C -0.03 -1.72 5.44 84.65 0.46 -1.26 16 11 N -0.94 -57.07 13.62 21.44 0.29 -56.78 16 12 Si 1.11 50.80 29.91 68.60 2.05 52.86 16 13 H -0.27 -11.37 7.11 99.48 0.71 -10.67 16 14 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 15 H -0.29 -12.96 7.11 99.48 0.71 -12.25 16 16 C -0.11 -4.85 9.66 22.18 0.21 -4.64 16 17 C -0.18 -6.84 6.27 -19.53 -0.12 -6.96 16 18 C 0.07 2.48 6.64 22.68 0.15 2.63 16 19 O -0.31 -10.16 10.68 -95.16 -1.02 -11.18 16 20 C 0.08 1.86 4.30 31.18 0.13 2.00 16 21 H 0.15 2.49 8.14 -2.39 -0.02 2.47 16 22 C -0.17 -3.91 9.51 71.98 0.68 -3.22 16 23 C -0.10 -2.86 6.66 30.73 0.20 -2.65 16 24 H 0.07 1.98 8.14 -2.38 -0.02 1.96 16 25 H 0.08 2.05 8.08 -2.39 -0.02 2.03 16 26 H 0.07 1.97 8.00 -2.39 -0.02 1.95 16 27 H 0.12 5.16 7.56 -2.91 -0.02 5.13 16 28 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 29 H 0.04 1.65 8.14 -2.38 -0.02 1.63 16 30 H 0.05 2.01 7.27 -2.39 -0.02 1.99 16 31 H 0.26 15.95 6.65 -92.71 -0.62 15.33 16 32 H 0.10 4.63 7.96 -2.91 -0.02 4.60 16 33 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 34 H 0.10 1.74 8.14 -2.39 -0.02 1.72 16 35 H 0.03 0.95 8.12 -2.39 -0.02 0.93 16 36 H 0.10 2.47 8.14 -2.39 -0.02 2.45 16 37 H 0.09 2.48 7.92 -2.39 -0.02 2.46 16 Total: -1.00 -66.31 305.03 5.76 -60.55 By element: Atomic # 1 Polarization: 15.83 SS G_CDS: 1.19 Total: 17.03 kcal Atomic # 6 Polarization: -65.71 SS G_CDS: 3.24 Total: -62.47 kcal Atomic # 7 Polarization: -57.07 SS G_CDS: 0.29 Total: -56.78 kcal Atomic # 8 Polarization: -10.16 SS G_CDS: -1.02 Total: -11.18 kcal Atomic # 14 Polarization: 50.80 SS G_CDS: 2.05 Total: 52.86 kcal Total: -66.31 5.76 -60.55 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260032379.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.716 kcal (2) G-P(sol) polarization free energy of solvation -66.307 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.758 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.548 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.832 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds