Wall clock time and date at job start Mon Mar 30 2020 05:35:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.37971 * 119.87948 * 2 1 4 4 C 1.38254 * 120.34921 * 180.02562 * 3 2 1 5 5 C 1.50696 * 120.11300 * 179.84178 * 4 3 2 6 6 H 1.08997 * 109.47050 * 179.97438 * 5 4 3 7 7 C 1.53008 * 109.47057 * 60.00456 * 5 4 3 8 8 C 1.50701 * 109.47482 * 300.00181 * 5 4 3 9 9 H 1.07990 * 119.99742 * 5.61757 * 8 5 4 10 10 C 1.37879 * 120.00105 * 185.61797 * 8 5 4 11 11 N 1.31508 * 120.00210 * 197.85483 * 10 8 5 12 12 Si 1.86801 * 119.99804 * 17.57448 * 10 8 5 13 13 H 1.48500 * 109.47116 * 180.27281 * 12 10 8 14 14 H 1.48498 * 109.47436 * 300.27538 * 12 10 8 15 15 H 1.48502 * 109.47065 * 60.27737 * 12 10 8 16 16 C 1.38386 * 119.76663 * 0.12099 * 4 3 2 17 17 C 1.37698 * 119.97693 * 359.42533 * 16 4 3 18 18 C 1.38930 * 120.78864 * 0.81689 * 17 16 4 19 19 O 1.36132 * 111.23137 * 179.05119 * 18 17 16 20 20 C 1.43765 * 109.25966 * 18.86208 * 19 18 17 21 21 H 1.09006 * 110.74561 * 90.64973 * 20 19 18 22 22 C 1.53006 * 110.74424 * 213.98924 * 20 19 18 23 23 C 1.51644 * 132.17988 * 180.74774 * 17 16 4 24 24 H 1.09004 * 109.46775 * 90.00505 * 1 2 3 25 25 H 1.09001 * 109.47466 * 210.00188 * 1 2 3 26 26 H 1.09003 * 109.47066 * 330.00623 * 1 2 3 27 27 H 1.07995 * 119.82894 * 0.08833 * 3 2 1 28 28 H 1.08998 * 109.47062 * 66.19148 * 7 5 4 29 29 H 1.08999 * 109.46757 * 186.19398 * 7 5 4 30 30 H 1.09000 * 109.46902 * 306.18942 * 7 5 4 31 31 H 0.97000 * 119.99934 * 354.50844 * 11 10 8 32 32 H 1.08002 * 120.01307 * 179.68153 * 16 4 3 33 33 H 1.09004 * 109.46502 * 58.54997 * 22 20 19 34 34 H 1.09004 * 109.47162 * 178.54522 * 22 20 19 35 35 H 1.08994 * 109.47849 * 298.55121 * 22 20 19 36 36 H 1.09000 * 110.93590 * 46.40443 * 23 17 16 37 37 H 1.08993 * 110.97519 * 282.72488 * 23 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1943 1.1963 0.0000 4 6 3.5768 1.2076 -0.0005 5 6 4.3221 2.5174 -0.0041 6 1 5.3950 2.3249 -0.0036 7 6 3.9481 3.3205 1.2433 8 6 3.9527 3.3023 -1.2364 9 1 3.1825 2.9362 -1.8990 10 6 4.5981 4.4878 -1.5179 11 7 4.0655 5.3415 -2.3646 12 14 6.2252 4.8847 -0.6905 13 1 6.7058 6.2110 -1.1543 14 1 6.0376 4.9134 0.7823 15 1 7.2258 3.8451 -1.0419 16 6 4.2737 0.0121 -0.0036 17 6 3.5897 -1.1830 0.0058 18 6 2.2006 -1.2074 0.0015 19 8 1.7300 -2.4847 -0.0086 20 6 2.7699 -3.3767 0.4273 21 1 2.7299 -3.5178 1.5075 22 6 2.6725 -4.7192 -0.3001 23 6 4.0592 -2.6249 0.0202 24 1 -0.3633 -0.0001 -1.0277 25 1 -0.3634 -0.8900 0.5139 26 1 -0.3633 0.8901 0.5138 27 1 1.6496 2.1288 0.0014 28 1 4.3136 2.8042 2.1310 29 1 4.4000 4.3108 1.1869 30 1 2.8640 3.4187 1.3006 31 1 3.2607 5.1039 -2.8512 32 1 5.3537 0.0163 -0.0092 33 1 2.7477 -4.5561 -1.3753 34 1 3.4845 -5.3691 0.0264 35 1 1.7163 -5.1888 -0.0699 36 1 4.8456 -2.7710 0.7606 37 1 4.3954 -2.9355 -0.9690 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260032384.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:35:07 Heat of formation + Delta-G solvation = -28.840014 kcal Electronic energy + Delta-G solvation = -17743.989588 eV Core-core repulsion = 15064.766372 eV Total energy + Delta-G solvation = -2679.223216 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.83816 -37.73033 -34.33330 -33.31751 -31.70678 -31.44999 -28.98184 -26.45424 -26.12445 -24.68285 -22.36307 -21.60380 -20.48960 -19.16533 -17.47105 -17.06729 -16.36835 -15.20536 -14.83856 -13.92293 -13.74710 -13.32498 -13.15882 -13.04731 -12.91131 -12.71695 -12.52380 -12.24551 -12.13455 -12.04096 -11.66546 -11.60127 -11.27189 -11.12526 -10.51260 -10.39403 -10.28785 -10.14094 -9.76727 -9.61641 -8.89795 -8.21406 -8.13261 -7.40210 -6.41637 -4.04759 1.83975 1.97555 3.39247 3.43287 3.48090 3.61283 4.23480 4.49709 4.60557 4.64601 4.93630 5.14570 5.24898 5.28239 5.35027 5.48044 5.57657 5.65694 5.77465 5.83859 5.93977 5.95661 6.02979 6.07779 6.16676 6.23792 6.42660 6.57934 6.64504 6.79085 6.87512 6.98107 7.08098 7.18510 7.28335 7.60274 7.72014 8.13165 8.39965 8.92608 9.62886 10.95497 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.033162 B = 0.006000 C = 0.005509 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 844.142851 B = 4665.422189 C = 5081.170373 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C -0.106 4.106 3 C -0.078 4.078 4 C -0.045 4.045 5 C 0.049 3.951 6 H 0.027 0.973 7 C -0.144 4.144 8 C -0.591 4.591 9 H 0.058 0.942 10 C 0.031 3.969 11 N -0.906 5.906 12 Si 1.045 2.955 13 H -0.286 1.286 14 H -0.273 1.273 15 H -0.284 1.284 16 C -0.088 4.088 17 C -0.175 4.175 18 C 0.074 3.926 19 O -0.307 6.307 20 C 0.076 3.924 21 H 0.080 0.920 22 C -0.147 4.147 23 C -0.102 4.102 24 H 0.063 0.937 25 H 0.060 0.940 26 H 0.063 0.937 27 H 0.130 0.870 28 H 0.023 0.977 29 H 0.055 0.945 30 H 0.045 0.955 31 H 0.267 0.733 32 H 0.117 0.883 33 H 0.065 0.935 34 H 0.075 0.925 35 H 0.065 0.935 36 H 0.084 0.916 37 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.734 -15.632 6.905 17.177 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.107 4.107 3 C -0.096 4.096 4 C -0.045 4.045 5 C 0.030 3.970 6 H 0.045 0.955 7 C -0.202 4.202 8 C -0.629 4.629 9 H 0.076 0.924 10 C -0.174 4.174 11 N -0.541 5.541 12 Si 0.874 3.126 13 H -0.212 1.212 14 H -0.200 1.200 15 H -0.211 1.211 16 C -0.107 4.107 17 C -0.176 4.176 18 C 0.030 3.970 19 O -0.222 6.222 20 C 0.020 3.980 21 H 0.098 0.902 22 C -0.204 4.204 23 C -0.139 4.139 24 H 0.082 0.918 25 H 0.079 0.921 26 H 0.082 0.918 27 H 0.148 0.852 28 H 0.042 0.958 29 H 0.074 0.926 30 H 0.064 0.936 31 H 0.077 0.923 32 H 0.135 0.865 33 H 0.084 0.916 34 H 0.093 0.907 35 H 0.084 0.916 36 H 0.103 0.897 37 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -0.805 -14.538 6.987 16.150 hybrid contribution -0.973 -1.251 -0.281 1.610 sum -1.778 -15.789 6.706 17.246 Atomic orbital electron populations 1.20611 0.91466 1.02024 1.01861 1.19093 0.95738 0.89662 1.06191 1.20702 0.94191 0.96007 0.98681 1.20183 0.93602 0.95404 0.95342 1.18134 0.94380 0.88905 0.95625 0.95494 1.22237 1.00815 1.00376 0.96725 1.21956 1.23735 1.08642 1.08576 0.92406 1.25761 1.02182 0.92084 0.97395 1.70858 1.22283 1.33551 1.27366 0.84039 0.75893 0.76229 0.76441 1.21243 1.19961 1.21055 1.20248 0.99406 0.90196 1.00805 1.20591 0.93671 0.94767 1.08544 1.19136 0.91776 0.84706 1.01384 1.86762 1.38470 1.13859 1.83101 1.23264 0.85627 0.90462 0.98642 0.90237 1.21860 1.02760 0.94580 1.01243 1.21783 0.97815 0.91521 1.02792 0.91837 0.92101 0.91772 0.85192 0.95822 0.92567 0.93629 0.92262 0.86509 0.91561 0.90650 0.91585 0.89746 0.89656 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.57 9.98 36.00 0.36 -1.22 16 2 C -0.11 -1.97 5.90 -104.35 -0.62 -2.59 16 3 C -0.08 -1.59 8.22 -39.67 -0.33 -1.92 16 4 C -0.05 -0.97 4.75 -104.56 -0.50 -1.47 16 5 C 0.05 1.15 2.07 -92.92 -0.19 0.96 16 6 H 0.03 0.63 6.54 -51.93 -0.34 0.29 16 7 C -0.14 -3.15 8.77 37.16 0.33 -2.82 16 8 C -0.59 -16.41 8.54 -34.44 -0.29 -16.70 16 9 H 0.06 1.75 7.78 -52.49 -0.41 1.34 16 10 C 0.03 0.87 5.29 -17.82 -0.09 0.78 16 11 N -0.91 -27.65 13.69 55.43 0.76 -26.89 16 12 Si 1.05 24.92 26.30 -169.99 -4.47 20.45 16 13 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 14 H -0.27 -5.99 5.75 56.52 0.33 -5.66 16 15 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 16 C -0.09 -1.71 9.66 -39.72 -0.38 -2.09 16 17 C -0.17 -3.07 6.27 -104.10 -0.65 -3.72 16 18 C 0.07 1.35 6.73 -38.95 -0.26 1.08 16 19 O -0.31 -5.00 10.68 -20.16 -0.22 -5.22 16 20 C 0.08 0.94 4.26 -25.83 -0.11 0.83 16 21 H 0.08 0.89 8.14 -51.93 -0.42 0.46 16 22 C -0.15 -1.37 9.60 37.16 0.36 -1.01 16 23 C -0.10 -1.34 6.65 -26.52 -0.18 -1.52 16 24 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 25 H 0.06 0.87 8.01 -51.93 -0.42 0.45 16 26 H 0.06 0.89 8.08 -51.93 -0.42 0.47 16 27 H 0.13 2.69 7.54 -52.49 -0.40 2.30 16 28 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 29 H 0.06 1.27 4.88 -51.93 -0.25 1.02 16 30 H 0.04 0.96 7.19 -51.93 -0.37 0.59 16 31 H 0.27 8.15 8.73 -40.82 -0.36 7.79 16 32 H 0.12 2.07 7.96 -52.49 -0.42 1.66 16 33 H 0.07 0.65 8.11 -51.93 -0.42 0.23 16 34 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 35 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 37 H 0.09 1.05 7.90 -51.93 -0.41 0.64 16 LS Contribution 298.89 15.07 4.50 4.50 Total: -1.00 -30.64 298.89 -7.60 -38.25 By element: Atomic # 1 Polarization: 5.94 SS G_CDS: -5.62 Total: 0.32 kcal Atomic # 6 Polarization: -28.85 SS G_CDS: -2.56 Total: -31.41 kcal Atomic # 7 Polarization: -27.65 SS G_CDS: 0.76 Total: -26.89 kcal Atomic # 8 Polarization: -5.00 SS G_CDS: -0.22 Total: -5.22 kcal Atomic # 14 Polarization: 24.92 SS G_CDS: -4.47 Total: 20.45 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -30.64 -7.60 -38.25 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260032384.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.405 kcal (2) G-P(sol) polarization free energy of solvation -30.641 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.236 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.604 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.245 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds