Wall clock time and date at job start Mon Mar 30 2020 05:35:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.37971 * 119.87948 * 2 1 4 4 C 1.38254 * 120.34921 * 180.02562 * 3 2 1 5 5 C 1.50696 * 120.11300 * 179.84178 * 4 3 2 6 6 H 1.08997 * 109.47050 * 179.97438 * 5 4 3 7 7 C 1.53008 * 109.47057 * 60.00456 * 5 4 3 8 8 C 1.50701 * 109.47482 * 300.00181 * 5 4 3 9 9 H 1.07990 * 119.99742 * 5.61757 * 8 5 4 10 10 C 1.37879 * 120.00105 * 185.61797 * 8 5 4 11 11 N 1.31508 * 120.00210 * 197.85483 * 10 8 5 12 12 Si 1.86801 * 119.99804 * 17.57448 * 10 8 5 13 13 H 1.48500 * 109.47116 * 180.27281 * 12 10 8 14 14 H 1.48498 * 109.47436 * 300.27538 * 12 10 8 15 15 H 1.48502 * 109.47065 * 60.27737 * 12 10 8 16 16 C 1.38386 * 119.76663 * 0.12099 * 4 3 2 17 17 C 1.37698 * 119.97693 * 359.42533 * 16 4 3 18 18 C 1.38930 * 120.78864 * 0.81689 * 17 16 4 19 19 O 1.36132 * 111.23137 * 179.05119 * 18 17 16 20 20 C 1.43765 * 109.25966 * 18.86208 * 19 18 17 21 21 H 1.09006 * 110.74561 * 90.64973 * 20 19 18 22 22 C 1.53006 * 110.74424 * 213.98924 * 20 19 18 23 23 C 1.51644 * 132.17988 * 180.74774 * 17 16 4 24 24 H 1.09004 * 109.46775 * 90.00505 * 1 2 3 25 25 H 1.09001 * 109.47466 * 210.00188 * 1 2 3 26 26 H 1.09003 * 109.47066 * 330.00623 * 1 2 3 27 27 H 1.07995 * 119.82894 * 0.08833 * 3 2 1 28 28 H 1.08998 * 109.47062 * 66.19148 * 7 5 4 29 29 H 1.08999 * 109.46757 * 186.19398 * 7 5 4 30 30 H 1.09000 * 109.46902 * 306.18942 * 7 5 4 31 31 H 0.97000 * 119.99934 * 354.50844 * 11 10 8 32 32 H 1.08002 * 120.01307 * 179.68153 * 16 4 3 33 33 H 1.09004 * 109.46502 * 58.54997 * 22 20 19 34 34 H 1.09004 * 109.47162 * 178.54522 * 22 20 19 35 35 H 1.08994 * 109.47849 * 298.55121 * 22 20 19 36 36 H 1.09000 * 110.93590 * 46.40443 * 23 17 16 37 37 H 1.08993 * 110.97519 * 282.72488 * 23 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1943 1.1963 0.0000 4 6 3.5768 1.2076 -0.0005 5 6 4.3221 2.5174 -0.0041 6 1 5.3950 2.3249 -0.0036 7 6 3.9481 3.3205 1.2433 8 6 3.9527 3.3023 -1.2364 9 1 3.1825 2.9362 -1.8990 10 6 4.5981 4.4878 -1.5179 11 7 4.0655 5.3415 -2.3646 12 14 6.2252 4.8847 -0.6905 13 1 6.7058 6.2110 -1.1543 14 1 6.0376 4.9134 0.7823 15 1 7.2258 3.8451 -1.0419 16 6 4.2737 0.0121 -0.0036 17 6 3.5897 -1.1830 0.0058 18 6 2.2006 -1.2074 0.0015 19 8 1.7300 -2.4847 -0.0086 20 6 2.7699 -3.3767 0.4273 21 1 2.7299 -3.5178 1.5075 22 6 2.6725 -4.7192 -0.3001 23 6 4.0592 -2.6249 0.0202 24 1 -0.3633 -0.0001 -1.0277 25 1 -0.3634 -0.8900 0.5139 26 1 -0.3633 0.8901 0.5138 27 1 1.6496 2.1288 0.0014 28 1 4.3136 2.8042 2.1310 29 1 4.4000 4.3108 1.1869 30 1 2.8640 3.4187 1.3006 31 1 3.2607 5.1039 -2.8512 32 1 5.3537 0.0163 -0.0092 33 1 2.7477 -4.5561 -1.3753 34 1 3.4845 -5.3691 0.0264 35 1 1.7163 -5.1888 -0.0699 36 1 4.8456 -2.7710 0.7606 37 1 4.3954 -2.9355 -0.9690 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260032384.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:35:07 Heat of formation + Delta-G solvation = -46.267300 kcal Electronic energy + Delta-G solvation = -17744.745292 eV Core-core repulsion = 15064.766372 eV Total energy + Delta-G solvation = -2679.978920 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -42.11220 -39.18648 -36.10473 -34.63554 -33.56821 -32.60866 -30.45642 -27.81973 -27.25911 -26.70863 -24.02638 -22.64244 -21.83136 -20.89051 -19.47764 -18.38330 -17.64927 -16.52229 -16.42009 -15.57782 -15.12769 -14.71440 -14.65786 -14.57153 -14.09299 -14.02930 -13.90000 -13.69097 -13.55337 -13.27495 -13.10787 -12.96141 -12.58855 -12.35035 -12.17740 -12.02320 -11.76984 -11.53980 -11.48980 -11.43693 -10.93075 -10.35911 -9.58136 -8.96330 -8.58775 -6.32462 0.38452 0.49089 1.48547 1.55772 1.74879 2.31040 2.51785 2.77022 3.09555 3.49443 3.61116 3.89722 4.03552 4.09741 4.26016 4.29467 4.42659 4.55501 4.61423 4.66950 4.71160 4.71948 4.76619 4.84359 4.91587 4.95771 5.01850 5.07932 5.20657 5.24274 5.32483 5.45374 5.46724 5.62213 5.73793 5.88223 6.05886 6.14139 6.34685 6.60759 7.44413 8.66750 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.033162 B = 0.006000 C = 0.005509 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 844.142851 B = 4665.422189 C = 5081.170373 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C -0.117 4.117 3 C -0.095 4.095 4 C -0.075 4.075 5 C 0.048 3.952 6 H 0.035 0.965 7 C -0.139 4.139 8 C -0.588 4.588 9 H 0.014 0.986 10 C -0.022 4.022 11 N -0.940 5.940 12 Si 1.084 2.916 13 H -0.292 1.292 14 H -0.239 1.239 15 H -0.264 1.264 16 C -0.097 4.097 17 C -0.177 4.177 18 C 0.071 3.929 19 O -0.317 6.317 20 C 0.069 3.931 21 H 0.096 0.904 22 C -0.142 4.142 23 C -0.098 4.098 24 H 0.066 0.934 25 H 0.073 0.927 26 H 0.072 0.928 27 H 0.113 0.887 28 H 0.053 0.947 29 H 0.047 0.953 30 H 0.039 0.961 31 H 0.249 0.751 32 H 0.132 0.868 33 H 0.058 0.942 34 H 0.104 0.896 35 H 0.071 0.929 36 H 0.111 0.889 37 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.441 -18.338 8.727 20.314 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.118 4.118 3 C -0.113 4.113 4 C -0.075 4.075 5 C 0.029 3.971 6 H 0.053 0.947 7 C -0.197 4.197 8 C -0.626 4.626 9 H 0.032 0.968 10 C -0.219 4.219 11 N -0.577 5.577 12 Si 0.905 3.095 13 H -0.218 1.218 14 H -0.164 1.164 15 H -0.189 1.189 16 C -0.115 4.115 17 C -0.177 4.177 18 C 0.026 3.974 19 O -0.233 6.233 20 C 0.014 3.986 21 H 0.114 0.886 22 C -0.199 4.199 23 C -0.135 4.135 24 H 0.085 0.915 25 H 0.092 0.908 26 H 0.091 0.909 27 H 0.131 0.869 28 H 0.072 0.928 29 H 0.066 0.934 30 H 0.058 0.942 31 H 0.058 0.942 32 H 0.150 0.850 33 H 0.077 0.923 34 H 0.123 0.877 35 H 0.090 0.910 36 H 0.130 0.870 37 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 0.467 -17.284 8.822 19.411 hybrid contribution -1.482 -0.572 -0.886 1.819 sum -1.015 -17.856 7.936 19.567 Atomic orbital electron populations 1.20635 0.89514 1.03118 1.02362 1.19344 0.97358 0.89451 1.05628 1.20610 0.94159 0.96274 1.00264 1.20105 0.94009 0.95411 0.97989 1.18062 0.95007 0.89866 0.94173 0.94709 1.22126 1.00605 0.99869 0.97063 1.22117 1.21985 1.09069 1.09448 0.96761 1.27238 1.05049 0.92198 0.97391 1.70998 1.22434 1.34858 1.29395 0.83596 0.72053 0.76262 0.77631 1.21839 1.16358 1.18904 1.20376 1.00186 0.90077 1.00819 1.21050 0.93685 0.96478 1.06521 1.19325 0.92246 0.85414 1.00400 1.86763 1.40196 1.13256 1.83074 1.23673 0.84022 0.90808 1.00100 0.88591 1.21894 1.04360 0.93185 1.00477 1.21938 0.98951 0.88253 1.04365 0.91547 0.90759 0.90906 0.86941 0.92778 0.93375 0.94156 0.94151 0.85033 0.92264 0.87694 0.90989 0.87024 0.88608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -3.00 9.98 71.24 0.71 -2.29 16 2 C -0.12 -4.34 5.90 -19.69 -0.12 -4.45 16 3 C -0.09 -4.00 8.22 22.21 0.18 -3.81 16 4 C -0.07 -3.24 4.75 -19.83 -0.09 -3.34 16 5 C 0.05 2.26 2.07 -12.28 -0.03 2.23 16 6 H 0.03 1.58 6.54 -2.39 -0.02 1.57 16 7 C -0.14 -5.95 8.77 71.98 0.63 -5.31 16 8 C -0.59 -33.77 8.54 25.60 0.22 -33.55 16 9 H 0.01 0.91 7.78 -2.92 -0.02 0.88 16 10 C -0.02 -1.25 5.29 84.66 0.45 -0.81 16 11 N -0.94 -59.66 13.69 21.45 0.29 -59.36 16 12 Si 1.08 49.59 26.30 68.60 1.80 51.39 16 13 H -0.29 -13.59 7.11 99.48 0.71 -12.88 16 14 H -0.24 -9.62 5.75 99.48 0.57 -9.05 16 15 H -0.26 -11.16 7.11 99.48 0.71 -10.45 16 16 C -0.10 -3.61 9.66 22.18 0.21 -3.40 16 17 C -0.18 -5.84 6.27 -19.53 -0.12 -5.96 16 18 C 0.07 2.47 6.73 22.68 0.15 2.62 16 19 O -0.32 -9.60 10.68 -95.06 -1.02 -10.61 16 20 C 0.07 1.46 4.26 31.18 0.13 1.59 16 21 H 0.10 1.74 8.14 -2.38 -0.02 1.72 16 22 C -0.14 -2.09 9.60 71.98 0.69 -1.39 16 23 C -0.10 -2.23 6.65 30.73 0.20 -2.02 16 24 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 25 H 0.07 2.01 8.01 -2.39 -0.02 1.99 16 26 H 0.07 2.02 8.08 -2.39 -0.02 2.00 16 27 H 0.11 4.96 7.54 -2.91 -0.02 4.94 16 28 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 29 H 0.05 2.10 4.88 -2.39 -0.01 2.08 16 30 H 0.04 1.71 7.19 -2.39 -0.02 1.70 16 31 H 0.25 16.16 8.73 -92.71 -0.81 15.35 16 32 H 0.13 4.40 7.96 -2.91 -0.02 4.38 16 33 H 0.06 0.97 8.11 -2.38 -0.02 0.95 16 34 H 0.10 0.95 8.14 -2.38 -0.02 0.93 16 35 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 36 H 0.11 1.96 8.14 -2.39 -0.02 1.94 16 37 H 0.10 2.01 7.90 -2.39 -0.02 1.99 16 Total: -1.00 -68.78 298.89 5.18 -63.60 By element: Atomic # 1 Polarization: 14.01 SS G_CDS: 0.87 Total: 14.88 kcal Atomic # 6 Polarization: -63.12 SS G_CDS: 3.23 Total: -59.89 kcal Atomic # 7 Polarization: -59.66 SS G_CDS: 0.29 Total: -59.36 kcal Atomic # 8 Polarization: -9.60 SS G_CDS: -1.02 Total: -10.61 kcal Atomic # 14 Polarization: 49.59 SS G_CDS: 1.80 Total: 51.39 kcal Total: -68.78 5.18 -63.60 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260032384.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.328 kcal (2) G-P(sol) polarization free energy of solvation -68.778 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.595 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.267 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds