Wall clock time and date at job start Mon Mar 30 2020 05:28:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86796 * 119.99964 * 2 1 4 4 H 1.48499 * 109.47432 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47534 * 300.00373 * 3 2 1 6 6 H 1.48508 * 109.47030 * 59.99938 * 3 2 1 7 7 C 1.37874 * 119.99941 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99780 * 175.00222 * 7 2 1 9 9 C 1.50700 * 120.00309 * 355.00654 * 7 2 1 10 10 O 1.42902 * 110.01404 * 305.15818 * 9 7 2 11 11 C 1.42900 * 114.00200 * 303.55186 * 10 9 7 12 12 C 1.50694 * 109.47372 * 175.01666 * 11 10 9 13 13 C 1.38235 * 120.00232 * 90.00312 * 12 11 10 14 14 C 1.38234 * 120.00107 * 180.02562 * 13 12 11 15 15 C 1.38233 * 120.00301 * 359.97438 * 14 13 12 16 16 C 1.38240 * 119.99725 * 0.25925 * 15 14 13 17 17 C 1.38235 * 119.99940 * 359.49087 * 16 15 14 18 18 C 1.54271 * 110.07271 * 66.57269 * 9 7 2 19 19 C 1.54882 * 104.19294 * 95.69901 * 18 9 7 20 20 C 1.54889 * 102.75082 * 37.94478 * 19 18 9 21 21 C 1.53869 * 110.03421 * 183.76755 * 9 7 2 22 22 H 0.96999 * 120.00225 * 359.97438 * 1 2 3 23 23 H 1.08998 * 109.46877 * 55.01518 * 11 10 9 24 24 H 1.08996 * 109.46944 * 295.02093 * 11 10 9 25 25 H 1.07997 * 119.99630 * 359.97438 * 13 12 11 26 26 H 1.07996 * 120.00161 * 179.97438 * 14 13 12 27 27 H 1.07997 * 120.00407 * 179.97438 * 15 14 13 28 28 H 1.08000 * 120.00034 * 179.72577 * 16 15 14 29 29 H 1.08006 * 120.00163 * 180.23557 * 17 16 15 30 30 H 1.08997 * 110.48506 * 214.38018 * 18 9 7 31 31 H 1.09000 * 110.48567 * 337.01919 * 18 9 7 32 32 H 1.09005 * 110.75725 * 279.62647 * 19 18 9 33 33 H 1.09002 * 110.76008 * 156.25711 * 19 18 9 34 34 H 1.09003 * 110.49037 * 203.38024 * 20 19 18 35 35 H 1.08996 * 110.49057 * 80.73268 * 20 19 18 36 36 H 1.08997 * 110.03343 * 359.94686 * 21 9 7 37 37 H 1.09000 * 110.03537 * 121.37917 * 21 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8903 2.3964 1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0814 -1.1957 -0.0820 9 6 1.2553 -2.4967 0.1125 10 8 0.4266 -2.4850 1.2766 11 6 1.1349 -2.2327 2.4918 12 6 0.1546 -2.1214 3.6308 13 6 -0.2055 -3.2484 4.3457 14 6 -1.1052 -3.1463 5.3902 15 6 -1.6445 -1.9171 5.7203 16 6 -1.2881 -0.7907 5.0023 17 6 -0.3845 -0.8920 3.9611 18 6 0.3939 -2.7231 -1.1471 19 6 1.2737 -3.6204 -2.0526 20 6 1.9541 -4.5698 -1.0354 21 6 2.2473 -3.6708 0.1835 22 1 -0.4850 0.8400 0.0004 23 1 1.6930 -1.3010 2.4003 24 1 1.8262 -3.0527 2.6862 25 1 0.2155 -4.2089 4.0875 26 1 -1.3868 -4.0269 5.9484 27 1 -2.3477 -1.8373 6.5360 28 1 -1.7128 0.1690 5.2574 29 1 -0.1031 -0.0114 3.4027 30 1 -0.5332 -3.2346 -0.8884 31 1 0.1824 -1.7743 -1.6402 32 1 2.0171 -3.0243 -2.5818 33 1 0.6578 -4.1833 -2.7541 34 1 2.8813 -4.9687 -1.4470 35 1 1.2791 -5.3796 -0.7586 36 1 3.2706 -3.2985 0.1353 37 1 2.0967 -4.2317 1.1059 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260034270.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:28:07 Heat of formation + Delta-G solvation = -32.583057 kcal Electronic energy + Delta-G solvation = -18190.893598 eV Core-core repulsion = 15511.508071 eV Total energy + Delta-G solvation = -2679.385527 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -38.79137 -37.75691 -34.54399 -32.33370 -31.01080 -30.40838 -27.61662 -27.32198 -25.16541 -23.80901 -22.05194 -20.73329 -19.61926 -18.77626 -16.72132 -16.29124 -15.04998 -14.89952 -14.60930 -14.58359 -14.14272 -13.48714 -13.01373 -12.79504 -12.60118 -12.36117 -12.22562 -11.69029 -11.26305 -10.98246 -10.91645 -10.69038 -10.48905 -10.37529 -10.23969 -9.94523 -9.87195 -9.62745 -9.52176 -8.88842 -8.45624 -8.43757 -8.18279 -7.77743 -5.98023 -4.13657 1.82698 1.88811 3.24686 3.34462 3.37677 4.23844 4.38809 5.17278 5.31456 5.33498 5.38327 5.52553 5.71295 5.77828 5.79730 5.94922 6.00366 6.11677 6.29592 6.45434 6.49139 6.49667 6.58792 6.71268 6.74919 6.82168 6.87088 6.91124 6.93455 6.98342 7.10083 7.32312 7.34776 7.46997 7.50723 7.79270 7.91207 8.26995 8.84109 9.11561 9.57897 11.03124 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.018192 B = 0.009178 C = 0.006735 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1538.756694 B = 3049.883279 C = 4156.514042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.849 5.849 2 C 0.082 3.918 3 Si 0.875 3.125 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.283 1.283 7 C -0.549 4.549 8 H 0.056 0.944 9 C 0.237 3.763 10 O -0.364 6.364 11 C 0.114 3.886 12 C -0.063 4.063 13 C -0.110 4.110 14 C -0.131 4.131 15 C -0.132 4.132 16 C -0.128 4.128 17 C -0.091 4.091 18 C -0.084 4.084 19 C -0.121 4.121 20 C -0.119 4.119 21 C -0.147 4.147 22 H 0.258 0.742 23 H 0.063 0.937 24 H 0.028 0.972 25 H 0.117 0.883 26 H 0.114 0.886 27 H 0.113 0.887 28 H 0.115 0.885 29 H 0.124 0.876 30 H 0.040 0.960 31 H 0.080 0.920 32 H 0.061 0.939 33 H 0.047 0.953 34 H 0.047 0.953 35 H 0.052 0.948 36 H 0.056 0.944 37 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.330 -4.527 5.889 7.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.484 5.484 2 C -0.124 4.124 3 Si 0.703 3.297 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.209 1.209 7 C -0.587 4.587 8 H 0.074 0.926 9 C 0.199 3.801 10 O -0.283 6.283 11 C 0.037 3.963 12 C -0.063 4.063 13 C -0.128 4.128 14 C -0.149 4.149 15 C -0.150 4.150 16 C -0.146 4.146 17 C -0.109 4.109 18 C -0.122 4.122 19 C -0.158 4.158 20 C -0.156 4.156 21 C -0.185 4.185 22 H 0.068 0.932 23 H 0.081 0.919 24 H 0.046 0.954 25 H 0.135 0.865 26 H 0.132 0.868 27 H 0.131 0.869 28 H 0.133 0.867 29 H 0.142 0.858 30 H 0.059 0.941 31 H 0.099 0.901 32 H 0.080 0.920 33 H 0.066 0.934 34 H 0.066 0.934 35 H 0.071 0.929 36 H 0.075 0.925 37 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -0.697 -4.446 5.875 7.401 hybrid contribution 0.715 1.044 0.021 1.265 sum 0.017 -3.402 5.896 6.807 Atomic orbital electron populations 1.70084 1.05556 1.25989 1.46766 1.24977 0.94644 0.98583 0.94246 0.86815 0.80559 0.84590 0.77752 1.19741 1.20962 1.20882 1.21567 0.93143 0.90789 1.53197 0.92592 1.19646 0.86666 0.90957 0.82805 1.87925 1.35715 1.91565 1.13132 1.20835 0.91529 0.99926 0.84008 1.20067 0.97595 0.92900 0.95775 1.21059 0.97917 0.98088 0.95750 1.21010 0.98396 0.97258 0.98248 1.21002 1.00657 0.93105 1.00236 1.21097 0.98631 0.98254 0.96654 1.21178 0.95778 0.98083 0.95852 1.22063 0.96042 0.98894 0.95214 1.22437 0.98924 0.97370 0.97119 1.22251 0.98861 0.97580 0.96951 1.22883 1.01031 0.98108 0.96466 0.93171 0.91859 0.95418 0.86532 0.86774 0.86893 0.86683 0.85839 0.94090 0.90149 0.91977 0.93412 0.93433 0.92946 0.92488 0.93407 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -23.33 11.54 55.43 0.64 -22.69 16 2 C 0.08 2.16 4.87 -17.82 -0.09 2.07 16 3 Si 0.88 20.48 29.54 -169.99 -5.02 15.46 16 4 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 5 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 6 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 7 C -0.55 -14.38 6.56 -34.44 -0.23 -14.61 16 8 H 0.06 1.48 7.34 -52.49 -0.39 1.09 16 9 C 0.24 5.78 0.57 -90.65 -0.05 5.73 16 10 O -0.36 -9.20 9.18 -35.23 -0.32 -9.52 16 11 C 0.11 2.54 5.45 36.00 0.20 2.74 16 12 C -0.06 -1.27 5.51 -104.62 -0.58 -1.85 16 13 C -0.11 -1.92 9.70 -39.58 -0.38 -2.31 16 14 C -0.13 -2.00 10.05 -39.58 -0.40 -2.39 16 15 C -0.13 -1.97 10.05 -39.58 -0.40 -2.37 16 16 C -0.13 -2.11 10.05 -39.58 -0.40 -2.51 16 17 C -0.09 -1.77 9.70 -39.58 -0.38 -2.16 16 18 C -0.08 -2.00 5.68 -25.07 -0.14 -2.14 16 19 C -0.12 -2.38 6.91 -24.74 -0.17 -2.55 16 20 C -0.12 -2.21 6.83 -25.07 -0.17 -2.38 16 21 C -0.15 -3.11 5.73 -25.61 -0.15 -3.26 16 22 H 0.26 6.84 8.31 -40.82 -0.34 6.50 16 23 H 0.06 1.52 6.70 -51.93 -0.35 1.18 16 24 H 0.03 0.58 6.76 -51.93 -0.35 0.22 16 25 H 0.12 1.86 8.06 -52.49 -0.42 1.44 16 26 H 0.11 1.40 8.06 -52.49 -0.42 0.98 16 27 H 0.11 1.35 8.06 -52.49 -0.42 0.92 16 28 H 0.12 1.61 8.06 -52.49 -0.42 1.19 16 29 H 0.12 2.55 8.06 -52.48 -0.42 2.13 16 30 H 0.04 0.98 8.08 -51.93 -0.42 0.56 16 31 H 0.08 2.10 6.71 -51.93 -0.35 1.75 16 32 H 0.06 1.23 8.14 -51.93 -0.42 0.80 16 33 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 36 H 0.06 1.21 7.37 -51.93 -0.38 0.82 16 37 H 0.05 0.97 6.75 -51.93 -0.35 0.62 16 LS Contribution 300.10 15.07 4.52 4.52 Total: -1.00 -28.10 300.10 -9.05 -37.14 By element: Atomic # 1 Polarization: 8.60 SS G_CDS: -5.53 Total: 3.08 kcal Atomic # 6 Polarization: -24.65 SS G_CDS: -3.34 Total: -27.98 kcal Atomic # 7 Polarization: -23.33 SS G_CDS: 0.64 Total: -22.69 kcal Atomic # 8 Polarization: -9.20 SS G_CDS: -0.32 Total: -9.52 kcal Atomic # 14 Polarization: 20.48 SS G_CDS: -5.02 Total: 15.46 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -28.10 -9.05 -37.14 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260034270.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.558 kcal (2) G-P(sol) polarization free energy of solvation -28.096 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.537 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.142 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds