Wall clock time and date at job start Mon Mar 30 2020 05:28:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86796 * 119.99964 * 2 1 4 4 H 1.48499 * 109.47432 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47534 * 300.00373 * 3 2 1 6 6 H 1.48508 * 109.47030 * 59.99938 * 3 2 1 7 7 C 1.37874 * 119.99941 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99780 * 175.00222 * 7 2 1 9 9 C 1.50700 * 120.00309 * 355.00654 * 7 2 1 10 10 O 1.42902 * 110.01404 * 305.15818 * 9 7 2 11 11 C 1.42900 * 114.00200 * 303.55186 * 10 9 7 12 12 C 1.50694 * 109.47372 * 175.01666 * 11 10 9 13 13 C 1.38235 * 120.00232 * 90.00312 * 12 11 10 14 14 C 1.38234 * 120.00107 * 180.02562 * 13 12 11 15 15 C 1.38233 * 120.00301 * 359.97438 * 14 13 12 16 16 C 1.38240 * 119.99725 * 0.25925 * 15 14 13 17 17 C 1.38235 * 119.99940 * 359.49087 * 16 15 14 18 18 C 1.54271 * 110.07271 * 66.57269 * 9 7 2 19 19 C 1.54882 * 104.19294 * 95.69901 * 18 9 7 20 20 C 1.54889 * 102.75082 * 37.94478 * 19 18 9 21 21 C 1.53869 * 110.03421 * 183.76755 * 9 7 2 22 22 H 0.96999 * 120.00225 * 359.97438 * 1 2 3 23 23 H 1.08998 * 109.46877 * 55.01518 * 11 10 9 24 24 H 1.08996 * 109.46944 * 295.02093 * 11 10 9 25 25 H 1.07997 * 119.99630 * 359.97438 * 13 12 11 26 26 H 1.07996 * 120.00161 * 179.97438 * 14 13 12 27 27 H 1.07997 * 120.00407 * 179.97438 * 15 14 13 28 28 H 1.08000 * 120.00034 * 179.72577 * 16 15 14 29 29 H 1.08006 * 120.00163 * 180.23557 * 17 16 15 30 30 H 1.08997 * 110.48506 * 214.38018 * 18 9 7 31 31 H 1.09000 * 110.48567 * 337.01919 * 18 9 7 32 32 H 1.09005 * 110.75725 * 279.62647 * 19 18 9 33 33 H 1.09002 * 110.76008 * 156.25711 * 19 18 9 34 34 H 1.09003 * 110.49037 * 203.38024 * 20 19 18 35 35 H 1.08996 * 110.49057 * 80.73268 * 20 19 18 36 36 H 1.08997 * 110.03343 * 359.94686 * 21 9 7 37 37 H 1.09000 * 110.03537 * 121.37917 * 21 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8903 2.3964 1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0814 -1.1957 -0.0820 9 6 1.2553 -2.4967 0.1125 10 8 0.4266 -2.4850 1.2766 11 6 1.1349 -2.2327 2.4918 12 6 0.1546 -2.1214 3.6308 13 6 -0.2055 -3.2484 4.3457 14 6 -1.1052 -3.1463 5.3902 15 6 -1.6445 -1.9171 5.7203 16 6 -1.2881 -0.7907 5.0023 17 6 -0.3845 -0.8920 3.9611 18 6 0.3939 -2.7231 -1.1471 19 6 1.2737 -3.6204 -2.0526 20 6 1.9541 -4.5698 -1.0354 21 6 2.2473 -3.6708 0.1835 22 1 -0.4850 0.8400 0.0004 23 1 1.6930 -1.3010 2.4003 24 1 1.8262 -3.0527 2.6862 25 1 0.2155 -4.2089 4.0875 26 1 -1.3868 -4.0269 5.9484 27 1 -2.3477 -1.8373 6.5360 28 1 -1.7128 0.1690 5.2574 29 1 -0.1031 -0.0114 3.4027 30 1 -0.5332 -3.2346 -0.8884 31 1 0.1824 -1.7743 -1.6402 32 1 2.0171 -3.0243 -2.5818 33 1 0.6578 -4.1833 -2.7541 34 1 2.8813 -4.9687 -1.4470 35 1 1.2791 -5.3796 -0.7586 36 1 3.2706 -3.2985 0.1353 37 1 2.0967 -4.2317 1.1059 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260034270.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:28:07 Heat of formation + Delta-G solvation = -46.519097 kcal Electronic energy + Delta-G solvation = -18191.497910 eV Core-core repulsion = 15511.508071 eV Total energy + Delta-G solvation = -2679.989839 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.26665 -39.42560 -36.25386 -34.34251 -32.48599 -31.72483 -29.34671 -29.15586 -26.85826 -25.64074 -23.37668 -22.17189 -21.26959 -20.60313 -18.67251 -17.61363 -16.81935 -16.75055 -16.20184 -16.04911 -15.78873 -15.20624 -14.50038 -14.29668 -14.15131 -14.06601 -13.72338 -13.40088 -12.94958 -12.85386 -12.63501 -12.43392 -12.22750 -11.90013 -11.82780 -11.59930 -11.53501 -11.43329 -11.20819 -10.81981 -10.41123 -9.77076 -9.67747 -9.60652 -8.02749 -6.23215 0.48038 0.55783 1.33961 1.38454 1.46822 2.40204 2.86954 3.20038 3.66067 4.03270 4.07603 4.16254 4.18298 4.24000 4.31827 4.46182 4.51798 4.68746 4.79615 4.85382 4.95889 4.98182 5.02882 5.11677 5.18594 5.20393 5.24537 5.28762 5.39853 5.53354 5.61825 5.64025 5.65913 5.70112 5.88718 6.00214 6.18699 6.27243 6.82067 7.20513 7.53384 8.97580 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.018192 B = 0.009178 C = 0.006735 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1538.756694 B = 3049.883279 C = 4156.514042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.875 5.875 2 C 0.043 3.957 3 Si 0.928 3.072 4 H -0.269 1.269 5 H -0.280 1.280 6 H -0.283 1.283 7 C -0.557 4.557 8 H 0.047 0.953 9 C 0.222 3.778 10 O -0.386 6.386 11 C 0.121 3.879 12 C -0.095 4.095 13 C -0.118 4.118 14 C -0.123 4.123 15 C -0.122 4.122 16 C -0.130 4.130 17 C -0.119 4.119 18 C -0.085 4.085 19 C -0.113 4.113 20 C -0.110 4.110 21 C -0.144 4.144 22 H 0.256 0.744 23 H 0.031 0.969 24 H 0.039 0.961 25 H 0.128 0.872 26 H 0.154 0.846 27 H 0.155 0.845 28 H 0.137 0.863 29 H 0.093 0.907 30 H 0.030 0.970 31 H 0.046 0.954 32 H 0.058 0.942 33 H 0.075 0.925 34 H 0.075 0.925 35 H 0.067 0.933 36 H 0.051 0.949 37 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.675 -6.066 7.178 9.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.511 5.511 2 C -0.161 4.161 3 Si 0.755 3.245 4 H -0.194 1.194 5 H -0.206 1.206 6 H -0.209 1.209 7 C -0.595 4.595 8 H 0.065 0.935 9 C 0.185 3.815 10 O -0.306 6.306 11 C 0.045 3.955 12 C -0.095 4.095 13 C -0.136 4.136 14 C -0.140 4.140 15 C -0.139 4.139 16 C -0.148 4.148 17 C -0.138 4.138 18 C -0.123 4.123 19 C -0.151 4.151 20 C -0.147 4.147 21 C -0.182 4.182 22 H 0.065 0.935 23 H 0.050 0.950 24 H 0.057 0.943 25 H 0.146 0.854 26 H 0.172 0.828 27 H 0.172 0.828 28 H 0.155 0.845 29 H 0.112 0.888 30 H 0.048 0.952 31 H 0.065 0.935 32 H 0.077 0.923 33 H 0.093 0.907 34 H 0.094 0.906 35 H 0.085 0.915 36 H 0.070 0.930 37 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -1.026 -5.988 7.160 9.390 hybrid contribution 0.781 1.521 -0.301 1.736 sum -0.245 -4.467 6.859 8.189 Atomic orbital electron populations 1.70198 1.06715 1.26311 1.47915 1.25539 0.95240 1.01220 0.94083 0.85978 0.79574 0.81378 0.77595 1.19356 1.20621 1.20876 1.21786 0.92784 0.92186 1.52756 0.93485 1.19831 0.87318 0.91480 0.82897 1.87877 1.36919 1.91635 1.14201 1.20776 0.92194 0.98547 0.84025 1.20026 0.98854 0.94387 0.96210 1.21248 0.98600 0.97509 0.96252 1.21467 0.96579 0.98933 0.97039 1.21491 1.00125 0.92094 1.00237 1.21373 0.97518 1.00290 0.95604 1.21108 0.97970 0.97062 0.97631 1.21998 0.96458 0.98061 0.95830 1.22390 0.98488 0.97032 0.97141 1.22228 1.00404 0.97018 0.95076 1.22783 0.99646 0.97500 0.98282 0.93502 0.95036 0.94348 0.85364 0.82843 0.82761 0.84477 0.88827 0.95155 0.93490 0.92317 0.90663 0.90593 0.91474 0.93019 0.92891 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -50.33 11.54 21.45 0.25 -50.08 16 2 C 0.04 2.34 4.87 84.65 0.41 2.76 16 3 Si 0.93 43.49 29.54 68.60 2.03 45.51 16 4 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 5 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 6 H -0.28 -13.14 7.11 99.48 0.71 -12.43 16 7 C -0.56 -30.21 6.56 25.60 0.17 -30.04 16 8 H 0.05 2.56 7.34 -2.91 -0.02 2.54 16 9 C 0.22 11.11 0.57 -10.82 -0.01 11.11 16 10 O -0.39 -20.23 9.18 -148.98 -1.37 -21.60 16 11 C 0.12 5.64 5.45 71.23 0.39 6.03 16 12 C -0.09 -3.90 5.51 -19.87 -0.11 -4.01 16 13 C -0.12 -3.97 9.70 22.27 0.22 -3.75 16 14 C -0.12 -3.30 10.05 22.27 0.22 -3.07 16 15 C -0.12 -3.19 10.05 22.27 0.22 -2.97 16 16 C -0.13 -4.11 10.05 22.27 0.22 -3.88 16 17 C -0.12 -4.82 9.70 22.27 0.22 -4.60 16 18 C -0.09 -4.13 5.68 31.67 0.18 -3.95 16 19 C -0.11 -4.30 6.91 31.88 0.22 -4.08 16 20 C -0.11 -3.82 6.83 31.67 0.22 -3.61 16 21 C -0.14 -6.04 5.73 31.32 0.18 -5.86 16 22 H 0.26 14.17 8.31 -92.71 -0.77 13.40 16 23 H 0.03 1.62 6.70 -2.39 -0.02 1.61 16 24 H 0.04 1.64 6.76 -2.39 -0.02 1.63 16 25 H 0.13 3.90 8.06 -2.91 -0.02 3.87 16 26 H 0.15 2.94 8.06 -2.91 -0.02 2.92 16 27 H 0.15 2.81 8.06 -2.91 -0.02 2.79 16 28 H 0.14 3.61 8.06 -2.91 -0.02 3.58 16 29 H 0.09 4.20 8.06 -2.91 -0.02 4.18 16 30 H 0.03 1.47 8.08 -2.39 -0.02 1.46 16 31 H 0.05 2.54 6.71 -2.39 -0.02 2.52 16 32 H 0.06 2.26 8.14 -2.38 -0.02 2.24 16 33 H 0.07 2.44 8.14 -2.39 -0.02 2.42 16 34 H 0.08 2.24 8.14 -2.39 -0.02 2.22 16 35 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 36 H 0.05 2.17 7.37 -2.39 -0.02 2.15 16 37 H 0.05 2.12 6.75 -2.39 -0.02 2.11 16 Total: -1.00 -63.26 300.10 4.69 -58.57 By element: Atomic # 1 Polarization: 16.49 SS G_CDS: 1.03 Total: 17.52 kcal Atomic # 6 Polarization: -52.68 SS G_CDS: 2.75 Total: -49.93 kcal Atomic # 7 Polarization: -50.33 SS G_CDS: 0.25 Total: -50.08 kcal Atomic # 8 Polarization: -20.23 SS G_CDS: -1.37 Total: -21.60 kcal Atomic # 14 Polarization: 43.49 SS G_CDS: 2.03 Total: 45.51 kcal Total: -63.26 4.69 -58.57 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260034270.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.055 kcal (2) G-P(sol) polarization free energy of solvation -63.265 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.209 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.574 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds