Wall clock time and date at job start Mon Mar 30 2020 05:34:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.37980 * 119.88151 * 2 1 4 4 C 1.38240 * 120.35447 * 179.97438 * 3 2 1 5 5 C 1.50701 * 120.11720 * 179.81331 * 4 3 2 6 6 C 1.53000 * 109.47414 * 127.18401 * 5 4 3 7 7 C 1.53005 * 109.46559 * 247.18418 * 5 4 3 8 8 C 1.50695 * 109.47208 * 7.18043 * 5 4 3 9 9 H 1.08008 * 119.99963 * 242.44034 * 8 5 4 10 10 C 1.37875 * 120.00178 * 62.43931 * 8 5 4 11 11 N 1.31517 * 120.00288 * 185.59268 * 10 8 5 12 12 Si 1.86806 * 119.99806 * 5.58559 * 10 8 5 13 13 H 1.48504 * 109.46623 * 91.72482 * 12 10 8 14 14 H 1.48494 * 109.47430 * 211.71919 * 12 10 8 15 15 H 1.48493 * 109.47263 * 331.72660 * 12 10 8 16 16 C 1.38398 * 119.76388 * 359.83077 * 4 3 2 17 17 C 1.37692 * 119.97829 * 0.02562 * 16 4 3 18 18 C 1.38924 * 120.79014 * 0.33560 * 17 16 4 19 19 O 1.36382 * 111.31643 * 179.10405 * 18 17 16 20 20 C 1.43769 * 109.09975 * 18.73658 * 19 18 17 21 21 C 1.51640 * 132.17453 * 180.36050 * 17 16 4 22 22 H 1.09004 * 109.47159 * 90.00237 * 1 2 3 23 23 H 1.09006 * 109.47194 * 209.99957 * 1 2 3 24 24 H 1.09002 * 109.47687 * 330.00075 * 1 2 3 25 25 H 1.08007 * 119.82121 * 0.02562 * 3 2 1 26 26 H 1.09001 * 109.47015 * 65.89408 * 6 5 4 27 27 H 1.08997 * 109.47159 * 185.89672 * 6 5 4 28 28 H 1.08999 * 109.46545 * 305.90053 * 6 5 4 29 29 H 1.08997 * 109.47254 * 60.00232 * 7 5 4 30 30 H 1.08999 * 109.46696 * 180.02562 * 7 5 4 31 31 H 1.09005 * 109.47054 * 299.99419 * 7 5 4 32 32 H 0.97000 * 119.99590 * 180.02562 * 11 10 8 33 33 H 1.07999 * 120.00662 * 179.97438 * 16 4 3 34 34 H 1.08998 * 110.74922 * 214.08167 * 20 19 18 35 35 H 1.09007 * 110.74504 * 90.92479 * 20 19 18 36 36 H 1.09003 * 110.94253 * 46.43641 * 21 17 16 37 37 H 1.09003 * 110.97423 * 282.76208 * 21 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1943 1.1964 0.0000 4 6 3.5767 1.2078 0.0005 5 6 4.3221 2.5175 -0.0037 6 6 5.3316 2.5336 1.1459 7 6 5.0610 2.6794 -1.3337 8 6 3.3454 3.6519 0.1695 9 1 3.2318 4.3906 -0.6102 10 6 2.5966 3.7469 1.3234 11 7 1.6668 4.6709 1.4298 12 14 2.9028 2.5629 2.7355 13 1 3.8948 3.1530 3.6699 14 1 1.6295 2.3142 3.4579 15 1 3.4277 1.2806 2.2014 16 6 4.2736 0.0121 0.0046 17 6 3.5897 -1.1829 0.0076 18 6 2.2007 -1.2073 -0.0004 19 8 1.7274 -2.4863 -0.0156 20 6 2.7682 -3.3783 0.4179 21 6 4.0592 -2.6247 0.0193 22 1 -0.3634 0.0000 -1.0277 23 1 -0.3634 -0.8900 0.5138 24 1 -0.3634 0.8900 0.5138 25 1 1.6495 2.1289 0.0004 26 1 6.0988 1.7805 0.9662 27 1 5.7960 3.5178 1.2078 28 1 4.8191 2.3140 2.0824 29 1 4.3418 2.6679 -2.1527 30 1 5.6005 3.6265 -1.3366 31 1 5.7676 1.8588 -1.4590 32 1 1.1404 4.7379 2.2418 33 1 5.3536 0.0164 0.0046 34 1 2.7012 -4.3327 -0.1042 35 1 2.7251 -3.5264 1.4971 36 1 4.8424 -2.7734 0.7628 37 1 4.4001 -2.9321 -0.9694 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260043339.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:34:42 Heat of formation + Delta-G solvation = -21.876089 kcal Electronic energy + Delta-G solvation = -18621.378924 eV Core-core repulsion = 15942.457686 eV Total energy + Delta-G solvation = -2678.921238 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -42.00823 -39.60170 -36.50366 -34.52961 -33.75123 -31.21695 -29.91402 -28.15939 -27.94656 -26.72910 -24.03730 -23.36781 -21.66512 -20.56822 -18.47328 -18.13393 -17.53948 -16.90608 -16.66784 -15.90920 -15.03884 -14.86694 -14.78047 -14.52186 -14.17038 -14.09246 -13.84912 -13.73672 -13.33989 -13.19586 -13.01047 -12.72156 -12.62202 -12.49618 -12.14894 -11.97669 -11.79314 -11.65530 -11.33227 -10.95819 -10.71095 -10.58101 -9.47689 -8.66428 -8.29756 -6.29696 0.47396 0.54891 1.29031 1.39265 1.45779 2.32661 2.44933 2.87369 3.07352 3.59398 3.78300 3.99970 4.14593 4.22289 4.35818 4.47681 4.54943 4.58759 4.60069 4.70071 4.73141 4.76371 4.91550 4.92486 4.95719 4.96514 5.07638 5.12495 5.16261 5.33555 5.38676 5.55199 5.59692 5.66057 5.77510 5.87685 6.08852 6.39128 6.40248 6.79103 7.35597 8.85525 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.024087 B = 0.010073 C = 0.008709 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1162.177581 B = 2778.999414 C = 3214.192579 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C -0.128 4.128 3 C -0.101 4.101 4 C -0.073 4.073 5 C 0.061 3.939 6 C -0.141 4.141 7 C -0.111 4.111 8 C -0.502 4.502 9 H 0.038 0.962 10 C 0.039 3.961 11 N -0.943 5.943 12 Si 0.917 3.083 13 H -0.286 1.286 14 H -0.318 1.318 15 H -0.218 1.218 16 C -0.091 4.091 17 C -0.180 4.180 18 C 0.066 3.934 19 O -0.323 6.323 20 C 0.044 3.956 21 C -0.099 4.099 22 H 0.075 0.925 23 H 0.071 0.929 24 H 0.054 0.946 25 H 0.121 0.879 26 H 0.072 0.928 27 H 0.053 0.947 28 H 0.025 0.975 29 H 0.035 0.965 30 H 0.051 0.949 31 H 0.064 0.936 32 H 0.262 0.738 33 H 0.141 0.859 34 H 0.134 0.866 35 H 0.080 0.920 36 H 0.108 0.892 37 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.817 -16.532 -1.843 17.623 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.128 4.128 3 C -0.119 4.119 4 C -0.074 4.074 5 C 0.060 3.940 6 C -0.198 4.198 7 C -0.169 4.169 8 C -0.540 4.540 9 H 0.057 0.943 10 C -0.159 4.159 11 N -0.583 5.583 12 Si 0.747 3.253 13 H -0.214 1.214 14 H -0.247 1.247 15 H -0.141 1.141 16 C -0.109 4.109 17 C -0.181 4.181 18 C 0.022 3.978 19 O -0.238 6.238 20 C -0.030 4.030 21 C -0.136 4.136 22 H 0.094 0.906 23 H 0.090 0.910 24 H 0.073 0.927 25 H 0.138 0.862 26 H 0.091 0.909 27 H 0.072 0.928 28 H 0.043 0.957 29 H 0.054 0.946 30 H 0.070 0.930 31 H 0.083 0.917 32 H 0.071 0.929 33 H 0.159 0.841 34 H 0.152 0.848 35 H 0.098 0.902 36 H 0.127 0.873 37 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 5.479 -16.561 -1.810 17.537 hybrid contribution -0.422 0.468 0.954 1.143 sum 5.056 -16.093 -0.856 16.891 Atomic orbital electron populations 1.20627 0.90492 1.02154 1.02582 1.19423 0.97036 0.90008 1.06382 1.21161 0.95430 0.96517 0.98747 1.20343 0.93600 0.95784 0.97666 1.17599 0.92650 0.89216 0.94509 1.22220 0.98688 1.01583 0.97320 1.21600 0.98725 1.00998 0.95530 1.21132 1.20758 1.09679 1.02398 0.94337 1.25549 0.94109 0.96079 1.00192 1.70041 1.23307 1.36469 1.28464 0.86613 0.75351 0.83307 0.80009 1.21361 1.24723 1.14094 1.20350 1.00382 0.89690 1.00494 1.21085 0.93272 0.96862 1.06832 1.19418 0.92537 0.85149 1.00706 1.86808 1.40297 1.13537 1.83191 1.24102 0.83908 0.93774 1.01227 1.21830 0.98904 0.88169 1.04653 0.90609 0.90994 0.92701 0.86162 0.90936 0.92753 0.95657 0.94594 0.93028 0.91659 0.92874 0.84114 0.84822 0.90220 0.87347 0.87788 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -3.65 9.98 71.23 0.71 -2.94 16 2 C -0.13 -5.23 5.90 -19.69 -0.12 -5.34 16 3 C -0.10 -4.62 6.41 22.21 0.14 -4.48 16 4 C -0.07 -3.12 2.52 -19.83 -0.05 -3.17 16 5 C 0.06 2.68 0.59 -53.67 -0.03 2.65 16 6 C -0.14 -5.64 7.38 71.98 0.53 -5.11 16 7 C -0.11 -4.19 8.29 71.98 0.60 -3.59 16 8 C -0.50 -27.58 7.47 25.60 0.19 -27.39 16 9 H 0.04 2.36 7.99 -2.91 -0.02 2.33 16 10 C 0.04 2.20 4.07 84.65 0.34 2.55 16 11 N -0.94 -58.44 13.96 21.45 0.30 -58.14 16 12 Si 0.92 45.90 22.13 68.60 1.52 47.41 16 13 H -0.29 -14.02 7.11 99.48 0.71 -13.31 16 14 H -0.32 -16.56 7.11 99.48 0.71 -15.85 16 15 H -0.22 -10.08 4.48 99.48 0.45 -9.64 16 16 C -0.09 -3.22 8.65 22.18 0.19 -3.03 16 17 C -0.18 -5.85 6.27 -19.53 -0.12 -5.97 16 18 C 0.07 2.42 6.74 22.68 0.15 2.57 16 19 O -0.32 -10.13 11.00 -97.94 -1.08 -11.20 16 20 C 0.04 0.91 8.00 72.56 0.58 1.49 16 21 C -0.10 -2.10 7.12 30.73 0.22 -1.88 16 22 H 0.08 2.47 8.14 -2.39 -0.02 2.45 16 23 H 0.07 2.33 8.01 -2.38 -0.02 2.31 16 24 H 0.05 2.05 8.08 -2.39 -0.02 2.03 16 25 H 0.12 6.37 5.54 -2.91 -0.02 6.35 16 26 H 0.07 2.31 7.27 -2.39 -0.02 2.29 16 27 H 0.05 2.15 8.14 -2.39 -0.02 2.13 16 28 H 0.02 1.07 2.79 -2.39 -0.01 1.07 16 29 H 0.03 1.40 8.14 -2.39 -0.02 1.38 16 30 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 31 H 0.06 2.00 7.87 -2.38 -0.02 1.98 16 32 H 0.26 15.54 8.31 -92.71 -0.77 14.77 16 33 H 0.14 4.11 7.23 -2.91 -0.02 4.09 16 34 H 0.13 1.80 8.14 -2.39 -0.02 1.78 16 35 H 0.08 1.48 8.14 -2.38 -0.02 1.46 16 36 H 0.11 1.82 8.14 -2.39 -0.02 1.80 16 37 H 0.10 1.84 8.14 -2.39 -0.02 1.82 16 Total: -1.00 -67.35 283.38 4.87 -62.47 By element: Atomic # 1 Polarization: 12.31 SS G_CDS: 0.79 Total: 13.10 kcal Atomic # 6 Polarization: -56.98 SS G_CDS: 3.34 Total: -53.64 kcal Atomic # 7 Polarization: -58.44 SS G_CDS: 0.30 Total: -58.14 kcal Atomic # 8 Polarization: -10.13 SS G_CDS: -1.08 Total: -11.20 kcal Atomic # 14 Polarization: 45.90 SS G_CDS: 1.52 Total: 47.41 kcal Total: -67.35 4.87 -62.47 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260043339.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.598 kcal (2) G-P(sol) polarization free energy of solvation -67.346 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.748 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.872 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.474 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds