Wall clock time and date at job start Mon Mar 30 2020 05:28:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86799 * 120.00216 * 2 1 4 4 H 1.48500 * 109.46751 * 270.00151 * 3 2 1 5 5 H 1.48502 * 109.46870 * 30.00307 * 3 2 1 6 6 H 1.48500 * 109.46853 * 150.00207 * 3 2 1 7 7 C 1.37883 * 119.99549 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99600 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00273 * 359.97438 * 7 2 1 10 10 C 1.52996 * 109.47028 * 180.02562 * 9 7 2 11 11 C 1.50705 * 109.46785 * 180.02562 * 10 9 7 12 12 C 1.38281 * 119.97519 * 90.00095 * 11 10 9 13 13 C 1.38244 * 120.11587 * 179.97438 * 12 11 10 14 14 C 1.38169 * 120.05268 * 0.02607 * 13 12 11 15 15 C 1.38704 * 119.94441 * 359.97438 * 14 13 12 16 16 O 1.35903 * 120.05911 * 180.02562 * 15 14 13 17 17 C 1.42902 * 117.00197 * 185.70934 * 16 15 14 18 18 C 1.53780 * 113.61300 * 156.68033 * 17 16 15 19 19 C 1.53778 * 87.17504 * 89.15458 * 18 17 16 20 20 C 1.53781 * 87.07962 * 25.39041 * 19 18 17 21 21 C 1.38130 * 119.96932 * 270.29569 * 11 10 9 22 22 H 0.97000 * 119.99689 * 359.97438 * 1 2 3 23 23 H 1.09004 * 109.46931 * 59.99604 * 9 7 2 24 24 H 1.09001 * 109.47135 * 300.00268 * 9 7 2 25 25 H 1.08998 * 109.47000 * 60.00353 * 10 9 7 26 26 H 1.09000 * 109.47008 * 299.99509 * 10 9 7 27 27 H 1.08005 * 119.94115 * 359.97438 * 12 11 10 28 28 H 1.08000 * 119.97172 * 179.97438 * 13 12 11 29 29 H 1.07997 * 120.02492 * 180.02562 * 14 13 12 30 30 H 1.08999 * 112.90696 * 25.42808 * 17 16 15 31 31 H 1.09007 * 113.61669 * 334.56591 * 18 17 16 32 32 H 1.09004 * 113.61420 * 203.74728 * 18 17 16 33 33 H 1.09000 * 113.61556 * 139.93388 * 19 18 17 34 34 H 1.09000 * 113.61579 * 270.84539 * 19 18 17 35 35 H 1.08997 * 113.61867 * 89.11538 * 20 19 18 36 36 H 1.08998 * 113.61426 * 219.93722 * 20 19 18 37 37 H 1.07998 * 120.02759 * 0.02812 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4400 0.7000 7 6 2.0045 -1.1942 -0.0005 8 1 3.0845 -1.1942 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 6 1.4915 -4.9672 -0.0012 12 6 1.1465 -5.5652 -1.1993 13 6 0.4556 -6.7626 -1.2033 14 6 0.1077 -7.3647 -0.0093 15 6 0.4526 -6.7670 1.1938 16 8 0.1121 -7.3574 2.3696 17 6 0.3875 -6.6266 3.5663 18 6 -0.4895 -7.0440 4.7586 19 6 0.5888 -8.0897 5.0879 20 6 1.5874 -7.1739 4.3607 21 6 1.1407 -5.5620 1.1951 22 1 -0.4850 0.8401 0.0004 23 1 0.6239 -2.5567 -0.8903 24 1 0.6246 -2.5571 0.8897 25 1 2.8718 -3.6044 0.8895 26 1 2.8718 -3.6044 -0.8906 27 1 1.4172 -5.0959 -2.1336 28 1 0.1870 -7.2274 -2.1404 29 1 -0.4316 -8.3004 -0.0130 30 1 0.4233 -5.5490 3.4066 31 1 -1.4452 -7.4794 4.4664 32 1 -0.5921 -6.2685 5.5177 33 1 0.7869 -8.1915 6.1549 34 1 0.4338 -9.0479 4.5918 35 1 2.0536 -6.4332 5.0103 36 1 2.3093 -7.7142 3.7484 37 1 1.4059 -5.0920 2.1306 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260057669.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:28:49 Heat of formation + Delta-G solvation = -8.863882 kcal Electronic energy + Delta-G solvation = -17142.775756 eV Core-core repulsion = 14464.418770 eV Total energy + Delta-G solvation = -2678.356986 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.30298 -38.43479 -36.08900 -33.88433 -32.02651 -29.65681 -28.81073 -25.80082 -25.68774 -24.86869 -22.21771 -21.96131 -20.24508 -19.41252 -17.47650 -16.28619 -15.96969 -15.72625 -15.32421 -14.77856 -14.49285 -14.43960 -13.62476 -13.21312 -12.89050 -12.57541 -12.46946 -12.29460 -12.10732 -11.40889 -11.24380 -11.23372 -10.98668 -10.90827 -10.70465 -10.52770 -10.21491 -10.16577 -9.84832 -9.57968 -9.11293 -8.37305 -8.30740 -7.77601 -6.00991 -4.04323 1.74128 1.83924 3.23698 3.31011 3.37255 3.40433 4.14940 4.44902 4.47745 4.48828 4.72459 4.87231 5.12522 5.23869 5.34479 5.36301 5.52865 5.56899 5.58817 5.74611 5.77047 5.80260 5.86047 5.94711 6.03995 6.17833 6.31336 6.38812 6.64080 6.68021 6.82614 6.96686 7.13901 7.19934 7.66323 7.71146 7.80418 7.98683 8.38951 9.02645 9.59783 11.10023 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.022373 B = 0.005088 C = 0.004427 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1251.188215 B = 5501.582988 C = 6322.718857 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.058 3.942 3 Si 0.892 3.108 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.523 4.523 8 H 0.056 0.944 9 C 0.031 3.969 10 C -0.082 4.082 11 C -0.018 4.018 12 C -0.157 4.157 13 C -0.082 4.082 14 C -0.172 4.172 15 C 0.125 3.875 16 O -0.298 6.298 17 C 0.053 3.947 18 C -0.136 4.136 19 C -0.135 4.135 20 C -0.159 4.159 21 C -0.206 4.206 22 H 0.261 0.739 23 H 0.018 0.982 24 H 0.016 0.984 25 H 0.059 0.941 26 H 0.062 0.938 27 H 0.122 0.878 28 H 0.123 0.877 29 H 0.121 0.879 30 H 0.090 0.910 31 H 0.077 0.923 32 H 0.097 0.903 33 H 0.067 0.933 34 H 0.083 0.917 35 H 0.092 0.908 36 H 0.075 0.925 37 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.798 -15.354 6.012 16.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.144 4.144 3 Si 0.720 3.280 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.561 4.561 8 H 0.074 0.926 9 C -0.006 4.006 10 C -0.119 4.119 11 C -0.018 4.018 12 C -0.176 4.176 13 C -0.100 4.100 14 C -0.191 4.191 15 C 0.081 3.919 16 O -0.212 6.212 17 C -0.004 4.004 18 C -0.173 4.173 19 C -0.173 4.173 20 C -0.197 4.197 21 C -0.224 4.224 22 H 0.070 0.930 23 H 0.037 0.963 24 H 0.035 0.965 25 H 0.077 0.923 26 H 0.080 0.920 27 H 0.140 0.860 28 H 0.141 0.859 29 H 0.139 0.861 30 H 0.108 0.892 31 H 0.096 0.904 32 H 0.115 0.885 33 H 0.086 0.914 34 H 0.101 0.899 35 H 0.111 0.889 36 H 0.093 0.907 37 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 0.554 -15.423 6.056 16.578 hybrid contribution 0.445 1.195 0.033 1.275 sum 0.999 -14.228 6.089 15.508 Atomic orbital electron populations 1.69977 1.06070 1.26627 1.50642 1.25026 0.94834 0.99241 0.95273 0.86593 0.79829 0.83438 0.78143 1.20616 1.21217 1.19859 1.21252 0.93052 0.90940 1.50863 0.92581 1.19062 0.93623 0.90379 0.97562 1.20881 0.98428 0.91232 1.01399 1.20184 0.94295 0.95405 0.91941 1.21012 1.02165 0.96336 0.98048 1.20866 0.97113 0.95253 0.96816 1.20226 1.06716 1.02274 0.89855 1.18970 0.95240 0.92343 0.85385 1.85988 1.78774 1.44429 1.12045 1.23407 0.97056 0.96539 0.83403 1.23124 0.98618 0.99546 0.96059 1.22817 0.96172 0.97989 1.00286 1.23464 0.97035 0.99991 0.99218 1.21161 1.05384 0.96563 0.99334 0.92968 0.96313 0.96543 0.92264 0.91969 0.86024 0.85918 0.86056 0.89174 0.90422 0.88496 0.91397 0.89872 0.88905 0.90669 0.85525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.02 13.29 55.43 0.74 -26.28 16 2 C 0.06 1.65 5.46 -17.82 -0.10 1.56 16 3 Si 0.89 21.60 29.54 -169.99 -5.02 16.58 16 4 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 5 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16 6 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 7 C -0.52 -14.80 9.11 -34.44 -0.31 -15.11 16 8 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16 9 C 0.03 0.80 4.95 -27.89 -0.14 0.67 16 10 C -0.08 -1.73 5.28 -27.88 -0.15 -1.88 16 11 C -0.02 -0.34 5.13 -104.64 -0.54 -0.88 16 12 C -0.16 -2.71 9.70 -39.56 -0.38 -3.10 16 13 C -0.08 -1.24 10.04 -39.60 -0.40 -1.64 16 14 C -0.17 -2.65 9.99 -39.43 -0.39 -3.04 16 15 C 0.13 2.08 6.68 -39.22 -0.26 1.82 16 16 O -0.30 -4.56 10.07 -19.44 -0.20 -4.76 16 17 C 0.05 0.68 3.76 -25.83 -0.10 0.59 16 18 C -0.14 -1.42 7.90 -25.92 -0.20 -1.62 16 19 C -0.14 -1.30 8.02 -25.92 -0.21 -1.51 16 20 C -0.16 -1.73 7.92 -25.83 -0.20 -1.94 16 21 C -0.21 -3.67 8.67 -39.43 -0.34 -4.01 16 22 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 23 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 24 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 25 H 0.06 1.20 8.09 -51.93 -0.42 0.78 16 26 H 0.06 1.26 8.08 -51.93 -0.42 0.84 16 27 H 0.12 1.97 8.06 -52.48 -0.42 1.54 16 28 H 0.12 1.47 8.06 -52.49 -0.42 1.04 16 29 H 0.12 1.61 8.06 -52.49 -0.42 1.19 16 30 H 0.09 1.24 5.95 -51.93 -0.31 0.93 16 31 H 0.08 0.82 8.14 -51.92 -0.42 0.39 16 32 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 35 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 36 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 37 H 0.13 2.15 5.91 -52.49 -0.31 1.84 16 LS Contribution 310.22 15.07 4.67 4.67 Total: -1.00 -30.75 310.22 -9.18 -39.93 By element: Atomic # 1 Polarization: 5.60 SS G_CDS: -5.65 Total: -0.05 kcal Atomic # 6 Polarization: -26.37 SS G_CDS: -3.73 Total: -30.09 kcal Atomic # 7 Polarization: -27.02 SS G_CDS: 0.74 Total: -26.28 kcal Atomic # 8 Polarization: -4.56 SS G_CDS: -0.20 Total: -4.76 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -30.75 -9.18 -39.93 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260057669.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.068 kcal (2) G-P(sol) polarization free energy of solvation -30.748 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.319 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.183 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.931 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds