Wall clock time and date at job start Mon Mar 30 2020 05:28:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86799 * 120.00216 * 2 1 4 4 H 1.48500 * 109.46751 * 270.00151 * 3 2 1 5 5 H 1.48502 * 109.46870 * 30.00307 * 3 2 1 6 6 H 1.48500 * 109.46853 * 150.00207 * 3 2 1 7 7 C 1.37883 * 119.99549 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99600 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00273 * 359.97438 * 7 2 1 10 10 C 1.52996 * 109.47028 * 180.02562 * 9 7 2 11 11 C 1.50705 * 109.46785 * 180.02562 * 10 9 7 12 12 C 1.38281 * 119.97519 * 90.00095 * 11 10 9 13 13 C 1.38244 * 120.11587 * 179.97438 * 12 11 10 14 14 C 1.38169 * 120.05268 * 0.02607 * 13 12 11 15 15 C 1.38704 * 119.94441 * 359.97438 * 14 13 12 16 16 O 1.35903 * 120.05911 * 180.02562 * 15 14 13 17 17 C 1.42902 * 117.00197 * 185.70934 * 16 15 14 18 18 C 1.53780 * 113.61300 * 156.68033 * 17 16 15 19 19 C 1.53778 * 87.17504 * 89.15458 * 18 17 16 20 20 C 1.53781 * 87.07962 * 25.39041 * 19 18 17 21 21 C 1.38130 * 119.96932 * 270.29569 * 11 10 9 22 22 H 0.97000 * 119.99689 * 359.97438 * 1 2 3 23 23 H 1.09004 * 109.46931 * 59.99604 * 9 7 2 24 24 H 1.09001 * 109.47135 * 300.00268 * 9 7 2 25 25 H 1.08998 * 109.47000 * 60.00353 * 10 9 7 26 26 H 1.09000 * 109.47008 * 299.99509 * 10 9 7 27 27 H 1.08005 * 119.94115 * 359.97438 * 12 11 10 28 28 H 1.08000 * 119.97172 * 179.97438 * 13 12 11 29 29 H 1.07997 * 120.02492 * 180.02562 * 14 13 12 30 30 H 1.08999 * 112.90696 * 25.42808 * 17 16 15 31 31 H 1.09007 * 113.61669 * 334.56591 * 18 17 16 32 32 H 1.09004 * 113.61420 * 203.74728 * 18 17 16 33 33 H 1.09000 * 113.61556 * 139.93388 * 19 18 17 34 34 H 1.09000 * 113.61579 * 270.84539 * 19 18 17 35 35 H 1.08997 * 113.61867 * 89.11538 * 20 19 18 36 36 H 1.08998 * 113.61426 * 219.93722 * 20 19 18 37 37 H 1.07998 * 120.02759 * 0.02812 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4400 0.7000 7 6 2.0045 -1.1942 -0.0005 8 1 3.0845 -1.1942 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 6 1.4915 -4.9672 -0.0012 12 6 1.1465 -5.5652 -1.1993 13 6 0.4556 -6.7626 -1.2033 14 6 0.1077 -7.3647 -0.0093 15 6 0.4526 -6.7670 1.1938 16 8 0.1121 -7.3574 2.3696 17 6 0.3875 -6.6266 3.5663 18 6 -0.4895 -7.0440 4.7586 19 6 0.5888 -8.0897 5.0879 20 6 1.5874 -7.1739 4.3607 21 6 1.1407 -5.5620 1.1951 22 1 -0.4850 0.8401 0.0004 23 1 0.6239 -2.5567 -0.8903 24 1 0.6246 -2.5571 0.8897 25 1 2.8718 -3.6044 0.8895 26 1 2.8718 -3.6044 -0.8906 27 1 1.4172 -5.0959 -2.1336 28 1 0.1870 -7.2274 -2.1404 29 1 -0.4316 -8.3004 -0.0130 30 1 0.4233 -5.5490 3.4066 31 1 -1.4452 -7.4794 4.4664 32 1 -0.5921 -6.2685 5.5177 33 1 0.7869 -8.1915 6.1549 34 1 0.4338 -9.0479 4.5918 35 1 2.0536 -6.4332 5.0103 36 1 2.3093 -7.7142 3.7484 37 1 1.4059 -5.0920 2.1306 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260057669.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:28:48 Heat of formation + Delta-G solvation = -24.413500 kcal Electronic energy + Delta-G solvation = -17143.450038 eV Core-core repulsion = 14464.418770 eV Total energy + Delta-G solvation = -2679.031268 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.44707 -39.59988 -37.24415 -35.75787 -33.86884 -31.06954 -30.41960 -27.18199 -26.64277 -26.28674 -23.76424 -23.36166 -21.81696 -20.44357 -18.83348 -18.31518 -17.08597 -16.89162 -16.56961 -16.46421 -15.81341 -15.61476 -14.92024 -14.68042 -14.55802 -14.11458 -13.83365 -13.58451 -13.36322 -13.02176 -12.85154 -12.69946 -12.48946 -12.27934 -11.99772 -11.76829 -11.72835 -11.57057 -11.27009 -11.19307 -11.04669 -10.57740 -9.70496 -9.08050 -8.21162 -6.33800 0.42783 0.51499 1.39869 1.41449 1.52649 2.14177 2.40060 2.84400 3.11655 3.57550 3.59017 3.83327 3.88913 3.91672 4.03039 4.15123 4.34159 4.45015 4.54936 4.69040 4.74095 4.77398 4.80215 4.82286 4.95802 4.99517 5.01975 5.12850 5.21563 5.35680 5.38752 5.46495 5.49771 5.57232 5.80968 5.85385 5.92041 6.20227 6.48452 6.82723 7.35896 8.90518 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.022373 B = 0.005088 C = 0.004427 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1251.188215 B = 5501.582988 C = 6322.718857 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.000 4.000 3 Si 0.967 3.033 4 H -0.271 1.271 5 H -0.282 1.282 6 H -0.262 1.262 7 C -0.545 4.545 8 H 0.063 0.937 9 C 0.039 3.961 10 C -0.067 4.067 11 C -0.045 4.045 12 C -0.170 4.170 13 C -0.073 4.073 14 C -0.171 4.171 15 C 0.119 3.881 16 O -0.303 6.303 17 C 0.031 3.969 18 C -0.130 4.130 19 C -0.125 4.125 20 C -0.156 4.156 21 C -0.218 4.218 22 H 0.264 0.736 23 H -0.009 1.009 24 H -0.014 1.014 25 H 0.061 0.939 26 H 0.068 0.932 27 H 0.128 0.872 28 H 0.161 0.839 29 H 0.148 0.852 30 H 0.073 0.927 31 H 0.076 0.924 32 H 0.113 0.887 33 H 0.090 0.910 34 H 0.080 0.920 35 H 0.106 0.894 36 H 0.066 0.934 37 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.344 -16.187 6.322 17.429 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.197 4.197 3 Si 0.791 3.209 4 H -0.196 1.196 5 H -0.207 1.207 6 H -0.186 1.186 7 C -0.583 4.583 8 H 0.082 0.918 9 C 0.002 3.998 10 C -0.105 4.105 11 C -0.045 4.045 12 C -0.189 4.189 13 C -0.091 4.091 14 C -0.189 4.189 15 C 0.074 3.926 16 O -0.217 6.217 17 C -0.026 4.026 18 C -0.168 4.168 19 C -0.162 4.162 20 C -0.194 4.194 21 C -0.237 4.237 22 H 0.073 0.927 23 H 0.009 0.991 24 H 0.004 0.996 25 H 0.079 0.921 26 H 0.087 0.913 27 H 0.145 0.855 28 H 0.178 0.822 29 H 0.166 0.834 30 H 0.091 0.909 31 H 0.094 0.906 32 H 0.131 0.869 33 H 0.108 0.892 34 H 0.098 0.902 35 H 0.124 0.876 36 H 0.085 0.915 37 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 1.112 -16.271 6.372 17.510 hybrid contribution 0.219 1.388 -0.045 1.406 sum 1.331 -14.883 6.326 16.226 Atomic orbital electron populations 1.70119 1.07936 1.27836 1.51502 1.26008 0.95737 1.03443 0.94549 0.85414 0.78651 0.78195 0.78596 1.19636 1.20748 1.18589 1.21693 0.93651 0.92094 1.50840 0.91843 1.18883 0.93910 0.92318 0.94684 1.20603 0.97382 0.90745 1.01751 1.20074 0.95965 0.95126 0.93336 1.21208 1.02711 0.97395 0.97556 1.21248 0.95389 0.94078 0.98365 1.20647 1.05909 1.02965 0.89385 1.19162 0.94945 0.91970 0.86540 1.85977 1.78729 1.44680 1.12272 1.23754 0.99694 0.95703 0.83435 1.23186 0.98406 1.00227 0.94944 1.22775 0.94777 0.97234 1.01440 1.23488 0.96427 1.00456 0.99001 1.21200 1.06140 0.97438 0.98925 0.92734 0.99065 0.99555 0.92065 0.91324 0.85451 0.82175 0.83428 0.90871 0.90559 0.86856 0.89166 0.90172 0.87586 0.91512 0.85843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.71 13.29 21.45 0.28 -57.42 16 2 C 0.00 0.02 5.46 84.66 0.46 0.49 16 3 Si 0.97 44.39 29.54 68.60 2.03 46.42 16 4 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 5 H -0.28 -12.65 7.11 99.48 0.71 -11.95 16 6 H -0.26 -11.42 7.11 99.48 0.71 -10.71 16 7 C -0.54 -31.44 9.11 25.60 0.23 -31.21 16 8 H 0.06 3.48 7.74 -2.91 -0.02 3.45 16 9 C 0.04 2.14 4.95 29.85 0.15 2.29 16 10 C -0.07 -2.93 5.28 29.85 0.16 -2.77 16 11 C -0.04 -1.74 5.13 -19.88 -0.10 -1.84 16 12 C -0.17 -5.81 9.70 22.28 0.22 -5.60 16 13 C -0.07 -2.05 10.04 22.25 0.22 -1.83 16 14 C -0.17 -4.94 9.99 22.36 0.22 -4.72 16 15 C 0.12 3.91 6.68 22.51 0.15 4.06 16 16 O -0.30 -9.12 10.07 -92.46 -0.93 -10.05 16 17 C 0.03 0.79 3.76 31.18 0.12 0.91 16 18 C -0.13 -2.54 7.90 31.12 0.25 -2.30 16 19 C -0.13 -2.16 8.02 31.12 0.25 -1.91 16 20 C -0.16 -3.24 7.92 31.18 0.25 -3.00 16 21 C -0.22 -7.98 8.67 22.37 0.19 -7.79 16 22 H 0.26 15.26 8.31 -92.71 -0.77 14.49 16 23 H -0.01 -0.54 8.14 -2.39 -0.02 -0.56 16 24 H -0.01 -0.83 8.14 -2.39 -0.02 -0.85 16 25 H 0.06 2.57 8.09 -2.39 -0.02 2.55 16 26 H 0.07 2.83 8.08 -2.39 -0.02 2.81 16 27 H 0.13 4.08 8.06 -2.91 -0.02 4.06 16 28 H 0.16 3.25 8.06 -2.91 -0.02 3.23 16 29 H 0.15 3.47 8.06 -2.91 -0.02 3.44 16 30 H 0.07 2.11 5.95 -2.39 -0.01 2.09 16 31 H 0.08 1.51 8.14 -2.38 -0.02 1.49 16 32 H 0.11 1.82 8.14 -2.38 -0.02 1.80 16 33 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 34 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 35 H 0.11 1.89 8.14 -2.39 -0.02 1.87 16 36 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 37 H 0.12 4.44 5.91 -2.91 -0.02 4.42 16 Total: -1.00 -67.04 310.22 5.18 -61.86 By element: Atomic # 1 Polarization: 13.39 SS G_CDS: 1.03 Total: 14.42 kcal Atomic # 6 Polarization: -57.99 SS G_CDS: 2.77 Total: -55.22 kcal Atomic # 7 Polarization: -57.71 SS G_CDS: 0.28 Total: -57.42 kcal Atomic # 8 Polarization: -9.12 SS G_CDS: -0.93 Total: -10.05 kcal Atomic # 14 Polarization: 44.39 SS G_CDS: 2.03 Total: 46.42 kcal Total: -67.04 5.18 -61.86 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260057669.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.445 kcal (2) G-P(sol) polarization free energy of solvation -67.037 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.592 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.859 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds