Wall clock time and date at job start Mon Mar 30 2020 05:31:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38259 * 120.11416 * 2 1 4 4 C 1.37935 * 119.76857 * 179.91614 * 3 2 1 5 5 C 1.38910 * 120.54689 * 359.97438 * 4 3 2 6 6 C 1.37666 * 119.68347 * 0.17269 * 5 4 3 7 7 C 1.37932 * 120.11109 * 180.02562 * 2 1 3 8 8 C 1.50632 * 122.56662 * 179.69727 * 6 5 4 9 9 C 1.52734 * 110.59135 * 17.53654 * 8 6 5 10 10 C 1.53326 * 108.37521 * 308.94204 * 9 8 6 11 11 H 1.09001 * 109.68522 * 310.20374 * 10 9 8 12 12 C 1.52998 * 109.71578 * 189.66237 * 10 9 8 13 13 C 1.50631 * 117.74794 * 180.24608 * 5 4 3 14 14 O 1.42902 * 109.22765 * 77.21484 * 13 5 4 15 15 C 1.50699 * 109.24912 * 317.76698 * 13 5 4 16 16 H 1.08001 * 120.00138 * 124.13525 * 15 13 5 17 17 C 1.37871 * 120.00272 * 304.13002 * 15 13 5 18 18 N 1.31517 * 120.00465 * 160.29516 * 17 15 13 19 19 Si 1.86807 * 119.99966 * 340.29749 * 17 15 13 20 20 H 1.48500 * 109.47080 * 275.53969 * 19 17 15 21 21 H 1.48506 * 109.46810 * 35.54288 * 19 17 15 22 22 H 1.48501 * 109.47103 * 155.54221 * 19 17 15 23 23 H 1.08999 * 109.47306 * 269.97946 * 1 2 3 24 24 H 1.09004 * 109.46785 * 29.97724 * 1 2 3 25 25 H 1.09005 * 109.47086 * 149.97766 * 1 2 3 26 26 H 1.07996 * 120.11779 * 359.93704 * 3 2 1 27 27 H 1.07998 * 119.72722 * 179.97438 * 4 3 2 28 28 H 1.07996 * 119.73107 * 359.97438 * 7 2 1 29 29 H 1.09008 * 109.25160 * 257.25067 * 8 6 5 30 30 H 1.08997 * 109.25428 * 137.82417 * 8 6 5 31 31 H 1.09002 * 109.68338 * 189.21741 * 9 8 6 32 32 H 1.09002 * 109.68064 * 68.66084 * 9 8 6 33 33 H 1.09007 * 109.47095 * 301.06885 * 12 10 9 34 34 H 1.08996 * 109.47215 * 61.06631 * 12 10 9 35 35 H 1.09003 * 109.47051 * 181.06862 * 12 10 9 36 36 H 0.96707 * 114.00070 * 295.93185 * 14 13 5 37 37 H 0.96997 * 120.00091 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2007 1.1960 0.0000 4 6 3.5800 1.1877 0.0018 5 6 4.2788 -0.0129 0.0041 6 6 3.5881 -1.2037 0.0010 7 6 2.1990 -1.1932 -0.0005 8 6 4.2794 -2.5420 -0.0035 9 6 5.7375 -2.3949 0.4267 10 6 6.3808 -1.2875 -0.4163 11 1 6.1725 -1.4618 -1.4720 12 6 7.8931 -1.2750 -0.1847 13 6 5.7837 0.0516 0.0116 14 8 6.2345 0.3688 1.3300 15 6 6.2397 1.1263 -0.9414 16 1 6.8779 1.9238 -0.5906 17 6 5.8423 1.0914 -2.2611 18 7 5.8960 2.1826 -2.9932 19 14 5.2273 -0.5060 -3.0094 20 1 6.3844 -1.3132 -3.4728 21 1 4.4673 -1.2707 -1.9881 22 1 4.3413 -0.2037 -4.1622 23 1 -0.3634 -0.0004 1.0276 24 1 -0.3633 0.8902 -0.5135 25 1 -0.3633 -0.8898 -0.5142 26 1 1.6645 2.1334 -0.0010 27 1 4.1212 2.1223 0.0013 28 1 1.6564 -2.1270 -0.0005 29 1 4.2418 -2.9626 -1.0085 30 1 3.7673 -3.2134 0.6857 31 1 6.2652 -3.3345 0.2630 32 1 5.7835 -2.1265 1.4822 33 1 8.0973 -1.1098 0.8733 34 1 8.3155 -2.2320 -0.4911 35 1 8.3439 -0.4744 -0.7711 36 1 5.9601 1.2427 1.6400 37 1 5.6168 2.1579 -3.9218 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260090150.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:31:58 Heat of formation + Delta-G solvation = -28.352131 kcal Electronic energy + Delta-G solvation = -19041.360436 eV Core-core repulsion = 16362.158376 eV Total energy + Delta-G solvation = -2679.202060 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.86905 -36.93045 -34.45914 -32.68018 -31.97809 -31.05025 -28.47762 -27.68315 -25.23501 -23.86356 -22.34023 -20.80323 -20.36669 -18.87284 -16.91229 -16.16816 -15.15263 -14.79436 -14.38389 -14.16171 -13.59196 -13.50076 -13.06874 -12.84250 -12.76074 -12.55809 -12.25715 -12.03052 -11.73515 -11.43047 -11.29223 -11.00485 -10.90111 -10.63617 -10.50427 -10.28993 -10.11505 -9.79983 -9.35654 -8.95240 -8.70895 -8.29748 -7.96091 -7.59043 -6.24413 -4.19803 2.07276 2.13581 3.27081 3.39374 3.43342 4.36931 4.45616 5.05022 5.20432 5.35810 5.45233 5.56079 5.58569 5.65670 5.70499 5.84217 5.91144 5.96836 6.09922 6.10527 6.18470 6.30314 6.35022 6.48703 6.53936 6.59732 6.71301 6.77732 6.89357 7.01416 7.13570 7.19913 7.25314 7.33670 7.50729 7.65218 7.82396 8.35864 8.64638 8.93534 9.46162 10.86774 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.020308 B = 0.012604 C = 0.010607 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1378.424757 B = 2221.061802 C = 2639.016537 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.104 4.104 3 C -0.140 4.140 4 C -0.078 4.078 5 C -0.078 4.078 6 C -0.067 4.067 7 C -0.141 4.141 8 C -0.078 4.078 9 C -0.116 4.116 10 C -0.080 4.080 11 H 0.064 0.936 12 C -0.126 4.126 13 C 0.273 3.727 14 O -0.563 6.563 15 C -0.552 4.552 16 H 0.082 0.918 17 C 0.095 3.905 18 N -0.877 5.877 19 Si 0.832 3.168 20 H -0.280 1.280 21 H -0.219 1.219 22 H -0.301 1.301 23 H 0.061 0.939 24 H 0.060 0.940 25 H 0.057 0.943 26 H 0.111 0.889 27 H 0.131 0.869 28 H 0.107 0.893 29 H 0.067 0.933 30 H 0.063 0.937 31 H 0.053 0.947 32 H 0.070 0.930 33 H 0.056 0.944 34 H 0.031 0.969 35 H 0.064 0.936 36 H 0.365 0.635 37 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.186 -6.406 5.766 10.609 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.104 4.104 3 C -0.158 4.158 4 C -0.095 4.095 5 C -0.079 4.079 6 C -0.067 4.067 7 C -0.159 4.159 8 C -0.115 4.115 9 C -0.153 4.153 10 C -0.099 4.099 11 H 0.081 0.919 12 C -0.184 4.184 13 C 0.232 3.768 14 O -0.368 6.368 15 C -0.588 4.588 16 H 0.100 0.900 17 C -0.110 4.110 18 N -0.512 5.512 19 Si 0.662 3.338 20 H -0.207 1.207 21 H -0.142 1.142 22 H -0.230 1.230 23 H 0.080 0.920 24 H 0.079 0.921 25 H 0.076 0.924 26 H 0.129 0.871 27 H 0.148 0.852 28 H 0.125 0.875 29 H 0.085 0.915 30 H 0.081 0.919 31 H 0.072 0.928 32 H 0.089 0.911 33 H 0.075 0.925 34 H 0.050 0.950 35 H 0.083 0.917 36 H 0.210 0.790 37 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -5.956 -6.910 5.537 10.672 hybrid contribution -0.657 -0.167 -0.933 1.153 sum -6.613 -7.078 4.604 10.725 Atomic orbital electron populations 1.20684 0.92217 1.01923 1.01403 1.19640 0.95157 0.93513 1.02087 1.20898 0.94650 0.96732 1.03558 1.21314 0.93080 0.98964 0.96190 1.20859 0.98702 0.91588 0.96761 1.19566 0.92953 0.94845 0.99306 1.20811 0.93641 0.96812 1.04649 1.20508 0.96088 0.94010 1.00921 1.21667 0.94240 0.98408 1.01024 1.21403 0.96087 0.94388 0.97980 0.91882 1.21534 0.94990 0.99885 1.01962 1.17839 0.84312 0.92962 0.81657 1.86323 1.78987 1.38489 1.33005 1.21347 1.33236 1.10241 0.94003 0.90038 1.24784 0.93554 0.95458 0.97182 1.69992 1.45820 1.26646 1.08759 0.87840 0.79720 0.86270 0.80006 1.20684 1.14245 1.22955 0.91981 0.92115 0.92352 0.87108 0.85157 0.87496 0.91474 0.91884 0.92803 0.91137 0.92501 0.95003 0.91693 0.78958 0.92503 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.41 10.02 36.01 0.36 -1.05 16 2 C -0.10 -1.82 5.87 -104.73 -0.61 -2.43 16 3 C -0.14 -2.64 9.71 -39.68 -0.39 -3.02 16 4 C -0.08 -1.65 8.79 -39.44 -0.35 -2.00 16 5 C -0.08 -1.70 3.09 -104.62 -0.32 -2.03 16 6 C -0.07 -1.33 4.16 -104.61 -0.44 -1.77 16 7 C -0.14 -2.56 9.27 -39.44 -0.37 -2.92 16 8 C -0.08 -1.40 5.18 -28.05 -0.15 -1.54 16 9 C -0.12 -2.13 5.27 -26.70 -0.14 -2.27 16 10 C -0.08 -1.72 1.60 -90.59 -0.14 -1.87 16 11 H 0.06 1.45 2.68 -51.93 -0.14 1.31 16 12 C -0.13 -2.55 8.81 37.16 0.33 -2.22 16 13 C 0.27 6.17 0.32 -93.09 -0.03 6.14 16 14 O -0.56 -11.99 11.36 -35.23 -0.40 -12.39 16 15 C -0.55 -14.49 6.70 -34.44 -0.23 -14.72 16 16 H 0.08 2.34 8.06 -52.49 -0.42 1.92 16 17 C 0.10 2.63 5.01 -17.82 -0.09 2.54 16 18 N -0.88 -25.75 13.96 55.43 0.77 -24.98 16 19 Si 0.83 20.72 23.70 -169.99 -4.03 16.69 16 20 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 21 H -0.22 -5.02 2.22 56.52 0.13 -4.89 16 22 H -0.30 -7.83 7.11 56.52 0.40 -7.43 16 23 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 24 H 0.06 0.76 8.09 -51.93 -0.42 0.34 16 25 H 0.06 0.71 8.09 -51.93 -0.42 0.29 16 26 H 0.11 1.83 8.06 -52.49 -0.42 1.40 16 27 H 0.13 2.89 7.27 -52.49 -0.38 2.51 16 28 H 0.11 1.67 8.05 -52.49 -0.42 1.24 16 29 H 0.07 1.19 7.30 -51.92 -0.38 0.81 16 30 H 0.06 0.96 8.13 -51.93 -0.42 0.54 16 31 H 0.05 0.87 8.13 -51.93 -0.42 0.45 16 32 H 0.07 1.31 7.66 -51.93 -0.40 0.92 16 33 H 0.06 1.11 7.47 -51.93 -0.39 0.72 16 34 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.06 1.42 7.52 -51.93 -0.39 1.03 16 36 H 0.36 6.89 8.99 45.56 0.41 7.30 16 37 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 LS Contribution 279.32 15.07 4.21 4.21 Total: -1.00 -29.28 279.32 -6.89 -36.17 By element: Atomic # 1 Polarization: 14.34 SS G_CDS: -4.88 Total: 9.46 kcal Atomic # 6 Polarization: -26.60 SS G_CDS: -2.56 Total: -29.16 kcal Atomic # 7 Polarization: -25.75 SS G_CDS: 0.77 Total: -24.98 kcal Atomic # 8 Polarization: -11.99 SS G_CDS: -0.40 Total: -12.39 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -4.03 Total: 16.69 kcal Total LS contribution 4.21 Total: 4.21 kcal Total: -29.28 -6.89 -36.17 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260090150.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.818 kcal (2) G-P(sol) polarization free energy of solvation -29.285 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.467 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.170 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds