Wall clock time and date at job start Mon Mar 30 2020 05:31:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38274 * 120.11294 * 2 1 4 4 C 1.37923 * 119.77222 * 179.86126 * 3 2 1 5 5 C 1.38912 * 120.54798 * 0.02562 * 4 3 2 6 6 C 1.37657 * 119.68100 * 0.19037 * 5 4 3 7 7 C 1.37934 * 120.11957 * 179.97438 * 2 1 3 8 8 C 1.50638 * 122.56620 * 179.32441 * 6 5 4 9 9 C 1.52721 * 110.58430 * 17.79195 * 8 6 5 10 10 C 1.53324 * 108.39371 * 308.89699 * 9 8 6 11 11 H 1.09007 * 109.67903 * 189.58423 * 10 9 8 12 12 C 1.53000 * 109.70907 * 310.11591 * 10 9 8 13 13 C 1.50630 * 117.75760 * 180.25880 * 5 4 3 14 14 O 1.42902 * 109.22319 * 77.44935 * 13 5 4 15 15 C 1.50705 * 109.25285 * 318.00651 * 13 5 4 16 16 H 1.07995 * 119.99779 * 353.54118 * 15 13 5 17 17 C 1.37878 * 119.99783 * 173.53822 * 15 13 5 18 18 N 1.31503 * 120.00344 * 4.92866 * 17 15 13 19 19 Si 1.86798 * 119.99515 * 184.92394 * 17 15 13 20 20 H 1.48503 * 109.47077 * 60.00564 * 19 17 15 21 21 H 1.48506 * 109.47139 * 180.02562 * 19 17 15 22 22 H 1.48497 * 109.47418 * 300.00417 * 19 17 15 23 23 H 1.08998 * 109.47173 * 90.00381 * 1 2 3 24 24 H 1.09008 * 109.46970 * 210.00147 * 1 2 3 25 25 H 1.08996 * 109.47153 * 329.99960 * 1 2 3 26 26 H 1.08001 * 120.10846 * 359.83506 * 3 2 1 27 27 H 1.08002 * 119.72818 * 180.02562 * 4 3 2 28 28 H 1.07999 * 119.72468 * 359.97438 * 7 2 1 29 29 H 1.08995 * 109.25560 * 138.07848 * 8 6 5 30 30 H 1.09002 * 109.24898 * 257.54585 * 8 6 5 31 31 H 1.09012 * 109.68342 * 189.16771 * 9 8 6 32 32 H 1.09000 * 109.67488 * 68.62249 * 9 8 6 33 33 H 1.09005 * 109.46697 * 179.46648 * 12 10 9 34 34 H 1.09001 * 109.47560 * 299.46550 * 12 10 9 35 35 H 1.08999 * 109.46914 * 59.47140 * 12 10 9 36 36 H 0.96693 * 114.00656 * 301.08780 * 14 13 5 37 37 H 0.97002 * 120.00124 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2007 1.1961 0.0000 4 6 3.5799 1.1879 0.0029 5 6 4.2788 -0.0126 0.0053 6 6 3.5882 -1.2034 0.0008 7 6 2.1991 -1.1931 0.0005 8 6 4.2796 -2.5416 -0.0120 9 6 5.7378 -2.3968 0.4183 10 6 6.3812 -1.2852 -0.4192 11 1 7.4585 -1.2771 -0.2529 12 6 6.0906 -1.5227 -1.9024 13 6 5.7837 0.0518 0.0144 14 8 6.2333 0.3629 1.3347 15 6 6.2407 1.1309 -0.9331 16 1 5.5228 1.6377 -1.5609 17 6 7.5752 1.4712 -0.9984 18 7 8.4622 0.7899 -0.3067 19 14 8.1234 2.9000 -2.0696 20 1 7.4575 4.1459 -1.6117 21 1 9.5963 3.0590 -1.9670 22 1 7.7522 2.6307 -3.4820 23 1 -0.3633 -0.0001 -1.0276 24 1 -0.3633 -0.8900 0.5139 25 1 -0.3633 0.8899 0.5138 26 1 1.6643 2.1335 -0.0027 27 1 4.1210 2.1226 0.0033 28 1 1.6566 -2.1269 0.0014 29 1 3.7680 -3.2171 0.6736 30 1 4.2421 -2.9559 -1.0195 31 1 6.2654 -3.3357 0.2496 32 1 5.7842 -2.1338 1.4751 33 1 6.5416 -0.7254 -2.4932 34 1 6.5104 -2.4818 -2.2060 35 1 5.0128 -1.5301 -2.0648 36 1 5.8940 1.2004 1.6787 37 1 9.4011 1.0291 -0.3529 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260090156.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:31:59 Heat of formation + Delta-G solvation = -41.638851 kcal Electronic energy + Delta-G solvation = -18737.255773 eV Core-core repulsion = 16057.477558 eV Total energy + Delta-G solvation = -2679.778216 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.69057 -36.70382 -34.34148 -32.29800 -31.71130 -30.76569 -28.23955 -26.99522 -25.18199 -24.50644 -22.24189 -20.86557 -20.48096 -17.37733 -16.71406 -15.96469 -14.94675 -14.63406 -14.44052 -14.13345 -13.68395 -13.39704 -13.20337 -12.89757 -12.53854 -12.15593 -11.77310 -11.61304 -11.46942 -11.19378 -11.16904 -10.88370 -10.74319 -10.57269 -10.48627 -10.26483 -10.08786 -9.74720 -9.36894 -8.69415 -8.44830 -8.13254 -8.02696 -7.69671 -5.97812 -4.14101 2.06344 2.08372 3.28034 3.33884 3.36309 4.35085 4.45860 5.23932 5.26111 5.33407 5.55918 5.66630 5.72781 5.79660 5.85888 5.90727 5.96551 6.06195 6.16767 6.29272 6.36612 6.47391 6.55936 6.64357 6.72637 6.76677 6.85435 6.95258 7.12038 7.18010 7.25693 7.31221 7.57321 7.69361 7.80220 7.83424 8.00534 8.26569 8.82075 9.36290 9.60093 11.02436 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.024701 B = 0.009241 C = 0.007637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1133.299275 B = 3029.283960 C = 3665.522060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.108 4.108 3 C -0.138 4.138 4 C -0.100 4.100 5 C -0.069 4.069 6 C -0.072 4.072 7 C -0.134 4.134 8 C -0.076 4.076 9 C -0.118 4.118 10 C -0.064 4.064 11 H 0.100 0.900 12 C -0.126 4.126 13 C 0.292 3.708 14 O -0.552 6.552 15 C -0.554 4.554 16 H 0.057 0.943 17 C 0.084 3.916 18 N -0.853 5.853 19 Si 0.883 3.117 20 H -0.277 1.277 21 H -0.287 1.287 22 H -0.277 1.277 23 H 0.061 0.939 24 H 0.058 0.942 25 H 0.059 0.941 26 H 0.109 0.891 27 H 0.126 0.874 28 H 0.108 0.892 29 H 0.057 0.943 30 H 0.069 0.931 31 H 0.048 0.952 32 H 0.063 0.937 33 H 0.065 0.935 34 H 0.028 0.972 35 H 0.038 0.962 36 H 0.347 0.653 37 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.604 -3.038 0.322 10.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.108 4.108 3 C -0.156 4.156 4 C -0.118 4.118 5 C -0.070 4.070 6 C -0.072 4.072 7 C -0.153 4.153 8 C -0.113 4.113 9 C -0.156 4.156 10 C -0.083 4.083 11 H 0.118 0.882 12 C -0.183 4.183 13 C 0.253 3.747 14 O -0.355 6.355 15 C -0.592 4.592 16 H 0.075 0.925 17 C -0.122 4.122 18 N -0.488 5.488 19 Si 0.710 3.290 20 H -0.202 1.202 21 H -0.213 1.213 22 H -0.203 1.203 23 H 0.080 0.920 24 H 0.077 0.923 25 H 0.078 0.922 26 H 0.127 0.873 27 H 0.144 0.856 28 H 0.126 0.874 29 H 0.075 0.925 30 H 0.087 0.913 31 H 0.066 0.934 32 H 0.082 0.918 33 H 0.084 0.916 34 H 0.047 0.953 35 H 0.057 0.943 36 H 0.191 0.809 37 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -9.085 -3.653 0.295 9.796 hybrid contribution -0.062 1.414 -0.659 1.561 sum -9.147 -2.239 -0.364 9.424 Atomic orbital electron populations 1.20678 0.92233 1.01830 1.01463 1.19625 0.95121 0.93508 1.02593 1.20886 0.94583 0.96710 1.03433 1.21367 0.93180 0.98987 0.98255 1.20982 0.99454 0.91299 0.95232 1.19690 0.92731 0.95193 0.99603 1.20888 0.93788 0.96779 1.03795 1.20468 0.96542 0.93444 1.00873 1.21678 0.93880 0.99019 1.00994 1.20883 1.02542 0.92039 0.92801 0.88176 1.21680 0.99822 0.99446 0.97333 1.17526 0.81916 0.93316 0.81914 1.86534 1.74997 1.41438 1.32496 1.21520 0.93093 1.20499 1.24078 0.92455 1.24938 0.96650 0.95880 0.94764 1.70001 1.01525 1.38069 1.39217 0.86830 0.77552 0.83407 0.81178 1.20237 1.21285 1.20277 0.92017 0.92300 0.92221 0.87272 0.85605 0.87439 0.92490 0.91255 0.93364 0.91831 0.91590 0.95331 0.94261 0.80891 0.93034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.31 10.02 36.00 0.36 -0.95 16 2 C -0.11 -1.78 5.87 -104.72 -0.62 -2.40 16 3 C -0.14 -2.41 9.71 -39.68 -0.39 -2.80 16 4 C -0.10 -2.01 8.61 -39.45 -0.34 -2.35 16 5 C -0.07 -1.50 4.57 -104.62 -0.48 -1.97 16 6 C -0.07 -1.41 5.02 -104.61 -0.53 -1.94 16 7 C -0.13 -2.33 9.27 -39.44 -0.37 -2.69 16 8 C -0.08 -1.37 5.07 -28.06 -0.14 -1.51 16 9 C -0.12 -2.36 5.63 -26.71 -0.15 -2.51 16 10 C -0.06 -1.48 2.26 -90.59 -0.20 -1.68 16 11 H 0.10 2.64 6.57 -51.93 -0.34 2.30 16 12 C -0.13 -2.71 8.06 37.16 0.30 -2.41 16 13 C 0.29 6.99 0.29 -93.10 -0.03 6.97 16 14 O -0.55 -13.83 11.59 -35.23 -0.41 -14.24 16 15 C -0.55 -14.25 5.58 -34.44 -0.19 -14.44 16 16 H 0.06 1.49 6.91 -52.49 -0.36 1.13 16 17 C 0.08 2.20 5.24 -17.82 -0.09 2.11 16 18 N -0.85 -23.46 11.04 55.43 0.61 -22.84 16 19 Si 0.88 20.52 29.54 -169.99 -5.02 15.50 16 20 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 21 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 22 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 23 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 24 H 0.06 0.66 8.09 -51.92 -0.42 0.24 16 25 H 0.06 0.67 8.09 -51.93 -0.42 0.25 16 26 H 0.11 1.63 8.06 -52.49 -0.42 1.21 16 27 H 0.13 2.56 7.10 -52.49 -0.37 2.19 16 28 H 0.11 1.60 8.05 -52.49 -0.42 1.18 16 29 H 0.06 0.90 8.13 -51.93 -0.42 0.48 16 30 H 0.07 1.18 6.81 -51.93 -0.35 0.83 16 31 H 0.05 0.87 8.14 -51.92 -0.42 0.44 16 32 H 0.06 1.35 7.66 -51.93 -0.40 0.95 16 33 H 0.07 1.55 7.00 -51.93 -0.36 1.19 16 34 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.04 0.81 5.57 -51.93 -0.29 0.52 16 36 H 0.35 7.93 8.94 45.56 0.41 8.34 16 37 H 0.26 6.91 8.31 -40.82 -0.34 6.57 16 LS Contribution 288.37 15.07 4.35 4.35 Total: -1.00 -28.01 288.37 -7.91 -35.92 By element: Atomic # 1 Polarization: 14.46 SS G_CDS: -4.58 Total: 9.88 kcal Atomic # 6 Polarization: -25.71 SS G_CDS: -2.86 Total: -28.57 kcal Atomic # 7 Polarization: -23.46 SS G_CDS: 0.61 Total: -22.84 kcal Atomic # 8 Polarization: -13.83 SS G_CDS: -0.41 Total: -14.24 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -5.02 Total: 15.50 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -28.01 -7.91 -35.92 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260090156.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.721 kcal (2) G-P(sol) polarization free energy of solvation -28.005 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.726 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.913 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.918 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.639 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds