Wall clock time and date at job start Mon Mar 30 2020 05:31:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38274 * 120.11294 * 2 1 4 4 C 1.37923 * 119.77222 * 179.86126 * 3 2 1 5 5 C 1.38912 * 120.54798 * 0.02562 * 4 3 2 6 6 C 1.37657 * 119.68100 * 0.19037 * 5 4 3 7 7 C 1.37934 * 120.11957 * 179.97438 * 2 1 3 8 8 C 1.50638 * 122.56620 * 179.32441 * 6 5 4 9 9 C 1.52721 * 110.58430 * 17.79195 * 8 6 5 10 10 C 1.53324 * 108.39371 * 308.89699 * 9 8 6 11 11 H 1.09007 * 109.67903 * 189.58423 * 10 9 8 12 12 C 1.53000 * 109.70907 * 310.11591 * 10 9 8 13 13 C 1.50630 * 117.75760 * 180.25880 * 5 4 3 14 14 O 1.42902 * 109.22319 * 77.44935 * 13 5 4 15 15 C 1.50705 * 109.25285 * 318.00651 * 13 5 4 16 16 H 1.07995 * 119.99779 * 353.54118 * 15 13 5 17 17 C 1.37878 * 119.99783 * 173.53822 * 15 13 5 18 18 N 1.31503 * 120.00344 * 4.92866 * 17 15 13 19 19 Si 1.86798 * 119.99515 * 184.92394 * 17 15 13 20 20 H 1.48503 * 109.47077 * 60.00564 * 19 17 15 21 21 H 1.48506 * 109.47139 * 180.02562 * 19 17 15 22 22 H 1.48497 * 109.47418 * 300.00417 * 19 17 15 23 23 H 1.08998 * 109.47173 * 90.00381 * 1 2 3 24 24 H 1.09008 * 109.46970 * 210.00147 * 1 2 3 25 25 H 1.08996 * 109.47153 * 329.99960 * 1 2 3 26 26 H 1.08001 * 120.10846 * 359.83506 * 3 2 1 27 27 H 1.08002 * 119.72818 * 180.02562 * 4 3 2 28 28 H 1.07999 * 119.72468 * 359.97438 * 7 2 1 29 29 H 1.08995 * 109.25560 * 138.07848 * 8 6 5 30 30 H 1.09002 * 109.24898 * 257.54585 * 8 6 5 31 31 H 1.09012 * 109.68342 * 189.16771 * 9 8 6 32 32 H 1.09000 * 109.67488 * 68.62249 * 9 8 6 33 33 H 1.09005 * 109.46697 * 179.46648 * 12 10 9 34 34 H 1.09001 * 109.47560 * 299.46550 * 12 10 9 35 35 H 1.08999 * 109.46914 * 59.47140 * 12 10 9 36 36 H 0.96693 * 114.00656 * 301.08780 * 14 13 5 37 37 H 0.97002 * 120.00124 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2007 1.1961 0.0000 4 6 3.5799 1.1879 0.0029 5 6 4.2788 -0.0126 0.0053 6 6 3.5882 -1.2034 0.0008 7 6 2.1991 -1.1931 0.0005 8 6 4.2796 -2.5416 -0.0120 9 6 5.7378 -2.3968 0.4183 10 6 6.3812 -1.2852 -0.4192 11 1 7.4585 -1.2771 -0.2529 12 6 6.0906 -1.5227 -1.9024 13 6 5.7837 0.0518 0.0144 14 8 6.2333 0.3629 1.3347 15 6 6.2407 1.1309 -0.9331 16 1 5.5228 1.6377 -1.5609 17 6 7.5752 1.4712 -0.9984 18 7 8.4622 0.7899 -0.3067 19 14 8.1234 2.9000 -2.0696 20 1 7.4575 4.1459 -1.6117 21 1 9.5963 3.0590 -1.9670 22 1 7.7522 2.6307 -3.4820 23 1 -0.3633 -0.0001 -1.0276 24 1 -0.3633 -0.8900 0.5139 25 1 -0.3633 0.8899 0.5138 26 1 1.6643 2.1335 -0.0027 27 1 4.1210 2.1226 0.0033 28 1 1.6566 -2.1269 0.0014 29 1 3.7680 -3.2171 0.6736 30 1 4.2421 -2.9559 -1.0195 31 1 6.2654 -3.3357 0.2496 32 1 5.7842 -2.1338 1.4751 33 1 6.5416 -0.7254 -2.4932 34 1 6.5104 -2.4818 -2.2060 35 1 5.0128 -1.5301 -2.0648 36 1 5.8940 1.2004 1.6787 37 1 9.4011 1.0291 -0.3529 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260090156.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:31:59 Heat of formation + Delta-G solvation = -57.736149 kcal Electronic energy + Delta-G solvation = -18737.953805 eV Core-core repulsion = 16057.477558 eV Total energy + Delta-G solvation = -2680.476247 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.22662 -38.27179 -36.06370 -34.27171 -33.08953 -32.38152 -29.82099 -28.45972 -26.92697 -26.11325 -23.77321 -22.47912 -21.96167 -19.00833 -18.65884 -17.60098 -16.61037 -16.44136 -15.91269 -15.74122 -15.24598 -14.87279 -14.73698 -14.26769 -14.02798 -13.55784 -13.34684 -13.14592 -13.01674 -12.86778 -12.75442 -12.65778 -12.38475 -12.21969 -12.09506 -11.96173 -11.75264 -11.41060 -11.14160 -10.57773 -10.32049 -10.02724 -9.43250 -9.13850 -7.98996 -6.20245 0.64623 0.66626 1.39596 1.41161 1.47433 2.42478 2.99145 3.23901 3.91809 4.03902 4.15914 4.23829 4.31463 4.38677 4.47078 4.60121 4.64616 4.80060 4.86117 4.87544 4.92124 5.04363 5.09074 5.10000 5.12424 5.25224 5.33855 5.43331 5.47333 5.66971 5.71467 5.74098 5.83235 5.85869 5.98729 6.22724 6.32280 6.39218 6.81766 7.40423 7.63759 8.99360 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.024701 B = 0.009241 C = 0.007637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1133.299275 B = 3029.283960 C = 3665.522060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C -0.102 4.102 3 C -0.140 4.140 4 C -0.119 4.119 5 C -0.101 4.101 6 C -0.086 4.086 7 C -0.135 4.135 8 C -0.072 4.072 9 C -0.112 4.112 10 C -0.068 4.068 11 H 0.059 0.941 12 C -0.114 4.114 13 C 0.286 3.714 14 O -0.570 6.570 15 C -0.554 4.554 16 H 0.047 0.953 17 C 0.040 3.960 18 N -0.882 5.882 19 Si 0.937 3.063 20 H -0.273 1.273 21 H -0.287 1.287 22 H -0.275 1.275 23 H 0.076 0.924 24 H 0.076 0.924 25 H 0.072 0.928 26 H 0.133 0.867 27 H 0.108 0.892 28 H 0.140 0.860 29 H 0.086 0.914 30 H 0.083 0.917 31 H 0.067 0.933 32 H 0.043 0.957 33 H 0.036 0.964 34 H 0.051 0.949 35 H 0.048 0.952 36 H 0.350 0.650 37 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.432 -3.970 -0.153 13.052 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.102 4.102 3 C -0.158 4.158 4 C -0.137 4.137 5 C -0.101 4.101 6 C -0.086 4.086 7 C -0.153 4.153 8 C -0.108 4.108 9 C -0.150 4.150 10 C -0.087 4.087 11 H 0.077 0.923 12 C -0.171 4.171 13 C 0.247 3.753 14 O -0.374 6.374 15 C -0.592 4.592 16 H 0.065 0.935 17 C -0.163 4.163 18 N -0.519 5.519 19 Si 0.763 3.237 20 H -0.198 1.198 21 H -0.213 1.213 22 H -0.201 1.201 23 H 0.094 0.906 24 H 0.095 0.905 25 H 0.091 0.909 26 H 0.151 0.849 27 H 0.126 0.874 28 H 0.157 0.843 29 H 0.104 0.896 30 H 0.101 0.899 31 H 0.086 0.914 32 H 0.062 0.938 33 H 0.055 0.945 34 H 0.070 0.930 35 H 0.067 0.933 36 H 0.194 0.806 37 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -11.926 -4.578 -0.186 12.776 hybrid contribution 0.738 1.717 -0.491 1.932 sum -11.188 -2.861 -0.678 11.568 Atomic orbital electron populations 1.20750 0.88873 1.03475 1.02857 1.20138 0.97514 0.92615 0.99943 1.21161 0.93452 0.98608 1.02604 1.21327 0.94643 0.97950 0.99803 1.20771 0.97935 0.92965 0.98430 1.19938 0.94100 0.94954 0.99656 1.21234 0.92842 0.98565 1.02637 1.20480 0.94694 0.93348 1.02294 1.21574 0.95818 0.98468 0.99102 1.20814 1.00252 0.93270 0.94364 0.92250 1.21544 1.00206 0.99523 0.95840 1.17576 0.84083 0.92990 0.80617 1.86501 1.75723 1.41685 1.33447 1.21728 0.92832 1.20795 1.23813 0.93484 1.25556 0.96879 0.97890 0.95938 1.70147 1.01420 1.39409 1.40896 0.85976 0.76995 0.81011 0.79735 1.19829 1.21257 1.20074 0.90565 0.90502 0.90878 0.84904 0.87380 0.84267 0.89607 0.89875 0.91432 0.93826 0.94471 0.93043 0.93318 0.80596 0.93470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.05 10.02 71.24 0.71 -1.34 16 2 C -0.10 -2.98 5.87 -19.93 -0.12 -3.10 16 3 C -0.14 -4.62 9.71 22.20 0.22 -4.41 16 4 C -0.12 -4.81 8.61 22.36 0.19 -4.62 16 5 C -0.10 -4.35 4.57 -19.86 -0.09 -4.44 16 6 C -0.09 -3.21 5.02 -19.86 -0.10 -3.31 16 7 C -0.14 -4.17 9.27 22.36 0.21 -3.97 16 8 C -0.07 -2.37 5.07 29.74 0.15 -2.22 16 9 C -0.11 -4.41 5.63 30.61 0.17 -4.23 16 10 C -0.07 -3.21 2.26 -10.78 -0.02 -3.23 16 11 H 0.06 3.27 6.57 -2.38 -0.02 3.25 16 12 C -0.11 -4.91 8.06 71.98 0.58 -4.33 16 13 C 0.29 14.10 0.29 -12.40 0.00 14.09 16 14 O -0.57 -29.90 11.59 -148.98 -1.73 -31.63 16 15 C -0.55 -29.48 5.58 25.60 0.14 -29.34 16 16 H 0.05 2.54 6.91 -2.91 -0.02 2.52 16 17 C 0.04 2.19 5.24 84.66 0.44 2.63 16 18 N -0.88 -50.52 11.04 21.45 0.24 -50.28 16 19 Si 0.94 43.28 29.54 68.60 2.03 45.31 16 20 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 21 H -0.29 -13.15 7.11 99.48 0.71 -12.44 16 22 H -0.28 -12.53 7.11 99.48 0.71 -11.83 16 23 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 24 H 0.08 1.29 8.09 -2.38 -0.02 1.27 16 25 H 0.07 1.29 8.09 -2.39 -0.02 1.27 16 26 H 0.13 3.64 8.06 -2.91 -0.02 3.61 16 27 H 0.11 4.60 7.10 -2.91 -0.02 4.57 16 28 H 0.14 3.39 8.05 -2.91 -0.02 3.37 16 29 H 0.09 2.36 8.13 -2.39 -0.02 2.34 16 30 H 0.08 2.54 6.81 -2.39 -0.02 2.52 16 31 H 0.07 2.34 8.14 -2.38 -0.02 2.32 16 32 H 0.04 1.86 7.66 -2.39 -0.02 1.84 16 33 H 0.04 1.77 7.00 -2.38 -0.02 1.76 16 34 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 35 H 0.05 1.97 5.57 -2.39 -0.01 1.96 16 36 H 0.35 16.97 8.94 -74.06 -0.66 16.30 16 37 H 0.26 14.18 8.31 -92.71 -0.77 13.41 16 Total: -1.00 -62.18 288.37 3.42 -58.75 By element: Atomic # 1 Polarization: 29.27 SS G_CDS: 0.40 Total: 29.68 kcal Atomic # 6 Polarization: -54.31 SS G_CDS: 2.48 Total: -51.83 kcal Atomic # 7 Polarization: -50.52 SS G_CDS: 0.24 Total: -50.28 kcal Atomic # 8 Polarization: -29.90 SS G_CDS: -1.73 Total: -31.63 kcal Atomic # 14 Polarization: 43.28 SS G_CDS: 2.03 Total: 45.31 kcal Total: -62.18 3.42 -58.75 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260090156.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.016 kcal (2) G-P(sol) polarization free energy of solvation -62.176 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.424 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.752 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds