Wall clock time and date at job start Mon Mar 30 2020 05:32:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38269 * 120.11100 * 2 1 4 4 C 1.37931 * 119.76800 * 180.02562 * 3 2 1 5 5 C 1.38912 * 120.54743 * 359.93100 * 4 3 2 6 6 C 1.37662 * 119.68254 * 359.90499 * 5 4 3 7 7 C 1.37929 * 120.11696 * 179.97438 * 2 1 3 8 8 C 1.50630 * 122.56419 * 180.39475 * 6 5 4 9 9 C 1.52734 * 110.58928 * 342.29808 * 8 6 5 10 10 C 1.53325 * 108.38187 * 51.08690 * 9 8 6 11 11 H 1.09003 * 109.67800 * 170.39454 * 10 9 8 12 12 C 1.52998 * 109.68165 * 49.84689 * 10 9 8 13 13 C 1.50629 * 117.74833 * 179.69717 * 5 4 3 14 14 O 1.42904 * 109.24815 * 282.79181 * 13 5 4 15 15 C 1.50691 * 109.25577 * 42.22530 * 13 5 4 16 16 H 1.08002 * 120.00347 * 5.39872 * 15 13 5 17 17 C 1.37886 * 120.00034 * 185.40763 * 15 13 5 18 18 N 1.31510 * 120.00027 * 8.72069 * 17 15 13 19 19 Si 1.86799 * 119.99911 * 188.72583 * 17 15 13 20 20 H 1.48497 * 109.47338 * 89.99549 * 19 17 15 21 21 H 1.48498 * 109.46889 * 209.99853 * 19 17 15 22 22 H 1.48501 * 109.46971 * 329.99471 * 19 17 15 23 23 H 1.08999 * 109.46978 * 90.00394 * 1 2 3 24 24 H 1.09001 * 109.46690 * 210.00106 * 1 2 3 25 25 H 1.08994 * 109.47149 * 330.00011 * 1 2 3 26 26 H 1.07995 * 120.11626 * 0.34917 * 3 2 1 27 27 H 1.08000 * 119.72345 * 179.90560 * 4 3 2 28 28 H 1.07999 * 119.72337 * 0.08409 * 7 2 1 29 29 H 1.09003 * 109.25552 * 222.00741 * 8 6 5 30 30 H 1.09002 * 109.22228 * 102.56225 * 8 6 5 31 31 H 1.09000 * 109.67823 * 291.36527 * 9 8 6 32 32 H 1.08998 * 109.71476 * 170.83075 * 9 8 6 33 33 H 1.09006 * 109.46671 * 301.07112 * 12 10 9 34 34 H 1.08997 * 109.47500 * 61.06699 * 12 10 9 35 35 H 1.09003 * 109.47083 * 181.07514 * 12 10 9 36 36 H 0.96702 * 113.99601 * 60.01314 * 14 13 5 37 37 H 0.96994 * 120.00366 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2007 1.1961 0.0000 4 6 3.5800 1.1878 -0.0005 5 6 4.2788 -0.0127 0.0004 6 6 3.5882 -1.2035 0.0038 7 6 2.1991 -1.1931 0.0005 8 6 4.2796 -2.5417 0.0137 9 6 5.7380 -2.3960 -0.4158 10 6 6.3808 -1.2860 0.4242 11 1 7.4582 -1.2777 0.2587 12 6 6.0884 -1.5267 1.9066 13 6 5.7837 0.0519 -0.0073 14 8 6.2351 0.3657 -1.3264 15 6 6.2398 1.1291 0.9426 16 1 5.5192 1.6466 1.5584 17 6 7.5772 1.4543 1.0253 18 7 8.4309 0.9517 0.1604 19 14 8.1765 2.6086 2.3661 20 1 8.5488 1.8202 3.5682 21 1 9.3618 3.3593 1.8797 22 1 7.0950 3.5642 2.7164 23 1 -0.3633 -0.0001 -1.0277 24 1 -0.3633 -0.8900 0.5139 25 1 -0.3633 0.8899 0.5138 26 1 1.6645 2.1335 0.0057 27 1 4.1211 2.1225 -0.0021 28 1 1.6565 -2.1269 -0.0004 29 1 3.7681 -3.2157 -0.6735 30 1 4.2412 -2.9580 1.0204 31 1 5.7849 -2.1309 -1.4720 32 1 6.2660 -3.3349 -0.2492 33 1 5.0102 -1.5439 2.0660 34 1 6.5159 -2.4821 2.2108 35 1 6.5306 -0.7256 2.4989 36 1 5.9096 1.2120 -1.6625 37 1 9.3718 1.1801 0.2188 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260090162.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:32:02 Heat of formation + Delta-G solvation = -41.088171 kcal Electronic energy + Delta-G solvation = -18737.391170 eV Core-core repulsion = 16057.636833 eV Total energy + Delta-G solvation = -2679.754336 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -39.69699 -36.70842 -34.33148 -32.26470 -31.70547 -30.79780 -28.25908 -27.00372 -25.17907 -24.53342 -22.24408 -20.86357 -20.50433 -17.41318 -16.69679 -15.94389 -14.95827 -14.62690 -14.43900 -14.17578 -13.66473 -13.42727 -13.20824 -12.87027 -12.54181 -12.18546 -11.78973 -11.61710 -11.48058 -11.23458 -11.13759 -10.89101 -10.73315 -10.58272 -10.49235 -10.25139 -10.08724 -9.78755 -9.42532 -8.64638 -8.53843 -8.07120 -8.02662 -7.69085 -5.97448 -4.13613 2.06316 2.08598 3.26859 3.35013 3.37368 4.35594 4.45785 5.23419 5.25349 5.33483 5.55432 5.66209 5.71240 5.79295 5.83230 5.90256 5.95434 6.05870 6.15960 6.27759 6.35115 6.43691 6.53605 6.60817 6.70630 6.75880 6.84611 6.91082 7.09176 7.17652 7.23699 7.30307 7.51927 7.65673 7.80190 7.80878 7.94560 8.24995 8.82641 9.40248 9.60507 11.02352 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.024968 B = 0.009129 C = 0.007715 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1121.164639 B = 3066.393032 C = 3628.510156 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.109 4.109 3 C -0.138 4.138 4 C -0.099 4.099 5 C -0.068 4.068 6 C -0.073 4.073 7 C -0.134 4.134 8 C -0.076 4.076 9 C -0.117 4.117 10 C -0.062 4.062 11 H 0.090 0.910 12 C -0.129 4.129 13 C 0.292 3.708 14 O -0.548 6.548 15 C -0.555 4.555 16 H 0.058 0.942 17 C 0.083 3.917 18 N -0.848 5.848 19 Si 0.878 3.122 20 H -0.279 1.279 21 H -0.287 1.287 22 H -0.274 1.274 23 H 0.061 0.939 24 H 0.058 0.942 25 H 0.059 0.941 26 H 0.109 0.891 27 H 0.126 0.874 28 H 0.107 0.893 29 H 0.057 0.943 30 H 0.069 0.931 31 H 0.064 0.936 32 H 0.048 0.952 33 H 0.041 0.959 34 H 0.029 0.971 35 H 0.065 0.935 36 H 0.348 0.652 37 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.617 -3.430 -0.055 10.211 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.109 4.109 3 C -0.156 4.156 4 C -0.117 4.117 5 C -0.069 4.069 6 C -0.073 4.073 7 C -0.152 4.152 8 C -0.113 4.113 9 C -0.155 4.155 10 C -0.081 4.081 11 H 0.108 0.892 12 C -0.186 4.186 13 C 0.253 3.747 14 O -0.351 6.351 15 C -0.593 4.593 16 H 0.076 0.924 17 C -0.123 4.123 18 N -0.483 5.483 19 Si 0.706 3.294 20 H -0.205 1.205 21 H -0.213 1.213 22 H -0.199 1.199 23 H 0.080 0.920 24 H 0.077 0.923 25 H 0.078 0.922 26 H 0.127 0.873 27 H 0.144 0.856 28 H 0.126 0.874 29 H 0.076 0.924 30 H 0.088 0.912 31 H 0.083 0.917 32 H 0.067 0.933 33 H 0.060 0.940 34 H 0.048 0.952 35 H 0.084 0.916 36 H 0.192 0.808 37 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -9.116 -4.035 -0.048 9.970 hybrid contribution 0.016 1.254 0.820 1.498 sum -9.100 -2.781 0.772 9.547 Atomic orbital electron populations 1.20678 0.92234 1.01853 1.01435 1.19623 0.95121 0.93507 1.02614 1.20888 0.94587 0.96712 1.03395 1.21367 0.93172 0.98991 0.98193 1.20980 0.99446 0.91294 0.95163 1.19683 0.92744 0.95161 0.99744 1.20881 0.93778 0.96778 1.03795 1.20465 0.96438 0.93505 1.00884 1.21656 0.93944 0.98857 1.01014 1.20818 1.01794 0.92531 0.92975 0.89186 1.21719 1.00112 0.99537 0.97203 1.17525 0.81944 0.93072 0.82200 1.86523 1.75829 1.40260 1.32440 1.21547 0.92831 1.20782 1.24152 0.92385 1.24969 0.96921 0.95532 0.94875 1.70133 1.02716 1.42649 1.32755 0.86834 0.78517 0.81264 0.82813 1.20536 1.21288 1.19906 0.92027 0.92304 0.92215 0.87268 0.85591 0.87445 0.92427 0.91246 0.91710 0.93326 0.93967 0.95219 0.91593 0.80812 0.93197 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.31 10.02 36.01 0.36 -0.95 16 2 C -0.11 -1.78 5.87 -104.72 -0.61 -2.40 16 3 C -0.14 -2.41 9.71 -39.68 -0.39 -2.79 16 4 C -0.10 -2.00 8.62 -39.44 -0.34 -2.34 16 5 C -0.07 -1.47 4.58 -104.62 -0.48 -1.95 16 6 C -0.07 -1.43 5.02 -104.62 -0.52 -1.95 16 7 C -0.13 -2.32 9.27 -39.45 -0.37 -2.68 16 8 C -0.08 -1.35 5.07 -28.05 -0.14 -1.49 16 9 C -0.12 -2.32 5.63 -26.70 -0.15 -2.47 16 10 C -0.06 -1.43 2.27 -90.59 -0.21 -1.64 16 11 H 0.09 2.35 7.00 -51.93 -0.36 1.99 16 12 C -0.13 -2.73 8.08 37.16 0.30 -2.43 16 13 C 0.29 6.97 0.29 -93.10 -0.03 6.94 16 14 O -0.55 -13.80 11.31 -35.23 -0.40 -14.20 16 15 C -0.56 -14.28 5.60 -34.44 -0.19 -14.47 16 16 H 0.06 1.52 6.89 -52.49 -0.36 1.15 16 17 C 0.08 2.20 5.17 -17.82 -0.09 2.11 16 18 N -0.85 -23.40 11.27 55.43 0.62 -22.78 16 19 Si 0.88 20.52 29.55 -169.99 -5.02 15.50 16 20 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 21 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 22 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 23 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 24 H 0.06 0.66 8.09 -51.93 -0.42 0.24 16 25 H 0.06 0.67 8.09 -51.93 -0.42 0.25 16 26 H 0.11 1.64 8.06 -52.49 -0.42 1.22 16 27 H 0.13 2.58 7.10 -52.49 -0.37 2.21 16 28 H 0.11 1.59 8.05 -52.49 -0.42 1.17 16 29 H 0.06 0.90 8.13 -51.93 -0.42 0.48 16 30 H 0.07 1.17 6.80 -51.93 -0.35 0.81 16 31 H 0.06 1.37 7.66 -51.93 -0.40 0.97 16 32 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.04 0.86 5.54 -51.93 -0.29 0.57 16 34 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.07 1.52 6.96 -51.93 -0.36 1.16 16 36 H 0.35 8.09 8.94 45.56 0.41 8.50 16 37 H 0.26 6.87 8.31 -40.82 -0.34 6.53 16 LS Contribution 288.67 15.07 4.35 4.35 Total: -1.00 -28.06 288.67 -7.91 -35.97 By element: Atomic # 1 Polarization: 14.28 SS G_CDS: -4.60 Total: 9.68 kcal Atomic # 6 Polarization: -25.66 SS G_CDS: -2.86 Total: -28.52 kcal Atomic # 7 Polarization: -23.40 SS G_CDS: 0.62 Total: -22.78 kcal Atomic # 8 Polarization: -13.80 SS G_CDS: -0.40 Total: -14.20 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -5.02 Total: 15.50 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -28.06 -7.91 -35.97 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260090162.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.118 kcal (2) G-P(sol) polarization free energy of solvation -28.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.182 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.906 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.970 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds