Wall clock time and date at job start Mon Mar 30 2020 05:32:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38269 * 120.11100 * 2 1 4 4 C 1.37931 * 119.76800 * 180.02562 * 3 2 1 5 5 C 1.38912 * 120.54743 * 359.93100 * 4 3 2 6 6 C 1.37662 * 119.68254 * 359.90499 * 5 4 3 7 7 C 1.37929 * 120.11696 * 179.97438 * 2 1 3 8 8 C 1.50630 * 122.56419 * 180.39475 * 6 5 4 9 9 C 1.52734 * 110.58928 * 342.29808 * 8 6 5 10 10 C 1.53325 * 108.38187 * 51.08690 * 9 8 6 11 11 H 1.09003 * 109.67800 * 170.39454 * 10 9 8 12 12 C 1.52998 * 109.68165 * 49.84689 * 10 9 8 13 13 C 1.50629 * 117.74833 * 179.69717 * 5 4 3 14 14 O 1.42904 * 109.24815 * 282.79181 * 13 5 4 15 15 C 1.50691 * 109.25577 * 42.22530 * 13 5 4 16 16 H 1.08002 * 120.00347 * 5.39872 * 15 13 5 17 17 C 1.37886 * 120.00034 * 185.40763 * 15 13 5 18 18 N 1.31510 * 120.00027 * 8.72069 * 17 15 13 19 19 Si 1.86799 * 119.99911 * 188.72583 * 17 15 13 20 20 H 1.48497 * 109.47338 * 89.99549 * 19 17 15 21 21 H 1.48498 * 109.46889 * 209.99853 * 19 17 15 22 22 H 1.48501 * 109.46971 * 329.99471 * 19 17 15 23 23 H 1.08999 * 109.46978 * 90.00394 * 1 2 3 24 24 H 1.09001 * 109.46690 * 210.00106 * 1 2 3 25 25 H 1.08994 * 109.47149 * 330.00011 * 1 2 3 26 26 H 1.07995 * 120.11626 * 0.34917 * 3 2 1 27 27 H 1.08000 * 119.72345 * 179.90560 * 4 3 2 28 28 H 1.07999 * 119.72337 * 0.08409 * 7 2 1 29 29 H 1.09003 * 109.25552 * 222.00741 * 8 6 5 30 30 H 1.09002 * 109.22228 * 102.56225 * 8 6 5 31 31 H 1.09000 * 109.67823 * 291.36527 * 9 8 6 32 32 H 1.08998 * 109.71476 * 170.83075 * 9 8 6 33 33 H 1.09006 * 109.46671 * 301.07112 * 12 10 9 34 34 H 1.08997 * 109.47500 * 61.06699 * 12 10 9 35 35 H 1.09003 * 109.47083 * 181.07514 * 12 10 9 36 36 H 0.96702 * 113.99601 * 60.01314 * 14 13 5 37 37 H 0.96994 * 120.00366 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2007 1.1961 0.0000 4 6 3.5800 1.1878 -0.0005 5 6 4.2788 -0.0127 0.0004 6 6 3.5882 -1.2035 0.0038 7 6 2.1991 -1.1931 0.0005 8 6 4.2796 -2.5417 0.0137 9 6 5.7380 -2.3960 -0.4158 10 6 6.3808 -1.2860 0.4242 11 1 7.4582 -1.2777 0.2587 12 6 6.0884 -1.5267 1.9066 13 6 5.7837 0.0519 -0.0073 14 8 6.2351 0.3657 -1.3264 15 6 6.2398 1.1291 0.9426 16 1 5.5192 1.6466 1.5584 17 6 7.5772 1.4543 1.0253 18 7 8.4309 0.9517 0.1604 19 14 8.1765 2.6086 2.3661 20 1 8.5488 1.8202 3.5682 21 1 9.3618 3.3593 1.8797 22 1 7.0950 3.5642 2.7164 23 1 -0.3633 -0.0001 -1.0277 24 1 -0.3633 -0.8900 0.5139 25 1 -0.3633 0.8899 0.5138 26 1 1.6645 2.1335 0.0057 27 1 4.1211 2.1225 -0.0021 28 1 1.6565 -2.1269 -0.0004 29 1 3.7681 -3.2157 -0.6735 30 1 4.2412 -2.9580 1.0204 31 1 5.7849 -2.1309 -1.4720 32 1 6.2660 -3.3349 -0.2492 33 1 5.0102 -1.5439 2.0660 34 1 6.5159 -2.4821 2.2108 35 1 6.5306 -0.7256 2.4989 36 1 5.9096 1.2120 -1.6625 37 1 9.3718 1.1801 0.2188 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260090162.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:32:01 Heat of formation + Delta-G solvation = -57.230381 kcal Electronic energy + Delta-G solvation = -18738.091149 eV Core-core repulsion = 16057.636833 eV Total energy + Delta-G solvation = -2680.454315 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.23030 -38.27184 -36.05473 -34.24394 -33.08604 -32.41004 -29.83571 -28.45822 -26.92569 -26.12825 -23.77367 -22.47867 -21.98090 -19.03572 -18.64383 -17.57744 -16.61292 -16.44840 -15.91359 -15.78121 -15.23992 -14.86499 -14.75119 -14.23106 -14.04245 -13.60103 -13.35647 -13.14238 -13.00689 -12.87157 -12.76024 -12.65370 -12.37948 -12.23102 -12.08081 -11.96154 -11.75366 -11.43431 -11.19195 -10.55676 -10.36681 -9.98635 -9.43129 -9.13437 -7.99840 -6.20385 0.64648 0.66828 1.37317 1.40719 1.47839 2.42040 2.98711 3.23017 3.90996 4.02667 4.15445 4.23425 4.30691 4.36956 4.46353 4.60141 4.63920 4.77527 4.84935 4.86817 4.92311 5.04098 5.08251 5.08835 5.12342 5.23083 5.33223 5.41962 5.46441 5.65126 5.70645 5.73191 5.83103 5.83928 5.93783 6.18800 6.30786 6.39444 6.81605 7.41705 7.64216 8.98841 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.024968 B = 0.009129 C = 0.007715 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1121.164639 B = 3066.393032 C = 3628.510156 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C -0.102 4.102 3 C -0.140 4.140 4 C -0.119 4.119 5 C -0.100 4.100 6 C -0.087 4.087 7 C -0.135 4.135 8 C -0.071 4.071 9 C -0.111 4.111 10 C -0.066 4.066 11 H 0.048 0.952 12 C -0.118 4.118 13 C 0.285 3.715 14 O -0.566 6.566 15 C -0.554 4.554 16 H 0.047 0.953 17 C 0.041 3.959 18 N -0.879 5.879 19 Si 0.932 3.068 20 H -0.277 1.277 21 H -0.287 1.287 22 H -0.271 1.271 23 H 0.077 0.923 24 H 0.076 0.924 25 H 0.071 0.929 26 H 0.132 0.868 27 H 0.107 0.893 28 H 0.140 0.860 29 H 0.086 0.914 30 H 0.084 0.916 31 H 0.043 0.957 32 H 0.069 0.931 33 H 0.051 0.949 34 H 0.053 0.947 35 H 0.038 0.962 36 H 0.349 0.651 37 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.424 -4.591 0.587 13.258 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.102 4.102 3 C -0.158 4.158 4 C -0.137 4.137 5 C -0.100 4.100 6 C -0.087 4.087 7 C -0.152 4.152 8 C -0.108 4.108 9 C -0.149 4.149 10 C -0.085 4.085 11 H 0.067 0.933 12 C -0.175 4.175 13 C 0.246 3.754 14 O -0.369 6.369 15 C -0.592 4.592 16 H 0.065 0.935 17 C -0.162 4.162 18 N -0.515 5.515 19 Si 0.758 3.242 20 H -0.203 1.203 21 H -0.213 1.213 22 H -0.196 1.196 23 H 0.095 0.905 24 H 0.095 0.905 25 H 0.090 0.910 26 H 0.150 0.850 27 H 0.125 0.875 28 H 0.158 0.842 29 H 0.105 0.895 30 H 0.103 0.897 31 H 0.062 0.938 32 H 0.087 0.913 33 H 0.070 0.930 34 H 0.072 0.928 35 H 0.057 0.943 36 H 0.193 0.807 37 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -11.935 -5.190 0.604 13.029 hybrid contribution 0.806 1.634 0.593 1.916 sum -11.128 -3.557 1.196 11.744 Atomic orbital electron populations 1.20750 0.88871 1.03435 1.02895 1.20135 0.97516 0.92611 0.99957 1.21156 0.93439 0.98616 1.02621 1.21317 0.94644 0.97934 0.99818 1.20767 0.97921 0.92956 0.98384 1.19936 0.94102 0.94937 0.99698 1.21232 0.92843 0.98558 1.02600 1.20484 0.94579 0.93337 1.02391 1.21557 0.95886 0.98354 0.99066 1.20766 0.99432 0.93644 0.94677 0.93320 1.21596 1.00591 0.99732 0.95583 1.17597 0.84125 0.92827 0.80806 1.86493 1.76560 1.40368 1.33487 1.21750 0.92580 1.20992 1.23872 0.93482 1.25566 0.97205 0.96976 0.96488 1.70260 1.02657 1.44256 1.34350 0.85986 0.77909 0.79661 0.80629 1.20267 1.21258 1.19601 0.90458 0.90511 0.90978 0.84964 0.87523 0.84210 0.89535 0.89733 0.93793 0.91271 0.92978 0.92802 0.94313 0.80715 0.93562 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.05 10.02 71.24 0.71 -1.34 16 2 C -0.10 -2.98 5.87 -19.93 -0.12 -3.10 16 3 C -0.14 -4.65 9.71 22.20 0.22 -4.43 16 4 C -0.12 -4.84 8.62 22.36 0.19 -4.64 16 5 C -0.10 -4.32 4.58 -19.86 -0.09 -4.41 16 6 C -0.09 -3.20 5.02 -19.86 -0.10 -3.30 16 7 C -0.13 -4.14 9.27 22.36 0.21 -3.93 16 8 C -0.07 -2.33 5.07 29.74 0.15 -2.18 16 9 C -0.11 -4.32 5.63 30.61 0.17 -4.14 16 10 C -0.07 -3.09 2.27 -10.78 -0.02 -3.12 16 11 H 0.05 2.65 7.00 -2.39 -0.02 2.63 16 12 C -0.12 -4.98 8.08 71.98 0.58 -4.40 16 13 C 0.29 14.05 0.29 -12.40 0.00 14.05 16 14 O -0.57 -29.93 11.31 -148.98 -1.69 -31.61 16 15 C -0.55 -29.54 5.60 25.60 0.14 -29.40 16 16 H 0.05 2.55 6.89 -2.91 -0.02 2.53 16 17 C 0.04 2.22 5.17 84.66 0.44 2.66 16 18 N -0.88 -50.56 11.27 21.45 0.24 -50.32 16 19 Si 0.93 43.31 29.55 68.60 2.03 45.34 16 20 H -0.28 -12.66 7.11 99.48 0.71 -11.96 16 21 H -0.29 -13.22 7.11 99.48 0.71 -12.51 16 22 H -0.27 -12.35 7.11 99.48 0.71 -11.64 16 23 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 24 H 0.08 1.29 8.09 -2.39 -0.02 1.27 16 25 H 0.07 1.29 8.09 -2.39 -0.02 1.27 16 26 H 0.13 3.65 8.06 -2.91 -0.02 3.63 16 27 H 0.11 4.59 7.10 -2.91 -0.02 4.57 16 28 H 0.14 3.37 8.05 -2.91 -0.02 3.35 16 29 H 0.09 2.35 8.13 -2.39 -0.02 2.33 16 30 H 0.08 2.52 6.80 -2.39 -0.02 2.51 16 31 H 0.04 1.86 7.66 -2.39 -0.02 1.84 16 32 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 33 H 0.05 2.06 5.54 -2.38 -0.01 2.05 16 34 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 35 H 0.04 1.81 6.96 -2.39 -0.02 1.79 16 36 H 0.35 17.32 8.94 -74.06 -0.66 16.65 16 37 H 0.26 14.16 8.31 -92.71 -0.77 13.39 16 Total: -1.00 -62.44 288.67 3.47 -58.98 By element: Atomic # 1 Polarization: 28.90 SS G_CDS: 0.40 Total: 29.30 kcal Atomic # 6 Polarization: -54.16 SS G_CDS: 2.48 Total: -51.68 kcal Atomic # 7 Polarization: -50.56 SS G_CDS: 0.24 Total: -50.32 kcal Atomic # 8 Polarization: -29.93 SS G_CDS: -1.69 Total: -31.61 kcal Atomic # 14 Polarization: 43.31 SS G_CDS: 2.03 Total: 45.34 kcal Total: -62.44 3.47 -58.98 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260090162.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.749 kcal (2) G-P(sol) polarization free energy of solvation -62.445 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.696 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.979 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds