Wall clock time and date at job start Mon Mar 30 2020 05:50:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35902 * 117.00217 * 2 1 4 4 C 1.38759 * 120.05343 * 359.97438 * 3 2 1 5 5 C 1.38115 * 119.94479 * 180.02562 * 4 3 2 6 6 C 1.50705 * 119.97402 * 179.97438 * 5 4 3 7 7 C 1.38293 * 120.05765 * 359.97438 * 5 4 3 8 8 C 1.50697 * 119.94478 * 180.02562 * 7 5 4 9 9 C 1.50699 * 115.55220 * 294.11019 * 8 7 5 10 10 H 1.08008 * 120.00019 * 144.72491 * 9 8 7 11 11 C 1.37876 * 120.00076 * 324.72496 * 9 8 7 12 12 N 1.31513 * 120.00070 * 351.58338 * 11 9 8 13 13 Si 1.86795 * 120.00103 * 171.58873 * 11 9 8 14 14 H 1.48506 * 109.47490 * 59.99571 * 13 11 9 15 15 H 1.48497 * 109.47322 * 179.97438 * 13 11 9 16 16 H 1.48497 * 109.47085 * 299.99662 * 13 11 9 17 17 C 1.53002 * 117.49800 * 148.43940 * 8 7 5 18 18 C 1.53000 * 117.49685 * 79.78242 * 8 7 5 19 19 C 1.38244 * 120.10655 * 359.79079 * 7 5 4 20 20 C 1.38164 * 120.05796 * 0.45691 * 19 7 5 21 21 C 1.50698 * 120.02744 * 179.79022 * 20 19 7 22 22 H 1.09000 * 109.46795 * 179.97438 * 1 2 3 23 23 H 1.08997 * 109.47108 * 299.99958 * 1 2 3 24 24 H 1.09000 * 109.47057 * 60.00263 * 1 2 3 25 25 H 1.08004 * 120.02648 * 0.02562 * 4 3 2 26 26 H 1.09004 * 109.46685 * 86.27395 * 6 5 4 27 27 H 1.08993 * 109.47203 * 206.27076 * 6 5 4 28 28 H 1.09000 * 109.47118 * 326.27782 * 6 5 4 29 29 H 0.96998 * 120.00134 * 185.01524 * 12 11 9 30 30 H 1.09004 * 117.49676 * 359.97438 * 17 8 7 31 31 H 1.08993 * 117.49874 * 145.02231 * 17 8 7 32 32 H 1.09002 * 117.50053 * 214.98096 * 18 8 7 33 33 H 1.09001 * 117.50005 * 359.97111 * 18 8 7 34 34 H 1.08006 * 119.96774 * 180.22936 * 19 7 5 35 35 H 1.08999 * 109.47812 * 269.73054 * 21 20 19 36 36 H 1.09003 * 109.47354 * 29.73179 * 21 20 19 37 37 H 1.09001 * 109.46828 * 149.72572 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2914 2.3753 -0.0005 5 6 1.9208 3.6047 -0.0011 6 6 1.1019 4.8699 -0.0022 7 6 3.3019 3.6758 -0.0005 8 6 3.9860 5.0186 -0.0005 9 6 3.7867 5.8496 -1.2418 10 1 3.7084 6.9241 -1.1654 11 6 3.7043 5.2383 -2.4749 12 7 3.9635 3.9542 -2.5908 13 14 3.2248 6.2340 -3.9808 14 1 4.2101 7.3258 -4.1868 15 1 3.2093 5.3503 -5.1741 16 1 1.8744 6.8176 -3.7789 17 6 5.3368 5.1232 0.7103 18 6 4.0916 5.7576 1.3350 19 6 4.0559 2.5171 0.0049 20 6 3.4311 1.2849 0.0003 21 6 4.2537 0.0222 0.0014 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 0.2127 2.3204 -0.0005 26 1 0.8480 5.1392 1.0230 27 1 1.6782 5.6753 -0.4573 28 1 0.1871 4.7100 -0.5730 29 1 3.9768 3.5393 -3.4675 30 1 5.7304 4.2209 1.1783 31 1 6.0811 5.7934 0.2804 32 1 4.0173 6.8449 1.3159 33 1 3.6659 5.2727 2.2135 34 1 5.1344 2.5753 0.0091 35 1 4.4522 -0.2832 -1.0259 36 1 5.1977 0.2040 0.5152 37 1 3.7063 -0.7675 0.5160 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260091866.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:50:11 Heat of formation + Delta-G solvation = -11.697215 kcal Electronic energy + Delta-G solvation = -18406.297967 eV Core-core repulsion = 15727.818118 eV Total energy + Delta-G solvation = -2678.479849 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.07326 -39.20877 -36.91223 -34.39156 -34.03279 -30.46122 -29.88891 -28.29287 -27.50511 -25.45367 -23.53354 -22.90040 -21.83190 -20.55759 -18.30751 -18.11204 -16.97670 -16.58924 -16.47582 -15.95977 -15.27637 -14.99923 -14.64079 -14.34126 -14.01058 -13.89380 -13.50713 -13.32331 -13.08766 -12.81810 -12.71522 -12.59342 -12.51997 -12.28916 -12.20909 -12.01481 -11.53912 -11.48183 -11.20633 -10.90544 -10.53799 -10.08963 -9.25281 -8.55482 -7.87130 -6.07736 0.75649 0.94959 1.42518 1.45117 1.50325 2.44688 2.59812 3.09061 3.14885 3.73180 4.12325 4.14787 4.23195 4.42961 4.44318 4.55561 4.58656 4.66360 4.73182 4.77158 4.81122 4.90030 4.97567 5.00723 5.02561 5.05719 5.12823 5.21601 5.30503 5.46037 5.58461 5.70516 5.74122 5.81080 5.97307 6.24728 6.30452 6.49032 6.75380 6.90676 7.49983 8.99995 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.020648 B = 0.009069 C = 0.008276 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1355.726758 B = 3086.615779 C = 3382.646804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.333 6.333 3 C 0.091 3.909 4 C -0.215 4.215 5 C -0.065 4.065 6 C -0.113 4.113 7 C -0.006 4.006 8 C 0.064 3.936 9 C -0.503 4.503 10 H 0.055 0.945 11 C 0.039 3.961 12 N -0.879 5.879 13 Si 0.936 3.064 14 H -0.274 1.274 15 H -0.291 1.291 16 H -0.270 1.270 17 C -0.207 4.207 18 C -0.184 4.184 19 C -0.065 4.065 20 C -0.145 4.145 21 C -0.088 4.088 22 H 0.122 0.878 23 H 0.059 0.941 24 H 0.049 0.951 25 H 0.134 0.866 26 H 0.069 0.931 27 H 0.079 0.921 28 H 0.055 0.945 29 H 0.256 0.744 30 H 0.075 0.925 31 H 0.071 0.929 32 H 0.083 0.917 33 H 0.081 0.919 34 H 0.104 0.896 35 H 0.057 0.943 36 H 0.067 0.933 37 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.564 -5.390 5.268 9.368 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.248 6.248 3 C 0.046 3.954 4 C -0.233 4.233 5 C -0.066 4.066 6 C -0.169 4.169 7 C -0.007 4.007 8 C 0.064 3.936 9 C -0.540 4.540 10 H 0.073 0.927 11 C -0.164 4.164 12 N -0.514 5.514 13 Si 0.762 3.238 14 H -0.200 1.200 15 H -0.217 1.217 16 H -0.195 1.195 17 C -0.245 4.245 18 C -0.222 4.222 19 C -0.083 4.083 20 C -0.145 4.145 21 C -0.144 4.144 22 H 0.140 0.860 23 H 0.077 0.923 24 H 0.067 0.933 25 H 0.152 0.848 26 H 0.088 0.912 27 H 0.098 0.902 28 H 0.074 0.926 29 H 0.065 0.935 30 H 0.093 0.907 31 H 0.090 0.910 32 H 0.101 0.899 33 H 0.099 0.901 34 H 0.122 0.878 35 H 0.076 0.924 36 H 0.086 0.914 37 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -5.541 -5.756 5.130 9.495 hybrid contribution -0.130 0.744 -1.165 1.388 sum -5.671 -5.012 3.965 8.544 Atomic orbital electron populations 1.23195 0.77533 1.04977 1.01407 1.85944 1.22519 1.26683 1.89634 1.18662 0.91761 0.84201 1.00734 1.21058 0.99679 0.91721 1.10886 1.19584 0.93718 0.94821 0.98445 1.20852 0.98467 0.96107 1.01522 1.18888 0.92310 0.93641 0.95848 1.17747 0.93929 0.91419 0.90527 1.20545 1.50864 0.92209 0.90392 0.92650 1.25500 0.94651 0.95461 1.00777 1.70126 1.46946 1.10901 1.23432 0.85961 0.79252 0.78843 0.79728 1.19981 1.21697 1.19493 1.23028 0.92756 1.01692 1.07038 1.22905 1.03004 0.98802 0.97444 1.20468 0.98587 0.91067 0.98173 1.19334 0.91196 0.96262 1.07729 1.20456 0.98547 0.93819 1.01606 0.86024 0.92277 0.93277 0.84841 0.91203 0.90232 0.92564 0.93491 0.90692 0.90989 0.89867 0.90059 0.87792 0.92412 0.91382 0.91158 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.57 9.81 113.37 1.11 1.68 16 2 O -0.33 -11.36 9.54 -92.44 -0.88 -12.24 16 3 C 0.09 3.62 6.66 22.51 0.15 3.77 16 4 C -0.21 -8.54 8.71 22.37 0.19 -8.35 16 5 C -0.07 -2.88 5.86 -19.88 -0.12 -2.99 16 6 C -0.11 -4.49 9.63 71.24 0.69 -3.80 16 7 C -0.01 -0.29 3.29 -19.85 -0.07 -0.36 16 8 C 0.06 3.07 1.18 -53.67 -0.06 3.01 16 9 C -0.50 -26.23 6.89 25.60 0.18 -26.06 16 10 H 0.06 2.87 7.83 -2.91 -0.02 2.85 16 11 C 0.04 2.07 5.28 84.65 0.45 2.52 16 12 N -0.88 -48.55 11.16 21.45 0.24 -48.31 16 13 Si 0.94 42.39 29.55 68.60 2.03 44.41 16 14 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 15 H -0.29 -13.26 7.11 99.48 0.71 -12.56 16 16 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 17 C -0.21 -9.18 9.43 30.62 0.29 -8.89 16 18 C -0.18 -7.66 9.94 30.62 0.30 -7.36 16 19 C -0.06 -2.96 8.18 22.25 0.18 -2.78 16 20 C -0.14 -6.01 5.89 -19.77 -0.12 -6.13 16 21 C -0.09 -2.98 9.79 71.24 0.70 -2.28 16 22 H 0.12 2.10 8.14 -2.39 -0.02 2.08 16 23 H 0.06 1.30 7.66 -2.39 -0.02 1.28 16 24 H 0.05 1.19 7.66 -2.39 -0.02 1.17 16 25 H 0.13 4.47 6.30 -2.91 -0.02 4.46 16 26 H 0.07 2.42 8.14 -2.38 -0.02 2.40 16 27 H 0.08 3.56 5.18 -2.39 -0.01 3.54 16 28 H 0.06 2.01 8.11 -2.39 -0.02 1.99 16 29 H 0.26 13.93 8.32 -92.71 -0.77 13.16 16 30 H 0.07 3.14 7.14 -2.39 -0.02 3.12 16 31 H 0.07 3.22 8.14 -2.39 -0.02 3.20 16 32 H 0.08 3.31 8.14 -2.39 -0.02 3.29 16 33 H 0.08 3.13 8.14 -2.39 -0.02 3.11 16 34 H 0.10 4.80 7.02 -2.91 -0.02 4.78 16 35 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 36 H 0.07 2.09 8.08 -2.39 -0.02 2.07 16 37 H 0.07 2.18 7.53 -2.39 -0.02 2.16 16 Total: -1.00 -59.11 301.81 6.31 -52.80 By element: Atomic # 1 Polarization: 20.32 SS G_CDS: 1.05 Total: 21.37 kcal Atomic # 6 Polarization: -61.91 SS G_CDS: 3.88 Total: -58.03 kcal Atomic # 7 Polarization: -48.55 SS G_CDS: 0.24 Total: -48.31 kcal Atomic # 8 Polarization: -11.36 SS G_CDS: -0.88 Total: -12.24 kcal Atomic # 14 Polarization: 42.39 SS G_CDS: 2.03 Total: 44.41 kcal Total: -59.11 6.31 -52.80 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260091866.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.105 kcal (2) G-P(sol) polarization free energy of solvation -59.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.008 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.311 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.802 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.697 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds