Wall clock time and date at job start Mon Mar 30 2020 05:46:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35893 * 117.00128 * 2 1 4 4 C 1.38756 * 120.05629 * 359.72612 * 3 2 1 5 5 C 1.38123 * 119.94399 * 179.69450 * 4 3 2 6 6 C 1.38297 * 120.05590 * 0.60194 * 5 4 3 7 7 C 1.50693 * 119.94542 * 179.69880 * 6 5 4 8 8 H 1.09001 * 109.47097 * 185.79058 * 7 6 5 9 9 C 1.50703 * 109.47318 * 305.78688 * 7 6 5 10 10 H 1.08001 * 119.99762 * 359.97438 * 9 7 6 11 11 C 1.37870 * 120.00197 * 180.02562 * 9 7 6 12 12 N 1.31512 * 120.00309 * 359.97438 * 11 9 7 13 13 Si 1.86800 * 119.99998 * 179.97438 * 11 9 7 14 14 H 1.48510 * 109.47198 * 59.99572 * 13 11 9 15 15 H 1.48501 * 109.47164 * 179.97438 * 13 11 9 16 16 H 1.48502 * 109.47271 * 299.99628 * 13 11 9 17 17 C 1.52998 * 109.47270 * 65.78890 * 7 6 5 18 18 C 1.52998 * 117.49976 * 128.62313 * 17 7 6 19 19 C 1.52994 * 117.50080 * 59.99979 * 17 7 6 20 20 C 1.38244 * 120.10542 * 359.67285 * 6 5 4 21 21 C 1.50700 * 119.96933 * 180.02562 * 20 6 5 22 22 C 1.38161 * 120.05899 * 0.02566 * 20 6 5 23 23 H 1.08999 * 109.47064 * 300.00586 * 1 2 3 24 24 H 1.09007 * 109.46721 * 59.99909 * 1 2 3 25 25 H 1.09001 * 109.47312 * 179.97438 * 1 2 3 26 26 H 1.07999 * 120.03205 * 359.97438 * 4 3 2 27 27 H 1.07997 * 119.97403 * 180.29694 * 5 4 3 28 28 H 0.96999 * 120.00416 * 180.02562 * 12 11 9 29 29 H 1.09005 * 115.54642 * 274.32561 * 17 7 6 30 30 H 1.08995 * 117.50043 * 359.97438 * 18 17 7 31 31 H 1.09003 * 117.49666 * 145.01698 * 18 17 7 32 32 H 1.09007 * 117.49945 * 214.97886 * 19 17 7 33 33 H 1.08995 * 117.49949 * 359.97438 * 19 17 7 34 34 H 1.09006 * 109.47058 * 275.44582 * 21 20 6 35 35 H 1.09008 * 109.47276 * 35.44006 * 21 20 6 36 36 H 1.09002 * 109.47434 * 155.44116 * 21 20 6 37 37 H 1.08002 * 120.02924 * 180.02562 * 22 20 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2915 2.3753 -0.0057 5 6 1.9209 3.6047 0.0007 6 6 3.3021 3.6757 0.0002 7 6 3.9862 5.0184 0.0003 8 1 5.0621 4.8780 -0.1038 9 6 3.4736 5.8436 -1.1519 10 1 2.7274 5.4362 -1.8179 11 6 3.9581 7.1180 -1.3564 12 7 4.8672 7.6140 -0.5457 13 14 3.3232 8.1405 -2.7850 14 1 1.8573 8.3322 -2.6436 15 1 3.9973 9.4637 -2.7848 16 1 3.6097 7.4387 -4.0619 17 6 3.6912 5.7411 1.3162 18 6 4.8824 6.2947 2.1007 19 6 4.1371 5.0601 2.6116 20 6 4.0560 2.5170 0.0002 21 6 5.5608 2.5980 0.0002 22 6 3.4311 1.2848 0.0001 23 1 -0.3633 0.5139 0.8899 24 1 -0.3633 0.5139 -0.8901 25 1 -0.3634 -1.0277 -0.0005 26 1 0.2129 2.3204 -0.0106 27 1 1.3341 4.5113 0.0010 28 1 5.2078 8.5108 -0.6894 29 1 2.7627 6.3116 1.3413 30 1 5.8763 6.1437 1.6796 31 1 4.7377 7.2297 2.6420 32 1 3.5022 5.1828 3.4891 33 1 4.6403 4.0970 2.5265 34 1 5.9185 2.7150 -1.0228 35 1 5.8787 3.4536 0.5962 36 1 5.9739 1.6841 0.4273 37 1 4.0206 0.3798 0.0005 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260095734.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:46:21 Heat of formation + Delta-G solvation = 0.150790 kcal Electronic energy + Delta-G solvation = -17965.140790 eV Core-core repulsion = 15287.174709 eV Total energy + Delta-G solvation = -2677.966081 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.70744 -37.83456 -35.84643 -32.65352 -31.92920 -30.69469 -28.12147 -26.23436 -25.92161 -23.36824 -21.63775 -21.17453 -20.25715 -18.84817 -17.25663 -16.56753 -15.63468 -15.41786 -14.90717 -14.43179 -13.86522 -13.70131 -13.27767 -13.17123 -12.76751 -12.53982 -12.08125 -11.78978 -11.78275 -11.47542 -11.09492 -10.93393 -10.67107 -10.55623 -10.40476 -10.29867 -9.82444 -9.73800 -9.64590 -8.69745 -8.63388 -8.26546 -8.12177 -7.26362 -5.97600 -4.03986 1.99771 2.20157 3.31861 3.36777 3.39960 3.63328 4.39404 4.51970 5.13607 5.18199 5.28603 5.32045 5.39011 5.51915 5.56768 5.79001 5.84338 5.97978 6.09031 6.11475 6.23506 6.28400 6.39449 6.44645 6.56025 6.59280 6.82799 6.93290 6.96256 7.10797 7.22875 7.31831 7.35615 7.44890 7.58395 7.85094 7.94357 8.02580 8.40880 8.97995 9.59732 11.07953 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.022439 B = 0.007390 C = 0.006443 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1247.511761 B = 3787.802900 C = 4344.438160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.327 6.327 3 C 0.096 3.904 4 C -0.215 4.215 5 C -0.068 4.068 6 C -0.058 4.058 7 C 0.104 3.896 8 H 0.045 0.955 9 C -0.515 4.515 10 H 0.056 0.944 11 C 0.068 3.932 12 N -0.875 5.875 13 Si 0.886 3.114 14 H -0.278 1.278 15 H -0.288 1.288 16 H -0.278 1.278 17 C -0.080 4.080 18 C -0.137 4.137 19 C -0.227 4.227 20 C -0.061 4.061 21 C -0.110 4.110 22 C -0.155 4.155 23 H 0.051 0.949 24 H 0.051 0.949 25 H 0.091 0.909 26 H 0.115 0.885 27 H 0.124 0.876 28 H 0.259 0.741 29 H 0.080 0.920 30 H 0.085 0.915 31 H 0.069 0.931 32 H 0.069 0.931 33 H 0.077 0.923 34 H 0.069 0.931 35 H 0.075 0.925 36 H 0.054 0.946 37 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.187 -9.412 2.852 10.689 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.241 6.241 3 C 0.052 3.948 4 C -0.234 4.234 5 C -0.086 4.086 6 C -0.058 4.058 7 C 0.086 3.914 8 H 0.062 0.938 9 C -0.553 4.553 10 H 0.074 0.926 11 C -0.135 4.135 12 N -0.512 5.512 13 Si 0.715 3.285 14 H -0.204 1.204 15 H -0.214 1.214 16 H -0.204 1.204 17 C -0.098 4.098 18 C -0.175 4.175 19 C -0.264 4.264 20 C -0.061 4.061 21 C -0.167 4.167 22 C -0.174 4.174 23 H 0.069 0.931 24 H 0.069 0.931 25 H 0.109 0.891 26 H 0.133 0.867 27 H 0.142 0.858 28 H 0.069 0.931 29 H 0.098 0.902 30 H 0.103 0.897 31 H 0.087 0.913 32 H 0.088 0.912 33 H 0.096 0.904 34 H 0.088 0.912 35 H 0.094 0.906 36 H 0.073 0.927 37 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -3.981 -9.427 2.887 10.633 hybrid contribution -0.747 0.875 -0.785 1.393 sum -4.727 -8.553 2.102 9.996 Atomic orbital electron populations 1.22908 0.79432 1.02897 1.01124 1.85981 1.20554 1.27813 1.89790 1.18817 0.92190 0.83564 1.00233 1.21134 0.99054 0.92741 1.10472 1.20863 0.94820 0.96193 0.96693 1.20297 0.93232 0.96184 0.96118 1.17544 0.95941 0.86145 0.91798 0.93756 1.21018 1.23902 0.98941 1.11415 0.92575 1.24938 0.94961 0.97654 0.95936 1.70007 1.28291 1.16340 1.36523 0.86756 0.79038 0.79490 0.83265 1.20414 1.21389 1.20377 1.22190 0.97386 0.99825 0.90440 1.22427 0.97849 0.94329 1.02850 1.23064 1.06522 0.97255 0.99545 1.19602 0.95891 0.91780 0.98868 1.20796 0.91413 1.01931 1.02548 1.20099 0.91015 0.97614 1.08663 0.93086 0.93063 0.89057 0.86694 0.85787 0.93121 0.90158 0.89672 0.91276 0.91245 0.90403 0.91241 0.90587 0.92733 0.86462 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 9.81 101.05 0.99 1.35 16 2 O -0.33 -5.19 10.50 -19.40 -0.20 -5.40 16 3 C 0.10 1.70 6.69 -39.22 -0.26 1.44 16 4 C -0.22 -3.82 9.04 -39.43 -0.36 -4.17 16 5 C -0.07 -1.36 8.76 -39.60 -0.35 -1.70 16 6 C -0.06 -1.24 4.41 -104.60 -0.46 -1.70 16 7 C 0.10 2.46 1.83 -92.93 -0.17 2.29 16 8 H 0.04 1.12 5.46 -51.93 -0.28 0.83 16 9 C -0.51 -13.54 8.06 -34.44 -0.28 -13.82 16 10 H 0.06 1.49 7.43 -52.49 -0.39 1.10 16 11 C 0.07 1.81 5.30 -17.82 -0.09 1.72 16 12 N -0.87 -23.70 11.44 55.43 0.63 -23.06 16 13 Si 0.89 20.83 29.54 -169.99 -5.02 15.81 16 14 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 15 H -0.29 -6.76 7.11 56.52 0.40 -6.35 16 16 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 17 C -0.08 -1.81 3.99 -90.62 -0.36 -2.18 16 18 C -0.14 -2.97 9.05 -26.73 -0.24 -3.21 16 19 C -0.23 -4.51 9.87 -26.74 -0.26 -4.77 16 20 C -0.06 -1.18 5.88 -104.65 -0.62 -1.80 16 21 C -0.11 -1.90 9.14 36.01 0.33 -1.57 16 22 C -0.16 -2.80 9.62 -39.44 -0.38 -3.18 16 23 H 0.05 0.54 7.67 -51.93 -0.40 0.14 16 24 H 0.05 0.55 7.65 -51.92 -0.40 0.16 16 25 H 0.09 0.79 8.14 -51.93 -0.42 0.36 16 26 H 0.12 1.72 6.30 -52.49 -0.33 1.39 16 27 H 0.12 2.50 7.90 -52.49 -0.41 2.09 16 28 H 0.26 6.82 8.31 -40.82 -0.34 6.48 16 29 H 0.08 1.93 8.11 -51.93 -0.42 1.51 16 30 H 0.08 1.92 8.05 -51.93 -0.42 1.50 16 31 H 0.07 1.45 8.14 -51.93 -0.42 1.03 16 32 H 0.07 1.27 8.14 -51.92 -0.42 0.85 16 33 H 0.08 1.51 8.07 -51.93 -0.42 1.09 16 34 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 35 H 0.08 1.38 6.46 -51.92 -0.34 1.04 16 36 H 0.05 0.78 8.05 -51.93 -0.42 0.37 16 37 H 0.12 1.88 8.06 -52.49 -0.42 1.46 16 LS Contribution 304.32 15.07 4.59 4.59 Total: -1.00 -27.81 304.32 -7.99 -35.80 By element: Atomic # 1 Polarization: 9.04 SS G_CDS: -5.47 Total: 3.56 kcal Atomic # 6 Polarization: -28.79 SS G_CDS: -2.51 Total: -31.30 kcal Atomic # 7 Polarization: -23.70 SS G_CDS: 0.63 Total: -23.06 kcal Atomic # 8 Polarization: -5.19 SS G_CDS: -0.20 Total: -5.40 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.81 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -27.81 -7.99 -35.80 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260095734.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.946 kcal (2) G-P(sol) polarization free energy of solvation -27.807 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.139 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.988 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.796 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.151 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds