Wall clock time and date at job start Mon Mar 30 2020 05:46:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35893 * 117.00128 * 2 1 4 4 C 1.38756 * 120.05629 * 359.72612 * 3 2 1 5 5 C 1.38123 * 119.94399 * 179.69450 * 4 3 2 6 6 C 1.38297 * 120.05590 * 0.60194 * 5 4 3 7 7 C 1.50693 * 119.94542 * 179.69880 * 6 5 4 8 8 H 1.09001 * 109.47097 * 185.79058 * 7 6 5 9 9 C 1.50703 * 109.47318 * 305.78688 * 7 6 5 10 10 H 1.08001 * 119.99762 * 359.97438 * 9 7 6 11 11 C 1.37870 * 120.00197 * 180.02562 * 9 7 6 12 12 N 1.31512 * 120.00309 * 359.97438 * 11 9 7 13 13 Si 1.86800 * 119.99998 * 179.97438 * 11 9 7 14 14 H 1.48510 * 109.47198 * 59.99572 * 13 11 9 15 15 H 1.48501 * 109.47164 * 179.97438 * 13 11 9 16 16 H 1.48502 * 109.47271 * 299.99628 * 13 11 9 17 17 C 1.52998 * 109.47270 * 65.78890 * 7 6 5 18 18 C 1.52998 * 117.49976 * 128.62313 * 17 7 6 19 19 C 1.52994 * 117.50080 * 59.99979 * 17 7 6 20 20 C 1.38244 * 120.10542 * 359.67285 * 6 5 4 21 21 C 1.50700 * 119.96933 * 180.02562 * 20 6 5 22 22 C 1.38161 * 120.05899 * 0.02566 * 20 6 5 23 23 H 1.08999 * 109.47064 * 300.00586 * 1 2 3 24 24 H 1.09007 * 109.46721 * 59.99909 * 1 2 3 25 25 H 1.09001 * 109.47312 * 179.97438 * 1 2 3 26 26 H 1.07999 * 120.03205 * 359.97438 * 4 3 2 27 27 H 1.07997 * 119.97403 * 180.29694 * 5 4 3 28 28 H 0.96999 * 120.00416 * 180.02562 * 12 11 9 29 29 H 1.09005 * 115.54642 * 274.32561 * 17 7 6 30 30 H 1.08995 * 117.50043 * 359.97438 * 18 17 7 31 31 H 1.09003 * 117.49666 * 145.01698 * 18 17 7 32 32 H 1.09007 * 117.49945 * 214.97886 * 19 17 7 33 33 H 1.08995 * 117.49949 * 359.97438 * 19 17 7 34 34 H 1.09006 * 109.47058 * 275.44582 * 21 20 6 35 35 H 1.09008 * 109.47276 * 35.44006 * 21 20 6 36 36 H 1.09002 * 109.47434 * 155.44116 * 21 20 6 37 37 H 1.08002 * 120.02924 * 180.02562 * 22 20 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2915 2.3753 -0.0057 5 6 1.9209 3.6047 0.0007 6 6 3.3021 3.6757 0.0002 7 6 3.9862 5.0184 0.0003 8 1 5.0621 4.8780 -0.1038 9 6 3.4736 5.8436 -1.1519 10 1 2.7274 5.4362 -1.8179 11 6 3.9581 7.1180 -1.3564 12 7 4.8672 7.6140 -0.5457 13 14 3.3232 8.1405 -2.7850 14 1 1.8573 8.3322 -2.6436 15 1 3.9973 9.4637 -2.7848 16 1 3.6097 7.4387 -4.0619 17 6 3.6912 5.7411 1.3162 18 6 4.8824 6.2947 2.1007 19 6 4.1371 5.0601 2.6116 20 6 4.0560 2.5170 0.0002 21 6 5.5608 2.5980 0.0002 22 6 3.4311 1.2848 0.0001 23 1 -0.3633 0.5139 0.8899 24 1 -0.3633 0.5139 -0.8901 25 1 -0.3634 -1.0277 -0.0005 26 1 0.2129 2.3204 -0.0106 27 1 1.3341 4.5113 0.0010 28 1 5.2078 8.5108 -0.6894 29 1 2.7627 6.3116 1.3413 30 1 5.8763 6.1437 1.6796 31 1 4.7377 7.2297 2.6420 32 1 3.5022 5.1828 3.4891 33 1 4.6403 4.0970 2.5265 34 1 5.9185 2.7150 -1.0228 35 1 5.8787 3.4536 0.5962 36 1 5.9739 1.6841 0.4273 37 1 4.0206 0.3798 0.0005 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260095734.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:46:21 Heat of formation + Delta-G solvation = -12.891604 kcal Electronic energy + Delta-G solvation = -17965.706350 eV Core-core repulsion = 15287.174709 eV Total energy + Delta-G solvation = -2678.531642 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.08062 -39.28095 -37.43734 -34.60375 -33.34441 -32.29883 -29.51573 -27.59694 -27.33187 -25.18660 -23.18527 -22.85445 -21.71475 -20.54946 -18.58100 -18.40722 -17.02892 -16.67676 -16.52800 -16.19474 -15.50802 -15.09057 -14.84683 -14.60630 -14.22662 -13.98528 -13.87749 -13.17601 -13.05428 -12.82675 -12.79762 -12.61489 -12.42590 -12.18770 -11.99706 -11.80875 -11.50614 -11.41864 -11.40504 -10.57235 -10.45073 -10.12858 -9.55776 -8.73793 -7.99588 -6.11555 0.55253 0.73239 1.42980 1.44108 1.50653 2.47193 2.49557 2.99540 3.26776 3.42583 4.02871 4.07700 4.27558 4.33671 4.40216 4.44501 4.50438 4.54536 4.59035 4.69918 4.76578 4.77933 4.87501 4.93811 5.04730 5.10528 5.20047 5.32109 5.43221 5.50653 5.53612 5.65983 5.71013 5.76030 5.92565 6.02255 6.21067 6.47374 6.62817 6.95646 7.53782 9.03457 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.022439 B = 0.007390 C = 0.006443 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1247.511761 B = 3787.802900 C = 4344.438160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.335 6.335 3 C 0.101 3.899 4 C -0.212 4.212 5 C -0.081 4.081 6 C -0.086 4.086 7 C 0.111 3.889 8 H 0.023 0.977 9 C -0.529 4.529 10 H 0.045 0.955 11 C 0.026 3.974 12 N -0.894 5.894 13 Si 0.940 3.060 14 H -0.276 1.276 15 H -0.285 1.285 16 H -0.278 1.278 17 C -0.097 4.097 18 C -0.140 4.140 19 C -0.193 4.193 20 C -0.069 4.069 21 C -0.107 4.107 22 C -0.159 4.159 23 H 0.060 0.940 24 H 0.057 0.943 25 H 0.122 0.878 26 H 0.142 0.858 27 H 0.112 0.888 28 H 0.257 0.743 29 H 0.060 0.940 30 H 0.070 0.930 31 H 0.072 0.928 32 H 0.090 0.910 33 H 0.084 0.916 34 H 0.066 0.934 35 H 0.060 0.940 36 H 0.085 0.915 37 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.154 -11.165 3.127 12.688 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.249 6.249 3 C 0.056 3.944 4 C -0.231 4.231 5 C -0.100 4.100 6 C -0.086 4.086 7 C 0.092 3.908 8 H 0.041 0.959 9 C -0.567 4.567 10 H 0.063 0.937 11 C -0.175 4.175 12 N -0.532 5.532 13 Si 0.767 3.233 14 H -0.201 1.201 15 H -0.211 1.211 16 H -0.203 1.203 17 C -0.116 4.116 18 C -0.178 4.178 19 C -0.230 4.230 20 C -0.069 4.069 21 C -0.163 4.163 22 C -0.178 4.178 23 H 0.078 0.922 24 H 0.076 0.924 25 H 0.140 0.860 26 H 0.160 0.840 27 H 0.130 0.870 28 H 0.067 0.933 29 H 0.078 0.922 30 H 0.089 0.911 31 H 0.090 0.910 32 H 0.109 0.891 33 H 0.103 0.897 34 H 0.084 0.916 35 H 0.078 0.922 36 H 0.103 0.897 37 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -4.961 -11.190 3.162 12.642 hybrid contribution -0.527 1.310 -0.873 1.660 sum -5.488 -9.880 2.289 11.531 Atomic orbital electron populations 1.23276 0.76970 1.05309 1.01853 1.85985 1.23059 1.26573 1.89317 1.18939 0.92366 0.84287 0.98771 1.21319 1.00488 0.91773 1.09499 1.20835 0.94466 0.96895 0.97777 1.20174 0.93926 0.95655 0.98822 1.17319 0.94656 0.87452 0.91334 0.95901 1.21306 1.23579 0.99576 1.12202 0.93671 1.25547 0.95327 0.98629 0.97995 1.70112 1.29057 1.16375 1.37626 0.85908 0.78540 0.78164 0.80715 1.20139 1.21065 1.20338 1.21992 0.96883 1.01088 0.91659 1.22345 0.96821 0.95511 1.03078 1.23041 1.05007 0.96581 0.98404 1.19785 0.96753 0.91714 0.98652 1.20778 0.90451 1.02789 1.02315 1.20341 0.91665 0.97766 1.07981 0.92172 0.92444 0.85977 0.84014 0.87005 0.93342 0.92174 0.91092 0.90966 0.89130 0.89726 0.91580 0.92162 0.89651 0.84297 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.39 9.81 113.37 1.11 1.50 16 2 O -0.33 -9.57 10.50 -92.35 -0.97 -10.54 16 3 C 0.10 3.35 6.69 22.51 0.15 3.50 16 4 C -0.21 -7.16 9.04 22.37 0.20 -6.96 16 5 C -0.08 -3.27 8.76 22.26 0.19 -3.08 16 6 C -0.09 -3.67 4.41 -19.85 -0.09 -3.76 16 7 C 0.11 5.39 1.83 -12.29 -0.02 5.36 16 8 H 0.02 1.20 5.46 -2.39 -0.01 1.19 16 9 C -0.53 -28.59 8.06 25.60 0.21 -28.39 16 10 H 0.05 2.47 7.43 -2.91 -0.02 2.45 16 11 C 0.03 1.40 5.30 84.65 0.45 1.85 16 12 N -0.89 -49.53 11.44 21.44 0.25 -49.28 16 13 Si 0.94 43.37 29.54 68.60 2.03 45.40 16 14 H -0.28 -12.51 7.11 99.48 0.71 -11.81 16 15 H -0.29 -12.92 7.11 99.48 0.71 -12.21 16 16 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 17 C -0.10 -4.52 3.99 -10.80 -0.04 -4.57 16 18 C -0.14 -6.14 9.05 30.59 0.28 -5.86 16 19 C -0.19 -7.54 9.87 30.59 0.30 -7.24 16 20 C -0.07 -2.61 5.88 -19.88 -0.12 -2.73 16 21 C -0.11 -3.60 9.14 71.24 0.65 -2.95 16 22 C -0.16 -5.41 9.62 22.36 0.22 -5.19 16 23 H 0.06 1.06 7.67 -2.39 -0.02 1.05 16 24 H 0.06 1.05 7.65 -2.38 -0.02 1.03 16 25 H 0.12 1.60 8.14 -2.39 -0.02 1.58 16 26 H 0.14 3.88 6.30 -2.91 -0.02 3.87 16 27 H 0.11 4.64 7.90 -2.91 -0.02 4.62 16 28 H 0.26 13.80 8.31 -92.71 -0.77 13.03 16 29 H 0.06 2.99 8.11 -2.38 -0.02 2.97 16 30 H 0.07 3.28 8.05 -2.39 -0.02 3.27 16 31 H 0.07 3.06 8.14 -2.39 -0.02 3.04 16 32 H 0.09 3.15 8.14 -2.38 -0.02 3.13 16 33 H 0.08 3.19 8.07 -2.39 -0.02 3.17 16 34 H 0.07 2.24 8.14 -2.38 -0.02 2.22 16 35 H 0.06 2.20 6.46 -2.38 -0.02 2.19 16 36 H 0.08 2.28 8.05 -2.39 -0.02 2.26 16 37 H 0.14 4.04 8.06 -2.91 -0.02 4.02 16 Total: -1.00 -59.70 304.32 5.84 -53.86 By element: Atomic # 1 Polarization: 18.02 SS G_CDS: 1.04 Total: 19.06 kcal Atomic # 6 Polarization: -62.00 SS G_CDS: 3.49 Total: -58.50 kcal Atomic # 7 Polarization: -49.53 SS G_CDS: 0.25 Total: -49.28 kcal Atomic # 8 Polarization: -9.57 SS G_CDS: -0.97 Total: -10.54 kcal Atomic # 14 Polarization: 43.37 SS G_CDS: 2.03 Total: 45.40 kcal Total: -59.70 5.84 -53.86 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260095734.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.973 kcal (2) G-P(sol) polarization free energy of solvation -59.702 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.729 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.837 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.865 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds