Wall clock time and date at job start Mon Mar 30 2020 05:53:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35898 * 117.00126 * 2 1 4 4 C 1.38750 * 120.05501 * 0.02562 * 3 2 1 5 5 C 1.38123 * 119.94904 * 180.02562 * 4 3 2 6 6 C 1.50699 * 119.97853 * 179.97438 * 5 4 3 7 7 C 1.38286 * 120.05419 * 0.02562 * 5 4 3 8 8 C 1.38250 * 120.11249 * 359.97438 * 7 5 4 9 9 C 1.50700 * 119.97551 * 179.97438 * 8 7 5 10 10 H 1.08998 * 109.46759 * 0.02562 * 9 8 7 11 11 C 1.50696 * 109.47511 * 240.00297 * 9 8 7 12 12 H 1.07993 * 120.00211 * 265.22942 * 11 9 8 13 13 C 1.37875 * 119.99812 * 85.22290 * 11 9 8 14 14 N 1.31514 * 120.00232 * 5.09130 * 13 11 9 15 15 Si 1.86804 * 119.99961 * 185.09308 * 13 11 9 16 16 H 1.48496 * 109.47250 * 89.99885 * 15 13 11 17 17 H 1.48499 * 109.46952 * 209.99918 * 15 13 11 18 18 H 1.48501 * 109.47077 * 329.99998 * 15 13 11 19 19 C 1.53000 * 109.46654 * 120.00171 * 9 8 7 20 20 C 1.52998 * 117.49997 * 254.13118 * 19 9 8 21 21 C 1.53000 * 117.49506 * 185.47222 * 19 9 8 22 22 C 1.38165 * 120.05158 * 359.68371 * 8 7 5 23 23 H 1.08993 * 109.47340 * 60.00161 * 1 2 3 24 24 H 1.08998 * 109.46855 * 179.97438 * 1 2 3 25 25 H 1.08995 * 109.46624 * 299.99712 * 1 2 3 26 26 H 1.07999 * 120.02982 * 359.97438 * 4 3 2 27 27 H 1.08999 * 109.47263 * 89.99754 * 6 5 4 28 28 H 1.08995 * 109.47517 * 209.99797 * 6 5 4 29 29 H 1.09009 * 109.46763 * 330.00421 * 6 5 4 30 30 H 1.07998 * 119.95196 * 179.97438 * 7 5 4 31 31 H 0.96994 * 120.00289 * 179.97438 * 14 13 11 32 32 H 1.09004 * 115.55285 * 39.80331 * 19 9 8 33 33 H 1.09000 * 117.50111 * 0.02562 * 20 19 9 34 34 H 1.08999 * 117.50113 * 145.02197 * 20 19 9 35 35 H 1.09003 * 117.49593 * 214.97669 * 21 19 9 36 36 H 1.08996 * 117.50493 * 359.97438 * 21 19 9 37 37 H 1.08003 * 120.02969 * 180.29667 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2915 2.3752 0.0005 5 6 1.9208 3.6047 0.0000 6 6 1.1019 4.8698 0.0000 7 6 3.3018 3.6758 -0.0016 8 6 4.0560 2.5172 -0.0021 9 6 5.5608 2.5982 -0.0045 10 1 5.8683 3.6440 -0.0050 11 6 6.0989 1.9153 -1.2354 12 1 6.4083 0.8818 -1.1878 13 6 6.1959 2.6101 -2.4223 14 7 5.9141 3.8942 -2.4577 15 14 6.7275 1.7273 -3.9805 16 1 5.5313 1.1922 -4.6789 17 1 7.4362 2.6803 -4.8720 18 1 7.6376 0.6078 -3.6291 19 6 6.1107 1.9061 1.2443 20 6 6.6506 2.7962 2.3655 21 6 7.6178 1.9916 1.4935 22 6 3.4312 1.2849 0.0055 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3632 0.5138 0.8900 26 1 0.2129 2.3203 0.0005 27 1 0.9049 5.1751 1.0276 28 1 1.6514 5.6584 -0.5142 29 1 0.1571 4.6910 -0.5134 30 1 3.7922 4.6381 -0.0024 31 1 5.9827 4.3830 -3.2926 32 1 5.6043 0.9849 1.5327 33 1 6.6138 3.8749 2.2137 34 1 6.4998 2.4605 3.3915 35 1 8.1029 1.1268 1.9463 36 1 8.2177 2.5405 0.7677 37 1 4.0207 0.3800 0.0099 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260101727.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:53:08 Heat of formation + Delta-G solvation = -5.353728 kcal Electronic energy + Delta-G solvation = -17828.944930 eV Core-core repulsion = 15150.740155 eV Total energy + Delta-G solvation = -2678.204775 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.49993 -37.51301 -36.21165 -33.12010 -31.86280 -29.96691 -27.45669 -27.23125 -25.69648 -23.60500 -21.52331 -21.06243 -20.64344 -18.75898 -16.91866 -16.35118 -15.44729 -15.27334 -15.11606 -14.76103 -14.41741 -13.47203 -13.22222 -13.03765 -12.79682 -12.28761 -12.14111 -11.71332 -11.58709 -11.40626 -11.21464 -10.94634 -10.73153 -10.65114 -10.52980 -10.29758 -10.18655 -9.82471 -9.34742 -9.22202 -8.68942 -8.44460 -7.63512 -7.31608 -6.04085 -4.06209 2.25039 2.37777 3.32046 3.38630 3.41514 3.81209 4.41012 4.68043 4.80871 5.26741 5.28987 5.38566 5.46711 5.54260 5.59982 5.72675 5.75113 5.91121 5.95913 5.98663 6.14773 6.24583 6.33237 6.37341 6.46208 6.51747 6.69144 6.81026 6.92145 6.99625 7.11844 7.20248 7.36927 7.55987 7.72817 7.86087 7.97636 8.16208 8.36356 8.98889 9.56702 11.04053 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.015756 B = 0.008509 C = 0.007550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1776.699566 B = 3289.805067 C = 3707.497251 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.324 6.324 3 C 0.112 3.888 4 C -0.237 4.237 5 C -0.063 4.063 6 C -0.107 4.107 7 C -0.145 4.145 8 C 0.025 3.975 9 C 0.095 3.905 10 H 0.063 0.937 11 C -0.500 4.500 12 H 0.059 0.941 13 C 0.067 3.933 14 N -0.884 5.884 15 Si 0.888 3.112 16 H -0.280 1.280 17 H -0.287 1.287 18 H -0.273 1.273 19 C -0.119 4.119 20 C -0.200 4.200 21 C -0.172 4.172 22 C -0.148 4.148 23 H 0.049 0.951 24 H 0.090 0.910 25 H 0.048 0.952 26 H 0.111 0.889 27 H 0.062 0.938 28 H 0.064 0.936 29 H 0.056 0.944 30 H 0.116 0.884 31 H 0.261 0.739 32 H 0.086 0.914 33 H 0.086 0.914 34 H 0.076 0.924 35 H 0.076 0.924 36 H 0.095 0.905 37 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.752 -1.623 5.933 9.896 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.238 6.238 3 C 0.068 3.932 4 C -0.256 4.256 5 C -0.063 4.063 6 C -0.164 4.164 7 C -0.163 4.163 8 C 0.024 3.976 9 C 0.077 3.923 10 H 0.081 0.919 11 C -0.538 4.538 12 H 0.077 0.923 13 C -0.136 4.136 14 N -0.522 5.522 15 Si 0.716 3.284 16 H -0.206 1.206 17 H -0.213 1.213 18 H -0.198 1.198 19 C -0.137 4.137 20 C -0.237 4.237 21 C -0.209 4.209 22 C -0.166 4.166 23 H 0.067 0.933 24 H 0.108 0.892 25 H 0.067 0.933 26 H 0.129 0.871 27 H 0.081 0.919 28 H 0.083 0.917 29 H 0.075 0.925 30 H 0.134 0.866 31 H 0.071 0.929 32 H 0.104 0.896 33 H 0.105 0.895 34 H 0.095 0.905 35 H 0.095 0.905 36 H 0.113 0.887 37 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -7.668 -1.647 5.801 9.755 hybrid contribution -0.120 -0.327 -1.098 1.152 sum -7.788 -1.974 4.703 9.309 Atomic orbital electron populations 1.22875 0.79853 1.02756 1.00816 1.86030 1.20219 1.27986 1.89580 1.19013 0.92484 0.83276 0.98419 1.20696 0.98436 0.92129 1.14294 1.19555 0.94210 0.93771 0.98793 1.20710 0.98846 0.95458 1.01373 1.20868 0.92039 0.98779 1.04651 1.20453 0.98347 0.90522 0.88290 1.17656 0.85782 0.98183 0.90698 0.91869 1.20914 1.41661 0.97961 0.93260 0.92262 1.24964 0.94923 0.94711 0.98977 1.69918 1.48535 1.07034 1.26677 0.86641 0.78726 0.79627 0.83376 1.20646 1.21311 1.19759 1.22458 0.95245 0.99362 0.96638 1.22984 1.07151 0.98236 0.95342 1.22730 0.93905 1.01695 1.02548 1.20216 0.89968 0.99043 1.07417 0.93264 0.89165 0.93318 0.87113 0.91941 0.91651 0.92545 0.86617 0.92908 0.89609 0.89512 0.90519 0.90539 0.88668 0.86095 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.42 9.81 101.05 0.99 1.41 16 2 O -0.32 -5.91 10.50 -19.42 -0.20 -6.11 16 3 C 0.11 2.27 6.69 -39.22 -0.26 2.01 16 4 C -0.24 -4.41 8.69 -39.43 -0.34 -4.75 16 5 C -0.06 -1.21 5.88 -104.65 -0.62 -1.82 16 6 C -0.11 -1.61 10.01 36.01 0.36 -1.25 16 7 C -0.15 -3.17 9.32 -39.56 -0.37 -3.54 16 8 C 0.02 0.57 4.77 -104.64 -0.50 0.07 16 9 C 0.10 2.30 2.06 -92.93 -0.19 2.10 16 10 H 0.06 1.67 7.07 -51.93 -0.37 1.30 16 11 C -0.50 -13.29 7.73 -34.44 -0.27 -13.55 16 12 H 0.06 1.58 7.81 -52.49 -0.41 1.17 16 13 C 0.07 1.83 5.45 -17.82 -0.10 1.73 16 14 N -0.88 -24.89 12.92 55.43 0.72 -24.17 16 15 Si 0.89 21.38 29.54 -169.99 -5.02 16.36 16 16 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 17 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 18 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 19 C -0.12 -2.48 4.92 -90.62 -0.45 -2.92 16 20 C -0.20 -3.65 10.18 -26.69 -0.27 -3.92 16 21 C -0.17 -3.28 10.02 -26.69 -0.27 -3.55 16 22 C -0.15 -3.29 8.61 -39.43 -0.34 -3.63 16 23 H 0.05 0.60 7.66 -51.93 -0.40 0.21 16 24 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 25 H 0.05 0.57 7.66 -51.93 -0.40 0.17 16 26 H 0.11 1.73 6.30 -52.49 -0.33 1.40 16 27 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 28 H 0.06 0.97 8.08 -51.93 -0.42 0.55 16 29 H 0.06 0.75 8.09 -51.92 -0.42 0.33 16 30 H 0.12 2.54 7.94 -52.49 -0.42 2.13 16 31 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 32 H 0.09 1.75 7.40 -51.93 -0.38 1.36 16 33 H 0.09 1.59 8.08 -51.93 -0.42 1.17 16 34 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 35 H 0.08 1.30 8.14 -51.93 -0.42 0.87 16 36 H 0.09 1.95 8.14 -51.93 -0.42 1.52 16 37 H 0.12 2.69 7.78 -52.48 -0.41 2.28 16 LS Contribution 311.31 15.07 4.69 4.69 Total: -1.00 -28.80 311.31 -8.05 -36.86 By element: Atomic # 1 Polarization: 9.60 SS G_CDS: -5.62 Total: 3.98 kcal Atomic # 6 Polarization: -28.99 SS G_CDS: -2.62 Total: -31.61 kcal Atomic # 7 Polarization: -24.89 SS G_CDS: 0.72 Total: -24.17 kcal Atomic # 8 Polarization: -5.91 SS G_CDS: -0.20 Total: -6.11 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -28.80 -8.05 -36.86 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260101727.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.502 kcal (2) G-P(sol) polarization free energy of solvation -28.801 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.700 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.855 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.354 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds