Wall clock time and date at job start Mon Mar 30 2020 05:53:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35898 * 117.00126 * 2 1 4 4 C 1.38750 * 120.05501 * 0.02562 * 3 2 1 5 5 C 1.38123 * 119.94904 * 180.02562 * 4 3 2 6 6 C 1.50699 * 119.97853 * 179.97438 * 5 4 3 7 7 C 1.38286 * 120.05419 * 0.02562 * 5 4 3 8 8 C 1.38250 * 120.11249 * 359.97438 * 7 5 4 9 9 C 1.50700 * 119.97551 * 179.97438 * 8 7 5 10 10 H 1.08998 * 109.46759 * 0.02562 * 9 8 7 11 11 C 1.50696 * 109.47511 * 240.00297 * 9 8 7 12 12 H 1.07993 * 120.00211 * 265.22942 * 11 9 8 13 13 C 1.37875 * 119.99812 * 85.22290 * 11 9 8 14 14 N 1.31514 * 120.00232 * 5.09130 * 13 11 9 15 15 Si 1.86804 * 119.99961 * 185.09308 * 13 11 9 16 16 H 1.48496 * 109.47250 * 89.99885 * 15 13 11 17 17 H 1.48499 * 109.46952 * 209.99918 * 15 13 11 18 18 H 1.48501 * 109.47077 * 329.99998 * 15 13 11 19 19 C 1.53000 * 109.46654 * 120.00171 * 9 8 7 20 20 C 1.52998 * 117.49997 * 254.13118 * 19 9 8 21 21 C 1.53000 * 117.49506 * 185.47222 * 19 9 8 22 22 C 1.38165 * 120.05158 * 359.68371 * 8 7 5 23 23 H 1.08993 * 109.47340 * 60.00161 * 1 2 3 24 24 H 1.08998 * 109.46855 * 179.97438 * 1 2 3 25 25 H 1.08995 * 109.46624 * 299.99712 * 1 2 3 26 26 H 1.07999 * 120.02982 * 359.97438 * 4 3 2 27 27 H 1.08999 * 109.47263 * 89.99754 * 6 5 4 28 28 H 1.08995 * 109.47517 * 209.99797 * 6 5 4 29 29 H 1.09009 * 109.46763 * 330.00421 * 6 5 4 30 30 H 1.07998 * 119.95196 * 179.97438 * 7 5 4 31 31 H 0.96994 * 120.00289 * 179.97438 * 14 13 11 32 32 H 1.09004 * 115.55285 * 39.80331 * 19 9 8 33 33 H 1.09000 * 117.50111 * 0.02562 * 20 19 9 34 34 H 1.08999 * 117.50113 * 145.02197 * 20 19 9 35 35 H 1.09003 * 117.49593 * 214.97669 * 21 19 9 36 36 H 1.08996 * 117.50493 * 359.97438 * 21 19 9 37 37 H 1.08003 * 120.02969 * 180.29667 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2915 2.3752 0.0005 5 6 1.9208 3.6047 0.0000 6 6 1.1019 4.8698 0.0000 7 6 3.3018 3.6758 -0.0016 8 6 4.0560 2.5172 -0.0021 9 6 5.5608 2.5982 -0.0045 10 1 5.8683 3.6440 -0.0050 11 6 6.0989 1.9153 -1.2354 12 1 6.4083 0.8818 -1.1878 13 6 6.1959 2.6101 -2.4223 14 7 5.9141 3.8942 -2.4577 15 14 6.7275 1.7273 -3.9805 16 1 5.5313 1.1922 -4.6789 17 1 7.4362 2.6803 -4.8720 18 1 7.6376 0.6078 -3.6291 19 6 6.1107 1.9061 1.2443 20 6 6.6506 2.7962 2.3655 21 6 7.6178 1.9916 1.4935 22 6 3.4312 1.2849 0.0055 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3632 0.5138 0.8900 26 1 0.2129 2.3203 0.0005 27 1 0.9049 5.1751 1.0276 28 1 1.6514 5.6584 -0.5142 29 1 0.1571 4.6910 -0.5134 30 1 3.7922 4.6381 -0.0024 31 1 5.9827 4.3830 -3.2926 32 1 5.6043 0.9849 1.5327 33 1 6.6138 3.8749 2.2137 34 1 6.4998 2.4605 3.3915 35 1 8.1029 1.1268 1.9463 36 1 8.2177 2.5405 0.7677 37 1 4.0207 0.3800 0.0099 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260101727.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:53:07 Heat of formation + Delta-G solvation = -19.664492 kcal Electronic energy + Delta-G solvation = -17829.565491 eV Core-core repulsion = 15150.740155 eV Total energy + Delta-G solvation = -2678.825336 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.99652 -39.05937 -37.74208 -34.96689 -33.53876 -31.56208 -29.02152 -28.61842 -27.09054 -25.52032 -23.05339 -22.56684 -22.21246 -20.46656 -18.43277 -18.24241 -16.95495 -16.70294 -16.63746 -16.51421 -16.04625 -15.01522 -14.69442 -14.44841 -14.32344 -13.84217 -13.68824 -13.26934 -13.02557 -12.90460 -12.83512 -12.63382 -12.45743 -12.23674 -12.15025 -11.94154 -11.73935 -11.44191 -11.09576 -10.95664 -10.51192 -10.38104 -9.26401 -8.88418 -8.10518 -6.18063 0.66495 0.77217 1.38344 1.40425 1.48903 2.41934 2.52012 3.04394 3.18958 3.27231 3.97950 4.04227 4.21955 4.30154 4.37708 4.40801 4.44156 4.44998 4.62644 4.69799 4.76754 4.84285 4.87402 4.90612 4.93152 5.01152 5.11824 5.21394 5.33257 5.45300 5.50784 5.54709 5.71436 5.76797 5.85925 6.11971 6.15441 6.42208 6.67385 6.92144 7.46472 8.96345 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.015756 B = 0.008509 C = 0.007550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1776.699566 B = 3289.805067 C = 3707.497251 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.341 6.341 3 C 0.115 3.885 4 C -0.233 4.233 5 C -0.059 4.059 6 C -0.105 4.105 7 C -0.172 4.172 8 C 0.006 3.994 9 C 0.100 3.900 10 H 0.028 0.972 11 C -0.506 4.506 12 H 0.051 0.949 13 C 0.019 3.981 14 N -0.913 5.913 15 Si 0.942 3.058 16 H -0.283 1.283 17 H -0.283 1.283 18 H -0.266 1.266 19 C -0.142 4.142 20 C -0.178 4.178 21 C -0.169 4.169 22 C -0.174 4.174 23 H 0.058 0.942 24 H 0.119 0.881 25 H 0.065 0.935 26 H 0.149 0.851 27 H 0.085 0.915 28 H 0.060 0.940 29 H 0.081 0.919 30 H 0.101 0.899 31 H 0.260 0.740 32 H 0.089 0.911 33 H 0.080 0.920 34 H 0.107 0.893 35 H 0.103 0.897 36 H 0.074 0.926 37 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.740 -2.299 6.603 11.990 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.255 6.255 3 C 0.070 3.930 4 C -0.251 4.251 5 C -0.059 4.059 6 C -0.161 4.161 7 C -0.190 4.190 8 C 0.006 3.994 9 C 0.081 3.919 10 H 0.046 0.954 11 C -0.544 4.544 12 H 0.069 0.931 13 C -0.180 4.180 14 N -0.552 5.552 15 Si 0.768 3.232 16 H -0.209 1.209 17 H -0.208 1.208 18 H -0.190 1.190 19 C -0.160 4.160 20 C -0.215 4.215 21 C -0.206 4.206 22 C -0.193 4.193 23 H 0.076 0.924 24 H 0.138 0.862 25 H 0.084 0.916 26 H 0.167 0.833 27 H 0.104 0.896 28 H 0.079 0.921 29 H 0.099 0.901 30 H 0.119 0.881 31 H 0.069 0.931 32 H 0.107 0.893 33 H 0.098 0.902 34 H 0.126 0.874 35 H 0.121 0.879 36 H 0.093 0.907 37 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -9.659 -2.335 6.480 11.863 hybrid contribution 0.386 -0.165 -1.248 1.317 sum -9.273 -2.500 5.232 10.936 Atomic orbital electron populations 1.23289 0.76800 1.05276 1.02020 1.86013 1.23335 1.27017 1.89158 1.19069 0.91999 0.84737 0.97146 1.21069 1.00229 0.91044 1.12754 1.20002 0.93381 0.96006 0.96490 1.20777 0.99019 0.93136 1.03172 1.20887 0.93664 0.97694 1.06792 1.20340 0.97746 0.91560 0.89789 1.17450 0.87040 0.96008 0.91389 0.95357 1.21171 1.41181 0.97555 0.94517 0.93084 1.25630 0.95478 0.95350 1.01564 1.70037 1.50042 1.08078 1.27014 0.85793 0.78268 0.78825 0.80273 1.20888 1.20833 1.19033 1.22339 0.96527 1.00239 0.96884 1.23022 1.04871 0.97577 0.96038 1.22754 0.92768 1.02617 1.02430 1.20147 0.91408 0.98104 1.09613 0.92358 0.86245 0.91611 0.83342 0.89620 0.92059 0.90059 0.88127 0.93138 0.89257 0.90154 0.87436 0.87884 0.90730 0.87372 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.45 9.81 113.37 1.11 1.56 16 2 O -0.34 -11.79 10.50 -92.40 -0.97 -12.76 16 3 C 0.12 4.54 6.69 22.51 0.15 4.70 16 4 C -0.23 -8.08 8.69 22.36 0.19 -7.88 16 5 C -0.06 -2.16 5.88 -19.88 -0.12 -2.28 16 6 C -0.10 -2.85 10.01 71.24 0.71 -2.14 16 7 C -0.17 -7.70 9.32 22.28 0.21 -7.49 16 8 C 0.01 0.30 4.77 -19.88 -0.09 0.21 16 9 C 0.10 5.03 2.06 -12.29 -0.03 5.00 16 10 H 0.03 1.59 7.07 -2.39 -0.02 1.57 16 11 C -0.51 -27.93 7.73 25.60 0.20 -27.74 16 12 H 0.05 2.82 7.81 -2.91 -0.02 2.80 16 13 C 0.02 1.08 5.45 84.65 0.46 1.54 16 14 N -0.91 -53.30 12.92 21.45 0.28 -53.02 16 15 Si 0.94 44.78 29.54 68.60 2.03 46.80 16 16 H -0.28 -13.44 7.11 99.48 0.71 -12.74 16 17 H -0.28 -13.12 7.11 99.48 0.71 -12.41 16 18 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 19 C -0.14 -6.04 4.92 -10.79 -0.05 -6.09 16 20 C -0.18 -6.41 10.18 30.62 0.31 -6.10 16 21 C -0.17 -6.45 10.02 30.62 0.31 -6.14 16 22 C -0.17 -7.91 8.61 22.37 0.19 -7.72 16 23 H 0.06 1.20 7.66 -2.39 -0.02 1.18 16 24 H 0.12 1.95 8.14 -2.39 -0.02 1.93 16 25 H 0.07 1.25 7.66 -2.39 -0.02 1.23 16 26 H 0.15 3.97 6.30 -2.91 -0.02 3.95 16 27 H 0.09 1.98 8.14 -2.39 -0.02 1.96 16 28 H 0.06 1.73 8.08 -2.39 -0.02 1.71 16 29 H 0.08 1.83 8.09 -2.38 -0.02 1.81 16 30 H 0.10 4.67 7.94 -2.91 -0.02 4.65 16 31 H 0.26 14.53 8.31 -92.71 -0.77 13.76 16 32 H 0.09 3.71 7.40 -2.38 -0.02 3.69 16 33 H 0.08 2.98 8.08 -2.39 -0.02 2.96 16 34 H 0.11 3.21 8.14 -2.39 -0.02 3.19 16 35 H 0.10 3.35 8.14 -2.39 -0.02 3.33 16 36 H 0.07 3.14 8.14 -2.39 -0.02 3.12 16 37 H 0.11 5.03 7.78 -2.91 -0.02 5.00 16 Total: -1.00 -64.27 311.31 5.93 -58.34 By element: Atomic # 1 Polarization: 20.16 SS G_CDS: 1.04 Total: 21.19 kcal Atomic # 6 Polarization: -64.12 SS G_CDS: 3.56 Total: -60.56 kcal Atomic # 7 Polarization: -53.30 SS G_CDS: 0.28 Total: -53.02 kcal Atomic # 8 Polarization: -11.79 SS G_CDS: -0.97 Total: -12.76 kcal Atomic # 14 Polarization: 44.78 SS G_CDS: 2.03 Total: 46.80 kcal Total: -64.27 5.93 -58.34 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260101727.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.678 kcal (2) G-P(sol) polarization free energy of solvation -64.272 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.594 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.929 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.342 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds