Wall clock time and date at job start Mon Mar 30 2020 05:54:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38268 * 119.94269 * 2 1 4 4 C 1.38151 * 120.05246 * 180.02562 * 3 2 1 5 5 C 1.38727 * 119.94302 * 0.02562 * 4 3 2 6 6 O 1.35906 * 120.05430 * 180.02562 * 5 4 3 7 7 C 1.42898 * 116.99685 * 354.66392 * 6 5 4 8 8 H 1.09000 * 110.05916 * 325.54700 * 7 6 5 9 9 C 1.54271 * 110.03228 * 86.96099 * 7 6 5 10 10 C 1.54888 * 104.19632 * 142.89231 * 9 7 6 11 11 C 1.54893 * 102.75101 * 322.06219 * 10 9 7 12 12 H 1.09009 * 110.59523 * 279.21044 * 11 10 9 13 13 C 1.50695 * 110.48917 * 156.62007 * 11 10 9 14 14 H 1.07999 * 120.00098 * 274.46536 * 13 11 10 15 15 C 1.37874 * 119.99974 * 94.74605 * 13 11 10 16 16 N 1.31515 * 119.99918 * 181.39009 * 15 13 11 17 17 Si 1.86801 * 120.00159 * 1.38067 * 15 13 11 18 18 H 1.48500 * 109.46780 * 84.72040 * 17 15 13 19 19 H 1.48501 * 109.47320 * 204.71940 * 17 15 13 20 20 H 1.48501 * 109.47259 * 324.72157 * 17 15 13 21 21 C 1.53879 * 110.03387 * 204.12735 * 7 6 5 22 22 C 1.38733 * 119.89104 * 0.27340 * 5 4 3 23 23 C 1.38144 * 119.94392 * 359.47050 * 22 5 4 24 24 H 1.09001 * 109.47080 * 89.99687 * 1 2 3 25 25 H 1.08998 * 109.46953 * 209.99713 * 1 2 3 26 26 H 1.09004 * 109.47027 * 329.99525 * 1 2 3 27 27 H 1.07997 * 119.97278 * 0.02716 * 3 2 1 28 28 H 1.08004 * 120.02263 * 179.97438 * 4 3 2 29 29 H 1.08994 * 110.49357 * 261.57260 * 9 7 6 30 30 H 1.09002 * 110.48607 * 24.22054 * 9 7 6 31 31 H 1.09002 * 110.75971 * 203.74712 * 10 9 7 32 32 H 1.08991 * 110.75660 * 80.37455 * 10 9 7 33 33 H 0.97005 * 119.99976 * 179.97438 * 16 15 13 34 34 H 1.08997 * 110.02828 * 121.43118 * 21 7 6 35 35 H 1.08999 * 110.02763 * 0.02562 * 21 7 6 36 36 H 1.08000 * 120.02735 * 179.72450 * 22 5 4 37 37 H 1.07992 * 119.97410 * 180.27457 * 23 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1971 1.1981 0.0000 4 6 3.5786 1.2008 -0.0005 5 6 4.2734 0.0000 -0.0016 6 8 5.6324 0.0000 -0.0016 7 6 6.2812 1.2678 -0.1189 8 1 5.6986 1.9278 -0.7616 9 6 6.4526 1.9047 1.2757 10 6 7.8310 2.6077 1.2054 11 6 8.6779 1.6166 0.3689 12 1 9.0418 0.8009 0.9937 13 6 9.8308 2.3314 -0.2874 14 1 9.6898 2.8245 -1.2379 15 6 11.0670 2.3511 0.3227 16 7 12.0661 2.9980 -0.2366 17 14 11.3228 1.4591 1.9439 18 1 11.6274 0.0299 1.6798 19 1 12.4555 2.0794 2.6769 20 1 10.0887 1.5588 2.7639 21 6 7.6961 1.0847 -0.6954 22 6 3.5785 -1.2008 -0.0079 23 6 2.1971 -1.1981 -0.0020 24 1 -0.3633 0.0001 -1.0277 25 1 -0.3633 -0.8900 0.5138 26 1 -0.3633 0.8900 0.5139 27 1 1.6558 2.1326 0.0004 28 1 4.1172 2.1369 -0.0010 29 1 5.6626 2.6320 1.4628 30 1 6.4555 1.1359 2.0484 31 1 8.2534 2.7305 2.2028 32 1 7.7489 3.5690 0.6985 33 1 12.9358 3.0122 0.1928 34 1 7.8000 1.6557 -1.6180 35 1 7.8876 0.0287 -0.8862 36 1 4.1172 -2.1368 -0.0132 37 1 1.6558 -2.1326 -0.0024 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260122887.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:54:47 Heat of formation + Delta-G solvation = -34.794841 kcal Electronic energy + Delta-G solvation = -17331.485241 eV Core-core repulsion = 14652.003804 eV Total energy + Delta-G solvation = -2679.481437 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.16632 -38.13062 -35.99396 -32.45609 -31.81845 -31.01205 -28.66712 -27.89297 -26.10294 -24.03190 -22.57894 -21.37880 -19.91428 -19.07678 -18.15105 -16.99696 -15.85719 -15.40963 -15.02375 -14.59013 -14.37541 -13.80284 -13.57185 -13.51796 -13.26431 -12.94845 -12.44081 -12.37552 -12.20181 -11.64235 -11.56887 -11.16679 -11.02013 -10.81194 -10.57212 -10.28466 -10.19010 -10.01016 -9.64734 -9.52249 -9.05186 -8.98119 -8.54342 -7.90894 -6.09264 -4.08172 1.35972 1.46817 3.29052 3.37245 3.39920 3.53408 3.78073 4.41591 4.79644 4.83466 4.95922 5.09101 5.14888 5.22454 5.35636 5.38735 5.46430 5.50186 5.54849 5.72458 5.77789 5.97826 6.03587 6.19815 6.25663 6.29686 6.33840 6.46936 6.51811 6.59396 6.68781 6.79734 6.82441 6.94937 7.21134 7.37515 7.70576 7.79535 8.51109 8.94893 9.54001 11.03859 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.054652 B = 0.004451 C = 0.004393 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 512.209710 B = 6289.683782 C = 6371.936161 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.139 4.139 3 C -0.081 4.081 4 C -0.207 4.207 5 C 0.137 3.863 6 O -0.308 6.308 7 C 0.078 3.922 8 H 0.068 0.932 9 C -0.148 4.148 10 C -0.120 4.120 11 C 0.016 3.984 12 H 0.036 0.964 13 C -0.509 4.509 14 H 0.074 0.926 15 C 0.070 3.930 16 N -0.901 5.901 17 Si 0.878 3.122 18 H -0.276 1.276 19 H -0.290 1.290 20 H -0.264 1.264 21 C -0.106 4.106 22 C -0.157 4.157 23 C -0.083 4.083 24 H 0.064 0.936 25 H 0.062 0.938 26 H 0.061 0.939 27 H 0.120 0.880 28 H 0.131 0.869 29 H 0.056 0.944 30 H 0.068 0.932 31 H 0.055 0.945 32 H 0.066 0.934 33 H 0.264 0.736 34 H 0.074 0.926 35 H 0.065 0.935 36 H 0.128 0.872 37 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.082 -5.452 1.707 20.879 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.139 4.139 3 C -0.099 4.099 4 C -0.226 4.226 5 C 0.091 3.909 6 O -0.222 6.222 7 C 0.023 3.977 8 H 0.086 0.914 9 C -0.186 4.186 10 C -0.158 4.158 11 C -0.003 4.003 12 H 0.054 0.946 13 C -0.547 4.547 14 H 0.092 0.908 15 C -0.132 4.132 16 N -0.539 5.539 17 Si 0.705 3.295 18 H -0.202 1.202 19 H -0.216 1.216 20 H -0.189 1.189 21 C -0.143 4.143 22 C -0.176 4.176 23 C -0.101 4.101 24 H 0.083 0.917 25 H 0.081 0.919 26 H 0.080 0.920 27 H 0.138 0.862 28 H 0.149 0.851 29 H 0.075 0.925 30 H 0.087 0.913 31 H 0.073 0.927 32 H 0.085 0.915 33 H 0.074 0.926 34 H 0.093 0.907 35 H 0.083 0.917 36 H 0.146 0.854 37 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -19.725 -5.553 1.733 20.565 hybrid contribution 0.252 -0.160 0.869 0.918 sum -19.473 -5.713 2.601 20.460 Atomic orbital electron populations 1.20676 0.91414 1.02312 1.01846 1.19755 0.95945 0.93148 1.05082 1.20810 0.93357 0.97486 0.98214 1.21386 0.95170 0.97726 1.08297 1.19149 0.83546 0.93858 0.94357 1.86220 1.15189 1.33964 1.86830 1.23472 0.94717 0.82170 0.97367 0.91377 1.22965 0.99556 0.99703 0.96340 1.22804 0.92675 0.99855 1.00501 1.19889 0.93640 0.94024 0.92722 0.94586 1.21034 0.92559 1.33646 1.07464 0.90799 1.25074 0.95941 0.94916 0.97241 1.69904 1.02008 1.42420 1.39570 0.86857 0.77880 0.80223 0.84492 1.20192 1.21626 1.18888 1.22341 0.90098 1.01679 1.00226 1.20454 0.93729 0.96482 1.06934 1.20782 0.93030 0.97528 0.98745 0.91720 0.91939 0.91954 0.86160 0.85119 0.92510 0.91324 0.92663 0.91537 0.92637 0.90707 0.91651 0.85399 0.85820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.85 10.01 36.01 0.36 -0.49 16 2 C -0.14 -1.54 5.88 -104.60 -0.62 -2.16 16 3 C -0.08 -0.96 9.69 -39.60 -0.38 -1.34 16 4 C -0.21 -2.87 8.79 -39.43 -0.35 -3.21 16 5 C 0.14 2.10 6.63 -39.22 -0.26 1.84 16 6 O -0.31 -5.39 9.70 -19.45 -0.19 -5.58 16 7 C 0.08 1.36 2.80 -25.61 -0.07 1.29 16 8 H 0.07 1.09 6.30 -51.93 -0.33 0.76 16 9 C -0.15 -2.57 6.13 -25.07 -0.15 -2.72 16 10 C -0.12 -2.46 6.31 -24.74 -0.16 -2.62 16 11 C 0.02 0.38 2.31 -90.11 -0.21 0.17 16 12 H 0.04 0.86 5.72 -51.92 -0.30 0.56 16 13 C -0.51 -14.00 8.86 -34.44 -0.31 -14.31 16 14 H 0.07 2.19 7.87 -52.49 -0.41 1.78 16 15 C 0.07 1.99 5.47 -17.82 -0.10 1.90 16 16 N -0.90 -27.32 13.96 55.43 0.77 -26.55 16 17 Si 0.88 21.52 26.92 -169.99 -4.58 16.94 16 18 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 19 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 20 H -0.26 -6.19 6.43 56.52 0.36 -5.83 16 21 C -0.11 -2.13 6.17 -25.61 -0.16 -2.29 16 22 C -0.16 -2.12 9.99 -39.43 -0.39 -2.51 16 23 C -0.08 -0.94 9.69 -39.61 -0.38 -1.33 16 24 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 25 H 0.06 0.44 8.08 -51.93 -0.42 0.02 16 26 H 0.06 0.45 8.08 -51.93 -0.42 0.03 16 27 H 0.12 1.16 8.06 -52.49 -0.42 0.74 16 28 H 0.13 1.75 5.38 -52.48 -0.28 1.46 16 29 H 0.06 0.86 7.57 -51.93 -0.39 0.47 16 30 H 0.07 1.21 8.08 -51.93 -0.42 0.79 16 31 H 0.05 1.14 7.57 -51.93 -0.39 0.75 16 32 H 0.07 1.36 8.05 -51.93 -0.42 0.94 16 33 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 34 H 0.07 1.51 7.71 -51.93 -0.40 1.10 16 35 H 0.06 1.30 7.95 -51.93 -0.41 0.89 16 36 H 0.13 1.58 8.06 -52.49 -0.42 1.16 16 37 H 0.12 1.09 8.06 -52.49 -0.42 0.66 16 LS Contribution 298.97 15.07 4.51 4.51 Total: -1.00 -29.81 298.97 -8.12 -37.93 By element: Atomic # 1 Polarization: 5.99 SS G_CDS: -5.46 Total: 0.53 kcal Atomic # 6 Polarization: -24.60 SS G_CDS: -3.17 Total: -27.77 kcal Atomic # 7 Polarization: -27.32 SS G_CDS: 0.77 Total: -26.55 kcal Atomic # 8 Polarization: -5.39 SS G_CDS: -0.19 Total: -5.58 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -4.58 Total: 16.94 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -29.81 -8.12 -37.93 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260122887.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.132 kcal (2) G-P(sol) polarization free energy of solvation -29.808 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.676 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.927 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds