Wall clock time and date at job start Mon Mar 30 2020 05:33:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.37971 * 119.72919 * 2 1 4 4 C 1.38218 * 119.77759 * 179.97438 * 3 2 1 5 5 C 1.37981 * 119.77162 * 0.11936 * 4 3 2 6 6 C 1.38865 * 120.53983 * 0.02562 * 5 4 3 7 7 C 1.37711 * 119.68967 * 359.79806 * 6 5 4 8 8 C 1.50626 * 122.56897 * 180.34030 * 7 6 5 9 9 C 1.52732 * 110.59293 * 342.48612 * 8 7 6 10 10 C 1.53329 * 108.38610 * 51.03036 * 9 8 7 11 11 H 1.09000 * 109.68452 * 49.79161 * 10 9 8 12 12 C 1.53006 * 109.68099 * 170.35018 * 10 9 8 13 13 C 1.50636 * 117.74722 * 179.74571 * 6 5 4 14 14 O 1.42893 * 109.25913 * 282.73702 * 13 6 5 15 15 C 1.50702 * 109.22344 * 42.19224 * 13 6 5 16 16 H 1.08000 * 119.99696 * 235.39188 * 15 13 6 17 17 C 1.37879 * 119.99861 * 55.39718 * 15 13 6 18 18 N 1.31512 * 120.00197 * 4.92696 * 17 15 13 19 19 Si 1.86802 * 119.99472 * 184.93349 * 17 15 13 20 20 H 1.48499 * 109.46854 * 90.00113 * 19 17 15 21 21 H 1.48502 * 109.46753 * 209.99515 * 19 17 15 22 22 H 1.48494 * 109.47469 * 329.99456 * 19 17 15 23 23 H 1.08993 * 109.47162 * 269.97334 * 1 2 3 24 24 H 1.09000 * 109.47278 * 29.98020 * 1 2 3 25 25 H 1.09009 * 109.47331 * 149.97811 * 1 2 3 26 26 H 1.08002 * 120.11390 * 359.96350 * 3 2 1 27 27 H 1.08001 * 120.11898 * 180.14974 * 4 3 2 28 28 H 1.07998 * 119.72796 * 179.97438 * 5 4 3 29 29 H 1.08994 * 109.25887 * 222.19339 * 8 7 6 30 30 H 1.09005 * 109.22242 * 102.74460 * 8 7 6 31 31 H 1.09005 * 109.67985 * 291.30858 * 9 8 7 32 32 H 1.08997 * 109.71533 * 170.77756 * 9 8 7 33 33 H 1.09004 * 109.46974 * 178.91322 * 12 10 9 34 34 H 1.08996 * 109.47389 * 298.90958 * 12 10 9 35 35 H 1.08996 * 109.47185 * 58.91751 * 12 10 9 36 36 H 0.96705 * 114.00360 * 58.90610 * 14 13 6 37 37 H 0.96994 * 120.00135 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1911 1.1981 0.0000 4 6 3.5733 1.1993 0.0005 5 6 4.2595 0.0022 -0.0014 6 6 3.5727 -1.2048 -0.0045 7 6 2.1956 -1.2060 -0.0013 8 6 1.3859 -2.4761 0.0032 9 6 2.2458 -3.6629 -0.4265 10 6 3.5267 -3.6624 0.4163 11 1 3.2716 -3.5693 1.4719 12 6 4.2968 -4.9640 0.1842 13 6 4.3846 -2.4736 -0.0124 14 8 4.8850 -2.7047 -1.3307 15 6 5.5430 -2.3274 0.9404 16 1 6.5526 -2.4858 0.5912 17 6 5.3138 -1.9916 2.2579 18 7 4.0816 -1.8938 2.7068 19 14 6.7538 -1.6754 3.4050 20 1 7.1156 -0.2358 3.3600 21 1 6.3729 -2.0469 4.7915 22 1 7.9174 -2.4920 2.9758 23 1 -0.3633 -0.0005 1.0276 24 1 -0.3634 0.8901 -0.5135 25 1 -0.3634 -0.8898 -0.5142 26 1 1.6486 2.1319 -0.0006 27 1 4.1145 2.1339 0.0030 28 1 5.3394 0.0039 -0.0014 29 1 0.5482 -2.3709 -0.6862 30 1 1.0038 -2.6545 1.0084 31 1 2.5008 -3.5683 -1.4821 32 1 1.6990 -4.5915 -0.2629 33 1 5.2160 -4.9516 0.7699 34 1 3.6817 -5.8098 0.4912 35 1 4.5415 -5.0576 -0.8738 36 1 5.4402 -1.9900 -1.6716 37 1 3.9204 -1.6579 3.6337 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260129233.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:33:43 Heat of formation + Delta-G solvation = -58.745010 kcal Electronic energy + Delta-G solvation = -19042.590878 eV Core-core repulsion = 16362.070884 eV Total energy + Delta-G solvation = -2680.519994 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.07113 -38.18702 -35.81496 -34.68464 -33.29515 -32.10204 -30.12886 -27.83133 -27.25550 -25.93785 -23.68011 -22.18660 -21.28985 -19.99435 -18.72324 -17.39797 -16.83892 -16.38143 -16.00579 -15.59799 -14.98931 -14.74395 -14.72979 -14.00348 -13.90640 -13.74201 -13.54906 -13.13866 -12.99020 -12.90087 -12.80283 -12.48600 -12.37470 -12.23059 -12.03729 -11.94790 -11.65033 -11.30815 -11.16622 -10.84639 -10.26476 -10.12464 -9.09732 -9.06963 -8.02518 -6.19052 0.81473 0.89817 1.37242 1.41454 1.47711 2.42206 3.15502 3.23677 3.98858 4.15554 4.18483 4.29948 4.32040 4.41158 4.60426 4.64039 4.67941 4.80602 4.91029 4.93352 4.99449 5.04417 5.10456 5.15949 5.26598 5.29028 5.36323 5.51019 5.59870 5.64016 5.73028 5.77660 5.88717 5.98740 6.08561 6.29740 6.44798 6.53843 6.70555 7.28568 7.56249 8.94497 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.019646 B = 0.012070 C = 0.009358 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1424.851652 B = 2319.263145 C = 2991.431225 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.113 4.113 3 C -0.146 4.146 4 C -0.145 4.145 5 C -0.122 4.122 6 C -0.041 4.041 7 C -0.088 4.088 8 C -0.067 4.067 9 C -0.110 4.110 10 C -0.073 4.073 11 H 0.077 0.923 12 C -0.117 4.117 13 C 0.284 3.716 14 O -0.580 6.580 15 C -0.552 4.552 16 H 0.049 0.951 17 C 0.044 3.956 18 N -0.881 5.881 19 Si 0.932 3.068 20 H -0.280 1.280 21 H -0.286 1.286 22 H -0.274 1.274 23 H 0.066 0.934 24 H 0.077 0.923 25 H 0.074 0.926 26 H 0.135 0.865 27 H 0.125 0.875 28 H 0.102 0.898 29 H 0.085 0.915 30 H 0.061 0.939 31 H 0.052 0.948 32 H 0.068 0.932 33 H 0.034 0.966 34 H 0.048 0.952 35 H 0.045 0.955 36 H 0.366 0.634 37 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.950 2.453 -4.549 7.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.113 4.113 3 C -0.163 4.163 4 C -0.163 4.163 5 C -0.141 4.141 6 C -0.041 4.041 7 C -0.088 4.088 8 C -0.104 4.104 9 C -0.148 4.148 10 C -0.092 4.092 11 H 0.095 0.905 12 C -0.174 4.174 13 C 0.245 3.755 14 O -0.386 6.386 15 C -0.590 4.590 16 H 0.067 0.933 17 C -0.159 4.159 18 N -0.518 5.518 19 Si 0.759 3.241 20 H -0.206 1.206 21 H -0.212 1.212 22 H -0.199 1.199 23 H 0.085 0.915 24 H 0.096 0.904 25 H 0.092 0.908 26 H 0.153 0.847 27 H 0.143 0.857 28 H 0.120 0.880 29 H 0.103 0.897 30 H 0.079 0.921 31 H 0.071 0.929 32 H 0.087 0.913 33 H 0.053 0.947 34 H 0.067 0.933 35 H 0.065 0.935 36 H 0.211 0.789 37 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -6.407 1.926 -4.295 7.950 hybrid contribution 1.585 0.839 1.095 2.102 sum -4.821 2.765 -3.200 6.413 Atomic orbital electron populations 1.20802 0.89771 1.03341 1.02259 1.20185 0.97213 0.92596 1.01321 1.20983 0.94030 0.97685 1.03645 1.21163 0.95089 0.97584 1.02509 1.21128 0.99386 0.92801 1.00758 1.20477 0.93213 0.96503 0.93956 1.19683 0.93318 0.95077 1.00720 1.20396 0.97216 0.91807 1.00937 1.21607 0.96294 0.97564 0.99315 1.21060 0.93754 0.94245 1.00121 0.90508 1.21459 0.99289 0.96308 1.00377 1.17681 0.90095 0.88770 0.78963 1.86335 1.70323 1.48204 1.33700 1.21734 0.93045 1.48866 0.95312 0.93326 1.25303 0.96996 0.94741 0.98832 1.70000 1.19540 1.46755 1.15473 0.85963 0.81023 0.78269 0.78818 1.20614 1.21224 1.19932 0.91517 0.90402 0.90772 0.84745 0.85656 0.88010 0.89651 0.92081 0.92910 0.91330 0.94661 0.93270 0.93549 0.78851 0.93305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.90 9.52 71.23 0.68 -2.22 16 2 C -0.11 -4.18 5.89 -19.78 -0.12 -4.29 16 3 C -0.15 -5.21 9.68 22.20 0.22 -4.99 16 4 C -0.15 -5.66 10.05 22.20 0.22 -5.43 16 5 C -0.12 -5.49 8.70 22.36 0.19 -5.30 16 6 C -0.04 -1.88 3.65 -19.86 -0.07 -1.96 16 7 C -0.09 -3.71 5.74 -19.86 -0.11 -3.82 16 8 C -0.07 -2.50 4.97 29.74 0.15 -2.35 16 9 C -0.11 -4.29 5.27 30.62 0.16 -4.13 16 10 C -0.07 -3.34 1.91 -10.77 -0.02 -3.36 16 11 H 0.08 3.98 6.15 -2.39 -0.01 3.97 16 12 C -0.12 -4.98 8.81 71.98 0.63 -4.34 16 13 C 0.28 13.61 0.32 -12.39 0.00 13.61 16 14 O -0.58 -26.29 11.36 -148.98 -1.69 -27.98 16 15 C -0.55 -28.77 6.16 25.60 0.16 -28.61 16 16 H 0.05 2.60 7.82 -2.91 -0.02 2.58 16 17 C 0.04 2.29 4.83 84.66 0.41 2.70 16 18 N -0.88 -47.41 10.52 21.45 0.23 -47.18 16 19 Si 0.93 42.65 29.54 68.60 2.03 44.68 16 20 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 21 H -0.29 -13.02 7.11 99.48 0.71 -12.31 16 22 H -0.27 -12.45 7.11 99.48 0.71 -11.75 16 23 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 24 H 0.08 1.76 8.08 -2.39 -0.02 1.74 16 25 H 0.07 1.87 5.94 -2.38 -0.01 1.86 16 26 H 0.13 3.86 8.06 -2.91 -0.02 3.84 16 27 H 0.13 4.15 8.06 -2.91 -0.02 4.12 16 28 H 0.10 4.67 7.27 -2.91 -0.02 4.65 16 29 H 0.09 2.64 6.28 -2.39 -0.02 2.63 16 30 H 0.06 2.35 8.14 -2.38 -0.02 2.33 16 31 H 0.05 2.09 7.66 -2.38 -0.02 2.08 16 32 H 0.07 2.32 8.13 -2.39 -0.02 2.30 16 33 H 0.03 1.60 7.52 -2.39 -0.02 1.58 16 34 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 35 H 0.05 1.92 7.47 -2.39 -0.02 1.90 16 36 H 0.37 14.73 8.93 -74.05 -0.66 14.07 16 37 H 0.26 13.60 8.31 -92.71 -0.77 12.83 16 Total: -1.00 -58.48 288.32 3.46 -55.02 By element: Atomic # 1 Polarization: 29.56 SS G_CDS: 0.40 Total: 29.97 kcal Atomic # 6 Polarization: -57.00 SS G_CDS: 2.49 Total: -54.51 kcal Atomic # 7 Polarization: -47.41 SS G_CDS: 0.23 Total: -47.18 kcal Atomic # 8 Polarization: -26.29 SS G_CDS: -1.69 Total: -27.98 kcal Atomic # 14 Polarization: 42.65 SS G_CDS: 2.03 Total: 44.68 kcal Total: -58.48 3.46 -55.02 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260129233.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.723 kcal (2) G-P(sol) polarization free energy of solvation -58.479 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.201 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.456 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.022 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.745 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds