Wall clock time and date at job start Mon Mar 30 2020 05:33:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.37972 * 119.72691 * 2 1 4 4 C 1.38225 * 119.77275 * 179.97438 * 3 2 1 5 5 C 1.37981 * 119.76802 * 359.86941 * 4 3 2 6 6 C 1.38863 * 120.54648 * 0.04726 * 5 4 3 7 7 C 1.37715 * 119.68233 * 0.16750 * 6 5 4 8 8 C 1.50630 * 122.55824 * 179.32562 * 7 6 5 9 9 C 1.52727 * 110.58826 * 17.78922 * 8 7 6 10 10 C 1.53325 * 108.39211 * 308.89027 * 9 8 7 11 11 H 1.09000 * 109.68526 * 310.14880 * 10 9 8 12 12 C 1.53005 * 109.70969 * 189.61182 * 10 9 8 13 13 C 1.50628 * 117.75831 * 180.23340 * 6 5 4 14 14 O 1.42899 * 109.25768 * 77.43768 * 13 6 5 15 15 C 1.50702 * 109.25295 * 318.00194 * 13 6 5 16 16 H 1.08000 * 119.99670 * 120.23695 * 15 13 6 17 17 C 1.37872 * 120.00274 * 300.23727 * 15 13 6 18 18 N 1.31512 * 119.99950 * 6.39652 * 17 15 13 19 19 Si 1.86803 * 119.99778 * 186.40455 * 17 15 13 20 20 H 1.48497 * 109.47716 * 59.99687 * 19 17 15 21 21 H 1.48508 * 109.47006 * 179.97438 * 19 17 15 22 22 H 1.48500 * 109.46905 * 299.99096 * 19 17 15 23 23 H 1.08992 * 109.47080 * 90.00614 * 1 2 3 24 24 H 1.08999 * 109.47390 * 210.00640 * 1 2 3 25 25 H 1.09003 * 109.47176 * 330.00225 * 1 2 3 26 26 H 1.08003 * 120.11501 * 359.92457 * 3 2 1 27 27 H 1.07998 * 120.11771 * 179.85839 * 4 3 2 28 28 H 1.08001 * 119.72477 * 180.02562 * 5 4 3 29 29 H 1.08994 * 109.25225 * 138.07675 * 8 7 6 30 30 H 1.09000 * 109.25093 * 257.54466 * 8 7 6 31 31 H 1.08998 * 109.68218 * 189.16553 * 9 8 7 32 32 H 1.08998 * 109.67385 * 68.60979 * 9 8 7 33 33 H 1.09002 * 109.47488 * 300.53943 * 12 10 9 34 34 H 1.09002 * 109.46627 * 60.53849 * 12 10 9 35 35 H 1.08997 * 109.47066 * 180.53803 * 12 10 9 36 36 H 0.96702 * 113.99425 * 301.09763 * 14 13 6 37 37 H 0.97007 * 120.00147 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1911 1.1981 0.0000 4 6 3.5734 1.1993 0.0005 5 6 4.2594 0.0021 0.0038 6 6 3.5727 -1.2049 0.0056 7 6 2.1955 -1.2059 0.0005 8 6 1.3859 -2.4760 -0.0129 9 6 2.2436 -3.6642 0.4173 10 6 3.5282 -3.6619 -0.4198 11 1 3.2777 -3.5670 -1.4764 12 6 4.2978 -4.9637 -0.1877 13 6 4.3842 -2.4738 0.0145 14 8 4.8792 -2.7073 1.3346 15 6 5.5471 -2.3266 -0.9326 16 1 6.5583 -2.4164 -0.5642 17 6 5.3201 -2.0773 -2.2695 18 7 4.0985 -1.8430 -2.6965 19 14 6.7478 -2.0724 -3.4742 20 1 7.4084 -3.4023 -3.4644 21 1 6.2421 -1.7815 -4.8399 22 1 7.7277 -1.0300 -3.0763 23 1 -0.3633 -0.0001 -1.0276 24 1 -0.3634 -0.8899 0.5139 25 1 -0.3634 0.8900 0.5138 26 1 1.6486 2.1320 -0.0012 27 1 4.1146 2.1339 -0.0018 28 1 5.3394 0.0037 0.0046 29 1 0.5446 -2.3732 0.6725 30 1 1.0092 -2.6515 -1.0205 31 1 1.6970 -4.5920 0.2481 32 1 2.4941 -3.5725 1.4741 33 1 4.5466 -5.0551 0.8697 34 1 3.6805 -5.8096 -0.4902 35 1 5.2147 -4.9538 -0.7770 36 1 5.4330 -1.9933 1.6789 37 1 3.9387 -1.6680 -3.6372 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260129234.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:33:45 Heat of formation + Delta-G solvation = -43.580070 kcal Electronic energy + Delta-G solvation = -19033.088270 eV Core-core repulsion = 16353.225877 eV Total energy + Delta-G solvation = -2679.862393 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.43380 -36.53259 -34.16607 -32.81466 -31.66386 -30.48303 -28.46477 -26.11650 -25.72456 -24.18690 -22.00708 -20.55632 -19.67286 -18.29940 -16.83029 -15.70481 -15.10147 -14.64746 -14.38047 -14.00833 -13.32721 -13.12023 -13.08797 -12.37210 -12.28355 -12.18468 -11.89390 -11.70481 -11.44695 -11.11159 -10.99918 -10.87902 -10.72405 -10.55423 -10.36001 -10.13289 -10.02139 -9.57454 -9.48215 -9.03211 -8.45121 -8.31224 -7.50741 -7.43418 -6.05831 -4.18268 2.42549 2.51033 3.25919 3.31898 3.34457 4.35114 4.79894 5.18796 5.54464 5.60548 5.73048 5.82551 5.85463 5.96388 6.00968 6.12452 6.16096 6.28706 6.34297 6.47141 6.55351 6.56518 6.67078 6.70155 6.91381 6.92259 7.00900 7.07518 7.21810 7.34675 7.42040 7.49336 7.63087 7.73070 7.81501 8.06340 8.13810 8.26138 8.63061 9.10880 9.50532 10.93764 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.020291 B = 0.011671 C = 0.009303 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1379.578789 B = 2398.617215 C = 3008.993005 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.107 4.107 3 C -0.143 4.143 4 C -0.140 4.140 5 C -0.094 4.094 6 C -0.016 4.016 7 C -0.065 4.065 8 C -0.070 4.070 9 C -0.116 4.116 10 C -0.068 4.068 11 H 0.101 0.899 12 C -0.125 4.125 13 C 0.289 3.711 14 O -0.574 6.574 15 C -0.546 4.546 16 H 0.062 0.938 17 C 0.076 3.924 18 N -0.866 5.866 19 Si 0.887 3.113 20 H -0.276 1.276 21 H -0.288 1.288 22 H -0.277 1.277 23 H 0.060 0.940 24 H 0.062 0.938 25 H 0.052 0.948 26 H 0.101 0.899 27 H 0.102 0.898 28 H 0.115 0.885 29 H 0.056 0.944 30 H 0.067 0.933 31 H 0.046 0.954 32 H 0.058 0.942 33 H 0.046 0.954 34 H 0.025 0.975 35 H 0.056 0.944 36 H 0.357 0.643 37 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.366 1.530 4.121 6.196 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.107 4.107 3 C -0.161 4.161 4 C -0.158 4.158 5 C -0.112 4.112 6 C -0.017 4.017 7 C -0.065 4.065 8 C -0.107 4.107 9 C -0.154 4.154 10 C -0.086 4.086 11 H 0.119 0.881 12 C -0.182 4.182 13 C 0.249 3.751 14 O -0.379 6.379 15 C -0.584 4.584 16 H 0.080 0.920 17 C -0.129 4.129 18 N -0.501 5.501 19 Si 0.715 3.285 20 H -0.202 1.202 21 H -0.213 1.213 22 H -0.203 1.203 23 H 0.079 0.921 24 H 0.081 0.919 25 H 0.071 0.929 26 H 0.119 0.881 27 H 0.120 0.880 28 H 0.133 0.867 29 H 0.074 0.926 30 H 0.085 0.915 31 H 0.065 0.935 32 H 0.077 0.923 33 H 0.065 0.935 34 H 0.044 0.956 35 H 0.075 0.925 36 H 0.202 0.798 37 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -4.836 1.010 3.850 6.263 hybrid contribution 1.076 0.829 -1.057 1.722 sum -3.760 1.840 2.792 5.031 Atomic orbital electron populations 1.20757 0.92888 1.01509 1.01358 1.19669 0.94796 0.93230 1.03048 1.20547 0.94272 0.96266 1.05024 1.20843 0.94147 0.97465 1.03388 1.21062 0.99742 0.91742 0.98666 1.20477 0.92171 0.96848 0.92196 1.19322 0.93544 0.93217 1.00419 1.20385 0.96814 0.92944 1.00581 1.21668 0.97222 0.96072 1.00416 1.21086 0.92320 0.94148 1.01092 0.88146 1.21546 0.99935 0.95806 1.00913 1.17686 0.90400 0.87749 0.79227 1.86385 1.70271 1.47501 1.33717 1.21531 0.92603 1.51076 0.93146 0.91967 1.24855 0.95515 0.94295 0.98203 1.69929 1.19273 1.45393 1.15517 0.86739 0.82843 0.78614 0.80345 1.20187 1.21319 1.20303 0.92141 0.91881 0.92859 0.88066 0.87977 0.86716 0.92559 0.91506 0.93536 0.92327 0.93507 0.95554 0.92511 0.79829 0.92732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.71 9.52 36.01 0.34 -1.36 16 2 C -0.11 -2.12 5.89 -104.49 -0.61 -2.74 16 3 C -0.14 -2.76 9.68 -39.68 -0.38 -3.14 16 4 C -0.14 -2.83 10.05 -39.68 -0.40 -3.23 16 5 C -0.09 -2.10 8.84 -39.44 -0.35 -2.45 16 6 C -0.02 -0.37 3.60 -104.62 -0.38 -0.75 16 7 C -0.06 -1.41 5.74 -104.62 -0.60 -2.01 16 8 C -0.07 -1.38 4.98 -28.06 -0.14 -1.52 16 9 C -0.12 -2.34 5.27 -26.70 -0.14 -2.48 16 10 C -0.07 -1.55 1.89 -90.58 -0.17 -1.72 16 11 H 0.10 2.56 6.21 -51.93 -0.32 2.24 16 12 C -0.12 -2.65 8.81 37.16 0.33 -2.33 16 13 C 0.29 6.82 0.33 -93.09 -0.03 6.79 16 14 O -0.57 -12.82 11.35 -35.23 -0.40 -13.22 16 15 C -0.55 -13.89 6.10 -34.44 -0.21 -14.10 16 16 H 0.06 1.60 7.82 -52.49 -0.41 1.19 16 17 C 0.08 1.96 4.93 -17.82 -0.09 1.87 16 18 N -0.87 -22.99 10.59 55.43 0.59 -22.40 16 19 Si 0.89 20.51 29.54 -169.99 -5.02 15.49 16 20 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 21 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 22 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 23 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 24 H 0.06 0.92 5.95 -51.93 -0.31 0.61 16 25 H 0.05 0.73 8.08 -51.93 -0.42 0.31 16 26 H 0.10 1.67 8.06 -52.48 -0.42 1.25 16 27 H 0.10 1.79 8.06 -52.49 -0.42 1.36 16 28 H 0.11 2.56 7.26 -52.49 -0.38 2.18 16 29 H 0.06 0.96 6.27 -51.93 -0.33 0.63 16 30 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 31 H 0.05 0.84 8.13 -51.93 -0.42 0.41 16 32 H 0.06 1.20 7.66 -51.93 -0.40 0.80 16 33 H 0.05 0.97 7.45 -51.93 -0.39 0.59 16 34 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.06 1.27 7.53 -51.93 -0.39 0.88 16 36 H 0.36 7.00 8.94 45.56 0.41 7.40 16 37 H 0.26 6.87 8.31 -40.82 -0.34 6.53 16 LS Contribution 288.55 15.07 4.35 4.35 Total: -1.00 -27.43 288.55 -7.93 -35.36 By element: Atomic # 1 Polarization: 14.19 SS G_CDS: -4.61 Total: 9.59 kcal Atomic # 6 Polarization: -26.32 SS G_CDS: -2.83 Total: -29.16 kcal Atomic # 7 Polarization: -22.99 SS G_CDS: 0.59 Total: -22.40 kcal Atomic # 8 Polarization: -12.82 SS G_CDS: -0.40 Total: -13.22 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -5.02 Total: 15.49 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -27.43 -7.93 -35.36 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260129234.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.222 kcal (2) G-P(sol) polarization free energy of solvation -27.431 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.653 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.927 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.358 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds