Wall clock time and date at job start Mon Mar 30 2020 05:33:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.37972 * 119.72691 * 2 1 4 4 C 1.38225 * 119.77275 * 179.97438 * 3 2 1 5 5 C 1.37981 * 119.76802 * 359.86941 * 4 3 2 6 6 C 1.38863 * 120.54648 * 0.04726 * 5 4 3 7 7 C 1.37715 * 119.68233 * 0.16750 * 6 5 4 8 8 C 1.50630 * 122.55824 * 179.32562 * 7 6 5 9 9 C 1.52727 * 110.58826 * 17.78922 * 8 7 6 10 10 C 1.53325 * 108.39211 * 308.89027 * 9 8 7 11 11 H 1.09000 * 109.68526 * 310.14880 * 10 9 8 12 12 C 1.53005 * 109.70969 * 189.61182 * 10 9 8 13 13 C 1.50628 * 117.75831 * 180.23340 * 6 5 4 14 14 O 1.42899 * 109.25768 * 77.43768 * 13 6 5 15 15 C 1.50702 * 109.25295 * 318.00194 * 13 6 5 16 16 H 1.08000 * 119.99670 * 120.23695 * 15 13 6 17 17 C 1.37872 * 120.00274 * 300.23727 * 15 13 6 18 18 N 1.31512 * 119.99950 * 6.39652 * 17 15 13 19 19 Si 1.86803 * 119.99778 * 186.40455 * 17 15 13 20 20 H 1.48497 * 109.47716 * 59.99687 * 19 17 15 21 21 H 1.48508 * 109.47006 * 179.97438 * 19 17 15 22 22 H 1.48500 * 109.46905 * 299.99096 * 19 17 15 23 23 H 1.08992 * 109.47080 * 90.00614 * 1 2 3 24 24 H 1.08999 * 109.47390 * 210.00640 * 1 2 3 25 25 H 1.09003 * 109.47176 * 330.00225 * 1 2 3 26 26 H 1.08003 * 120.11501 * 359.92457 * 3 2 1 27 27 H 1.07998 * 120.11771 * 179.85839 * 4 3 2 28 28 H 1.08001 * 119.72477 * 180.02562 * 5 4 3 29 29 H 1.08994 * 109.25225 * 138.07675 * 8 7 6 30 30 H 1.09000 * 109.25093 * 257.54466 * 8 7 6 31 31 H 1.08998 * 109.68218 * 189.16553 * 9 8 7 32 32 H 1.08998 * 109.67385 * 68.60979 * 9 8 7 33 33 H 1.09002 * 109.47488 * 300.53943 * 12 10 9 34 34 H 1.09002 * 109.46627 * 60.53849 * 12 10 9 35 35 H 1.08997 * 109.47066 * 180.53803 * 12 10 9 36 36 H 0.96702 * 113.99425 * 301.09763 * 14 13 6 37 37 H 0.97007 * 120.00147 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1911 1.1981 0.0000 4 6 3.5734 1.1993 0.0005 5 6 4.2594 0.0021 0.0038 6 6 3.5727 -1.2049 0.0056 7 6 2.1955 -1.2059 0.0005 8 6 1.3859 -2.4760 -0.0129 9 6 2.2436 -3.6642 0.4173 10 6 3.5282 -3.6619 -0.4198 11 1 3.2777 -3.5670 -1.4764 12 6 4.2978 -4.9637 -0.1877 13 6 4.3842 -2.4738 0.0145 14 8 4.8792 -2.7073 1.3346 15 6 5.5471 -2.3266 -0.9326 16 1 6.5583 -2.4164 -0.5642 17 6 5.3201 -2.0773 -2.2695 18 7 4.0985 -1.8430 -2.6965 19 14 6.7478 -2.0724 -3.4742 20 1 7.4084 -3.4023 -3.4644 21 1 6.2421 -1.7815 -4.8399 22 1 7.7277 -1.0300 -3.0763 23 1 -0.3633 -0.0001 -1.0276 24 1 -0.3634 -0.8899 0.5139 25 1 -0.3634 0.8900 0.5138 26 1 1.6486 2.1320 -0.0012 27 1 4.1146 2.1339 -0.0018 28 1 5.3394 0.0037 0.0046 29 1 0.5446 -2.3732 0.6725 30 1 1.0092 -2.6515 -1.0205 31 1 1.6970 -4.5920 0.2481 32 1 2.4941 -3.5725 1.4741 33 1 4.5466 -5.0551 0.8697 34 1 3.6805 -5.8096 -0.4902 35 1 5.2147 -4.9538 -0.7770 36 1 5.4330 -1.9933 1.6789 37 1 3.9387 -1.6680 -3.6372 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260129234.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:33:45 Heat of formation + Delta-G solvation = -58.582214 kcal Electronic energy + Delta-G solvation = -19033.738812 eV Core-core repulsion = 16353.225877 eV Total energy + Delta-G solvation = -2680.512935 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.05908 -38.18786 -35.81284 -34.67888 -33.29148 -32.09819 -30.12535 -27.82451 -27.24586 -25.94018 -23.66245 -22.19379 -21.28438 -20.00765 -18.71864 -17.37707 -16.82653 -16.37310 -16.00600 -15.60568 -14.97631 -14.74400 -14.73100 -13.99969 -13.92513 -13.72030 -13.55561 -13.15518 -12.93331 -12.90013 -12.80794 -12.48078 -12.39590 -12.23176 -12.02859 -11.94860 -11.64830 -11.32015 -11.19147 -10.79382 -10.30468 -10.11084 -9.08598 -9.05196 -8.01652 -6.18276 0.83808 0.92179 1.38811 1.41776 1.46667 2.42442 3.16608 3.24529 3.98552 4.15984 4.18968 4.29408 4.32660 4.42117 4.61567 4.64324 4.67450 4.80539 4.91186 4.93264 5.00343 5.04521 5.10621 5.16029 5.26831 5.28012 5.35962 5.51237 5.60927 5.62946 5.73005 5.78065 5.90189 5.99098 6.08678 6.26161 6.45885 6.55894 6.70667 7.28654 7.55474 8.94608 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.020291 B = 0.011671 C = 0.009303 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1379.578789 B = 2398.617215 C = 3008.993005 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.113 4.113 3 C -0.146 4.146 4 C -0.145 4.145 5 C -0.120 4.120 6 C -0.038 4.038 7 C -0.089 4.089 8 C -0.067 4.067 9 C -0.110 4.110 10 C -0.072 4.072 11 H 0.072 0.928 12 C -0.118 4.118 13 C 0.284 3.716 14 O -0.579 6.579 15 C -0.552 4.552 16 H 0.049 0.951 17 C 0.043 3.957 18 N -0.880 5.880 19 Si 0.933 3.067 20 H -0.277 1.277 21 H -0.287 1.287 22 H -0.277 1.277 23 H 0.066 0.934 24 H 0.073 0.927 25 H 0.077 0.923 26 H 0.134 0.866 27 H 0.125 0.875 28 H 0.100 0.900 29 H 0.085 0.915 30 H 0.060 0.940 31 H 0.069 0.931 32 H 0.053 0.947 33 H 0.047 0.953 34 H 0.049 0.951 35 H 0.035 0.965 36 H 0.366 0.634 37 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.944 2.086 4.518 7.752 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.113 4.113 3 C -0.164 4.164 4 C -0.163 4.163 5 C -0.138 4.138 6 C -0.039 4.039 7 C -0.090 4.090 8 C -0.104 4.104 9 C -0.147 4.147 10 C -0.091 4.091 11 H 0.090 0.910 12 C -0.175 4.175 13 C 0.245 3.755 14 O -0.385 6.385 15 C -0.590 4.590 16 H 0.067 0.933 17 C -0.160 4.160 18 N -0.517 5.517 19 Si 0.760 3.240 20 H -0.202 1.202 21 H -0.213 1.213 22 H -0.202 1.202 23 H 0.084 0.916 24 H 0.092 0.908 25 H 0.096 0.904 26 H 0.152 0.848 27 H 0.143 0.857 28 H 0.118 0.882 29 H 0.104 0.896 30 H 0.078 0.922 31 H 0.087 0.913 32 H 0.072 0.928 33 H 0.066 0.934 34 H 0.068 0.932 35 H 0.054 0.946 36 H 0.212 0.788 37 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -6.403 1.566 4.257 7.847 hybrid contribution 1.590 0.692 -1.139 2.074 sum -4.813 2.258 3.118 6.164 Atomic orbital electron populations 1.20799 0.89825 1.03308 1.02223 1.20169 0.97165 0.92615 1.01362 1.20970 0.94035 0.97650 1.03782 1.21149 0.95069 0.97556 1.02517 1.21085 0.99259 0.92802 1.00638 1.20479 0.93154 0.96530 0.93703 1.19670 0.93335 0.95036 1.00916 1.20395 0.97250 0.91826 1.00897 1.21600 0.96174 0.97590 0.99374 1.21007 0.93869 0.94344 0.99846 0.90994 1.21471 0.99280 0.96228 1.00539 1.17678 0.90119 0.88741 0.78941 1.86333 1.70556 1.48167 1.33435 1.21702 0.92772 1.50645 0.93914 0.93305 1.25310 0.97057 0.94374 0.99252 1.70043 1.20265 1.46216 1.15130 0.86018 0.80866 0.78369 0.78778 1.20226 1.21313 1.20213 0.91557 0.90788 0.90437 0.84826 0.85726 0.88178 0.89644 0.92154 0.91273 0.92802 0.93405 0.93207 0.94626 0.78842 0.93315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.91 9.52 71.24 0.68 -2.23 16 2 C -0.11 -4.20 5.89 -19.78 -0.12 -4.31 16 3 C -0.15 -5.28 9.68 22.20 0.22 -5.06 16 4 C -0.14 -5.67 10.05 22.21 0.22 -5.45 16 5 C -0.12 -5.39 8.84 22.36 0.20 -5.19 16 6 C -0.04 -1.75 3.60 -19.86 -0.07 -1.83 16 7 C -0.09 -3.78 5.74 -19.86 -0.11 -3.90 16 8 C -0.07 -2.51 4.98 29.74 0.15 -2.36 16 9 C -0.11 -4.26 5.27 30.61 0.16 -4.10 16 10 C -0.07 -3.27 1.89 -10.77 -0.02 -3.29 16 11 H 0.07 3.71 6.21 -2.39 -0.01 3.70 16 12 C -0.12 -4.98 8.81 71.98 0.63 -4.35 16 13 C 0.28 13.61 0.33 -12.39 0.00 13.60 16 14 O -0.58 -26.18 11.35 -148.98 -1.69 -27.87 16 15 C -0.55 -28.76 6.10 25.60 0.16 -28.61 16 16 H 0.05 2.59 7.82 -2.91 -0.02 2.57 16 17 C 0.04 2.23 4.93 84.65 0.42 2.65 16 18 N -0.88 -47.38 10.59 21.45 0.23 -47.15 16 19 Si 0.93 42.64 29.54 68.60 2.03 44.67 16 20 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 21 H -0.29 -13.06 7.11 99.48 0.71 -12.35 16 22 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 23 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 24 H 0.07 1.88 5.95 -2.39 -0.01 1.86 16 25 H 0.08 1.77 8.08 -2.39 -0.02 1.75 16 26 H 0.13 3.88 8.06 -2.91 -0.02 3.85 16 27 H 0.12 4.16 8.06 -2.91 -0.02 4.13 16 28 H 0.10 4.64 7.26 -2.91 -0.02 4.62 16 29 H 0.09 2.65 6.27 -2.39 -0.01 2.63 16 30 H 0.06 2.32 8.14 -2.39 -0.02 2.30 16 31 H 0.07 2.33 8.13 -2.39 -0.02 2.31 16 32 H 0.05 2.13 7.66 -2.39 -0.02 2.11 16 33 H 0.05 1.97 7.45 -2.39 -0.02 1.95 16 34 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 35 H 0.03 1.61 7.53 -2.39 -0.02 1.59 16 36 H 0.37 14.72 8.94 -74.06 -0.66 14.06 16 37 H 0.26 13.64 8.31 -92.70 -0.77 12.87 16 Total: -1.00 -58.41 288.55 3.47 -54.94 By element: Atomic # 1 Polarization: 29.45 SS G_CDS: 0.40 Total: 29.85 kcal Atomic # 6 Polarization: -56.93 SS G_CDS: 2.50 Total: -54.43 kcal Atomic # 7 Polarization: -47.38 SS G_CDS: 0.23 Total: -47.15 kcal Atomic # 8 Polarization: -26.18 SS G_CDS: -1.69 Total: -27.87 kcal Atomic # 14 Polarization: 42.64 SS G_CDS: 2.03 Total: 44.67 kcal Total: -58.41 3.47 -54.94 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260129234.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.645 kcal (2) G-P(sol) polarization free energy of solvation -58.407 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.052 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.937 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.582 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds