Wall clock time and date at job start Mon Mar 30 2020 05:33:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.37975 * 119.72433 * 2 1 4 4 C 1.38226 * 119.77112 * 180.02562 * 3 2 1 5 5 C 1.37970 * 119.77195 * 0.11735 * 4 3 2 6 6 C 1.38875 * 120.54372 * 359.97438 * 5 4 3 7 7 C 1.37709 * 119.68685 * 359.84698 * 6 5 4 8 8 C 1.50627 * 122.56488 * 180.30464 * 7 6 5 9 9 C 1.52734 * 110.58607 * 342.46278 * 8 7 6 10 10 C 1.53327 * 108.37742 * 51.06831 * 9 8 7 11 11 H 1.09002 * 109.68800 * 49.78069 * 10 9 8 12 12 C 1.52999 * 109.71819 * 170.32501 * 10 9 8 13 13 C 1.50635 * 117.74845 * 179.77967 * 6 5 4 14 14 O 1.42901 * 109.22055 * 42.25178 * 13 6 5 15 15 C 1.50695 * 109.25563 * 282.80064 * 13 6 5 16 16 H 1.08002 * 120.00262 * 322.75989 * 15 13 6 17 17 C 1.37877 * 120.00192 * 142.76323 * 15 13 6 18 18 N 1.31521 * 119.99669 * 15.33509 * 17 15 13 19 19 Si 1.86798 * 120.00129 * 195.34197 * 17 15 13 20 20 H 1.48501 * 109.47096 * 179.97438 * 19 17 15 21 21 H 1.48496 * 109.46876 * 299.99739 * 19 17 15 22 22 H 1.48496 * 109.47403 * 59.99804 * 19 17 15 23 23 H 1.08999 * 109.46775 * 269.96449 * 1 2 3 24 24 H 1.08990 * 109.47744 * 29.97174 * 1 2 3 25 25 H 1.09001 * 109.47122 * 149.97868 * 1 2 3 26 26 H 1.07995 * 120.11353 * 359.97438 * 3 2 1 27 27 H 1.07997 * 120.11344 * 180.08301 * 4 3 2 28 28 H 1.08001 * 119.72999 * 180.02562 * 5 4 3 29 29 H 1.09005 * 109.25464 * 222.17944 * 8 7 6 30 30 H 1.09002 * 109.22219 * 102.73088 * 8 7 6 31 31 H 1.08995 * 109.68584 * 291.34303 * 9 8 7 32 32 H 1.09004 * 109.68482 * 170.78758 * 9 8 7 33 33 H 1.08994 * 109.47636 * 178.93511 * 12 10 9 34 34 H 1.09007 * 109.46913 * 298.93134 * 12 10 9 35 35 H 1.08998 * 109.47085 * 58.92996 * 12 10 9 36 36 H 0.96704 * 113.99988 * 295.56336 * 14 13 6 37 37 H 0.96997 * 119.99965 * 3.12320 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1911 1.1982 0.0000 4 6 3.5734 1.1993 -0.0005 5 6 4.2594 0.0023 -0.0035 6 6 3.5727 -1.2048 -0.0055 7 6 2.1956 -1.2060 -0.0012 8 6 1.3860 -2.4761 0.0038 9 6 2.2456 -3.6626 -0.4274 10 6 3.5269 -3.6626 0.4147 11 1 3.2725 -3.5701 1.4705 12 6 4.2974 -4.9638 0.1824 13 6 4.3846 -2.4736 -0.0138 14 8 5.4831 -2.3351 0.8895 15 6 4.9122 -2.7168 -1.4043 16 1 4.3018 -2.4786 -2.2628 17 6 6.1741 -3.2435 -1.5804 18 7 6.7969 -3.8105 -0.5703 19 14 6.9993 -3.1517 -3.2538 20 1 8.3409 -3.7842 -3.1795 21 1 6.1688 -3.8677 -4.2551 22 1 7.1446 -1.7299 -3.6568 23 1 -0.3633 -0.0006 1.0277 24 1 -0.3634 0.8901 -0.5133 25 1 -0.3633 -0.8898 -0.5142 26 1 1.6485 2.1319 -0.0004 27 1 4.1144 2.1340 0.0008 28 1 5.3394 0.0040 -0.0035 29 1 0.5476 -2.3707 -0.6848 30 1 1.0049 -2.6548 1.0093 31 1 2.5000 -3.5674 -1.4830 32 1 1.6986 -4.5911 -0.2635 33 1 5.2165 -4.9515 0.7681 34 1 3.6824 -5.8099 0.4892 35 1 4.5420 -5.0573 -0.8757 36 1 6.1190 -1.6529 0.6338 37 1 6.3510 -3.8986 0.2866 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260129236.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:33:47 Heat of formation + Delta-G solvation = -33.569766 kcal Electronic energy + Delta-G solvation = -18911.227461 eV Core-core repulsion = 16231.799147 eV Total energy + Delta-G solvation = -2679.428314 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.80937 -37.00628 -34.69971 -32.31388 -32.05874 -30.48954 -28.55225 -26.34817 -26.10030 -23.65038 -22.39838 -20.86563 -19.93845 -18.77049 -17.01248 -16.22242 -15.24518 -14.65219 -14.61784 -13.97365 -13.68507 -13.31857 -13.01464 -12.79711 -12.54448 -12.39438 -12.01541 -11.87427 -11.59540 -11.20409 -11.00484 -10.85572 -10.78456 -10.56461 -10.35849 -10.12056 -10.08745 -9.82621 -9.53959 -9.14230 -8.34894 -8.24929 -7.94225 -7.66457 -6.13535 -4.06363 1.97819 2.08375 3.43060 3.45502 3.63637 4.36700 4.55501 5.18777 5.26943 5.36566 5.42695 5.47943 5.59167 5.68306 5.73373 5.84551 5.91553 5.98955 6.09106 6.15400 6.22627 6.43625 6.46269 6.54657 6.65377 6.67536 6.72639 6.93159 6.98394 7.04274 7.12271 7.23382 7.33166 7.61307 7.67343 7.72369 8.02867 8.41579 8.91852 9.09685 9.69066 11.12600 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.024394 B = 0.009626 C = 0.008311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1147.561606 B = 2908.126421 C = 3368.353437 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.099 4.099 3 C -0.143 4.143 4 C -0.128 4.128 5 C -0.113 4.113 6 C -0.048 4.048 7 C -0.085 4.085 8 C -0.076 4.076 9 C -0.106 4.106 10 C -0.065 4.065 11 H 0.040 0.960 12 C -0.128 4.128 13 C 0.276 3.724 14 O -0.561 6.561 15 C -0.634 4.634 16 H 0.050 0.950 17 C 0.041 3.959 18 N -0.894 5.894 19 Si 1.050 2.950 20 H -0.284 1.284 21 H -0.290 1.290 22 H -0.290 1.290 23 H 0.063 0.937 24 H 0.058 0.942 25 H 0.066 0.934 26 H 0.109 0.891 27 H 0.111 0.889 28 H 0.114 0.886 29 H 0.066 0.934 30 H 0.063 0.937 31 H 0.076 0.924 32 H 0.053 0.947 33 H 0.060 0.940 34 H 0.019 0.981 35 H 0.071 0.929 36 H 0.363 0.637 37 H 0.305 0.695 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.654 5.054 1.072 10.079 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.099 4.099 3 C -0.161 4.161 4 C -0.146 4.146 5 C -0.131 4.131 6 C -0.049 4.049 7 C -0.085 4.085 8 C -0.112 4.112 9 C -0.144 4.144 10 C -0.084 4.084 11 H 0.059 0.941 12 C -0.185 4.185 13 C 0.236 3.764 14 O -0.367 6.367 15 C -0.671 4.671 16 H 0.069 0.931 17 C -0.169 4.169 18 N -0.534 5.534 19 Si 0.879 3.121 20 H -0.209 1.209 21 H -0.217 1.217 22 H -0.216 1.216 23 H 0.081 0.919 24 H 0.077 0.923 25 H 0.085 0.915 26 H 0.127 0.873 27 H 0.129 0.871 28 H 0.132 0.868 29 H 0.084 0.916 30 H 0.081 0.919 31 H 0.094 0.906 32 H 0.071 0.929 33 H 0.079 0.921 34 H 0.038 0.962 35 H 0.090 0.910 36 H 0.210 0.790 37 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -7.575 4.190 0.628 8.679 hybrid contribution -1.117 1.085 0.328 1.592 sum -8.692 5.275 0.955 10.213 Atomic orbital electron populations 1.20801 0.92249 1.02186 1.01591 1.19794 0.95284 0.93003 1.01805 1.20678 0.94249 0.96646 1.04505 1.20920 0.94238 0.97560 1.01871 1.21000 0.99754 0.91938 1.00387 1.20907 0.93009 0.97639 0.93328 1.19459 0.93244 0.93934 1.01871 1.20478 0.97304 0.92836 1.00615 1.21528 0.95283 0.95805 1.01747 1.21031 0.94395 0.96529 0.96490 0.94144 1.21792 0.99011 0.93977 1.03720 1.17851 0.82686 0.86393 0.89458 1.86302 1.37082 1.60661 1.52623 1.22014 1.04344 1.49877 0.90893 0.93142 1.25460 0.94486 0.92686 1.04281 1.70640 1.42746 1.34429 1.05545 0.83857 0.76426 0.76375 0.75423 1.20950 1.21664 1.21621 0.91877 0.92338 0.91487 0.87258 0.87084 0.86789 0.91613 0.91861 0.90575 0.92866 0.92069 0.96183 0.90998 0.78970 0.87583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.49 9.52 36.01 0.34 -1.15 16 2 C -0.10 -1.71 5.89 -104.48 -0.62 -2.33 16 3 C -0.14 -2.39 9.69 -39.68 -0.38 -2.77 16 4 C -0.13 -2.27 10.05 -39.68 -0.40 -2.66 16 5 C -0.11 -2.31 9.14 -39.44 -0.36 -2.68 16 6 C -0.05 -1.06 4.83 -104.61 -0.51 -1.57 16 7 C -0.08 -1.68 5.74 -104.62 -0.60 -2.28 16 8 C -0.08 -1.33 4.97 -28.05 -0.14 -1.47 16 9 C -0.11 -2.07 5.24 -26.70 -0.14 -2.21 16 10 C -0.07 -1.46 2.21 -90.59 -0.20 -1.66 16 11 H 0.04 0.90 8.10 -51.93 -0.42 0.48 16 12 C -0.13 -2.92 7.69 37.16 0.29 -2.63 16 13 C 0.28 6.60 0.56 -93.09 -0.05 6.55 16 14 O -0.56 -13.93 9.48 -35.23 -0.33 -14.26 16 15 C -0.63 -16.50 5.98 -34.44 -0.21 -16.71 16 16 H 0.05 1.38 7.61 -52.49 -0.40 0.98 16 17 C 0.04 1.09 4.28 -17.82 -0.08 1.02 16 18 N -0.89 -24.88 12.33 55.43 0.68 -24.19 16 19 Si 1.05 24.14 29.93 -169.99 -5.09 19.05 16 20 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 21 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 22 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 23 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 24 H 0.06 0.68 8.08 -51.93 -0.42 0.26 16 25 H 0.07 0.85 5.94 -51.93 -0.31 0.54 16 26 H 0.11 1.51 8.06 -52.49 -0.42 1.09 16 27 H 0.11 1.66 8.06 -52.49 -0.42 1.23 16 28 H 0.11 2.30 6.70 -52.49 -0.35 1.95 16 29 H 0.07 1.01 6.28 -51.93 -0.33 0.69 16 30 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 31 H 0.08 1.63 7.02 -51.93 -0.36 1.26 16 32 H 0.05 0.92 8.13 -51.93 -0.42 0.49 16 33 H 0.06 1.51 5.88 -51.93 -0.31 1.20 16 34 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 35 H 0.07 1.79 6.35 -51.93 -0.33 1.46 16 36 H 0.36 8.67 7.19 45.56 0.33 9.00 16 37 H 0.30 8.47 3.12 -40.82 -0.13 8.34 16 LS Contribution 279.78 15.07 4.22 4.22 Total: -1.00 -28.32 279.78 -7.93 -36.25 By element: Atomic # 1 Polarization: 15.84 SS G_CDS: -4.36 Total: 11.48 kcal Atomic # 6 Polarization: -29.49 SS G_CDS: -3.05 Total: -32.54 kcal Atomic # 7 Polarization: -24.88 SS G_CDS: 0.68 Total: -24.19 kcal Atomic # 8 Polarization: -13.93 SS G_CDS: -0.33 Total: -14.26 kcal Atomic # 14 Polarization: 24.14 SS G_CDS: -5.09 Total: 19.05 kcal Total LS contribution 4.22 Total: 4.22 kcal Total: -28.32 -7.93 -36.25 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260129236.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.678 kcal (2) G-P(sol) polarization free energy of solvation -28.319 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.928 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.247 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.570 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds