Wall clock time and date at job start Mon Mar 30 2020 05:33:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.37975 * 119.72433 * 2 1 4 4 C 1.38226 * 119.77112 * 180.02562 * 3 2 1 5 5 C 1.37970 * 119.77195 * 0.11735 * 4 3 2 6 6 C 1.38875 * 120.54372 * 359.97438 * 5 4 3 7 7 C 1.37709 * 119.68685 * 359.84698 * 6 5 4 8 8 C 1.50627 * 122.56488 * 180.30464 * 7 6 5 9 9 C 1.52734 * 110.58607 * 342.46278 * 8 7 6 10 10 C 1.53327 * 108.37742 * 51.06831 * 9 8 7 11 11 H 1.09002 * 109.68800 * 49.78069 * 10 9 8 12 12 C 1.52999 * 109.71819 * 170.32501 * 10 9 8 13 13 C 1.50635 * 117.74845 * 179.77967 * 6 5 4 14 14 O 1.42901 * 109.22055 * 42.25178 * 13 6 5 15 15 C 1.50695 * 109.25563 * 282.80064 * 13 6 5 16 16 H 1.08002 * 120.00262 * 322.75989 * 15 13 6 17 17 C 1.37877 * 120.00192 * 142.76323 * 15 13 6 18 18 N 1.31521 * 119.99669 * 15.33509 * 17 15 13 19 19 Si 1.86798 * 120.00129 * 195.34197 * 17 15 13 20 20 H 1.48501 * 109.47096 * 179.97438 * 19 17 15 21 21 H 1.48496 * 109.46876 * 299.99739 * 19 17 15 22 22 H 1.48496 * 109.47403 * 59.99804 * 19 17 15 23 23 H 1.08999 * 109.46775 * 269.96449 * 1 2 3 24 24 H 1.08990 * 109.47744 * 29.97174 * 1 2 3 25 25 H 1.09001 * 109.47122 * 149.97868 * 1 2 3 26 26 H 1.07995 * 120.11353 * 359.97438 * 3 2 1 27 27 H 1.07997 * 120.11344 * 180.08301 * 4 3 2 28 28 H 1.08001 * 119.72999 * 180.02562 * 5 4 3 29 29 H 1.09005 * 109.25464 * 222.17944 * 8 7 6 30 30 H 1.09002 * 109.22219 * 102.73088 * 8 7 6 31 31 H 1.08995 * 109.68584 * 291.34303 * 9 8 7 32 32 H 1.09004 * 109.68482 * 170.78758 * 9 8 7 33 33 H 1.08994 * 109.47636 * 178.93511 * 12 10 9 34 34 H 1.09007 * 109.46913 * 298.93134 * 12 10 9 35 35 H 1.08998 * 109.47085 * 58.92996 * 12 10 9 36 36 H 0.96704 * 113.99988 * 295.56336 * 14 13 6 37 37 H 0.96997 * 119.99965 * 3.12320 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1911 1.1982 0.0000 4 6 3.5734 1.1993 -0.0005 5 6 4.2594 0.0023 -0.0035 6 6 3.5727 -1.2048 -0.0055 7 6 2.1956 -1.2060 -0.0012 8 6 1.3860 -2.4761 0.0038 9 6 2.2456 -3.6626 -0.4274 10 6 3.5269 -3.6626 0.4147 11 1 3.2725 -3.5701 1.4705 12 6 4.2974 -4.9638 0.1824 13 6 4.3846 -2.4736 -0.0138 14 8 5.4831 -2.3351 0.8895 15 6 4.9122 -2.7168 -1.4043 16 1 4.3018 -2.4786 -2.2628 17 6 6.1741 -3.2435 -1.5804 18 7 6.7969 -3.8105 -0.5703 19 14 6.9993 -3.1517 -3.2538 20 1 8.3409 -3.7842 -3.1795 21 1 6.1688 -3.8677 -4.2551 22 1 7.1446 -1.7299 -3.6568 23 1 -0.3633 -0.0006 1.0277 24 1 -0.3634 0.8901 -0.5133 25 1 -0.3633 -0.8898 -0.5142 26 1 1.6485 2.1319 -0.0004 27 1 4.1144 2.1340 0.0008 28 1 5.3394 0.0040 -0.0035 29 1 0.5476 -2.3707 -0.6848 30 1 1.0049 -2.6548 1.0093 31 1 2.5000 -3.5674 -1.4830 32 1 1.6986 -4.5911 -0.2635 33 1 5.2165 -4.9515 0.7681 34 1 3.6824 -5.8099 0.4892 35 1 4.5420 -5.0573 -0.8757 36 1 6.1190 -1.6529 0.6338 37 1 6.3510 -3.8986 0.2866 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260129236.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:33:46 Heat of formation + Delta-G solvation = -49.190549 kcal Electronic energy + Delta-G solvation = -18911.904829 eV Core-core repulsion = 16231.799147 eV Total energy + Delta-G solvation = -2680.105682 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.35565 -38.65830 -36.33196 -34.00902 -33.74013 -32.12130 -30.10317 -28.03538 -27.47405 -25.49561 -23.98637 -22.44246 -21.39018 -20.54199 -18.87896 -17.87833 -16.75127 -16.24499 -16.06996 -15.77807 -15.20373 -14.94776 -14.57872 -14.47393 -14.04016 -13.87125 -13.56224 -13.21107 -13.10541 -12.77329 -12.66538 -12.50329 -12.36815 -12.22962 -12.01789 -11.98156 -11.78426 -11.62034 -11.15110 -10.85702 -10.31414 -10.14711 -9.32283 -9.25277 -8.21610 -6.14956 0.56398 0.63671 1.54514 1.58533 1.78815 2.60988 2.94802 3.27727 3.73230 3.87129 3.96236 4.13115 4.19161 4.25012 4.40522 4.47233 4.52655 4.67682 4.72843 4.78450 4.86043 4.92329 4.96208 4.99194 5.09005 5.12306 5.28854 5.33445 5.42434 5.46291 5.53102 5.70184 5.71008 5.82611 6.03548 6.06718 6.28839 6.35087 6.85108 7.13379 7.65823 9.02663 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.024394 B = 0.009626 C = 0.008311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1147.561606 B = 2908.126421 C = 3368.353437 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.099 4.099 3 C -0.139 4.139 4 C -0.128 4.128 5 C -0.140 4.140 6 C -0.084 4.084 7 C -0.105 4.105 8 C -0.072 4.072 9 C -0.100 4.100 10 C -0.068 4.068 11 H 0.038 0.962 12 C -0.117 4.117 13 C 0.267 3.733 14 O -0.573 6.573 15 C -0.629 4.629 16 H 0.031 0.969 17 C 0.002 3.998 18 N -0.920 5.920 19 Si 1.091 2.909 20 H -0.288 1.288 21 H -0.281 1.281 22 H -0.280 1.280 23 H 0.079 0.921 24 H 0.079 0.921 25 H 0.074 0.926 26 H 0.147 0.853 27 H 0.138 0.862 28 H 0.100 0.900 29 H 0.093 0.907 30 H 0.080 0.920 31 H 0.051 0.949 32 H 0.079 0.921 33 H 0.035 0.965 34 H 0.048 0.952 35 H 0.045 0.955 36 H 0.360 0.640 37 H 0.297 0.703 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.348 6.415 0.827 13.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.099 4.099 3 C -0.157 4.157 4 C -0.146 4.146 5 C -0.158 4.158 6 C -0.085 4.085 7 C -0.105 4.105 8 C -0.108 4.108 9 C -0.138 4.138 10 C -0.087 4.087 11 H 0.056 0.944 12 C -0.174 4.174 13 C 0.228 3.772 14 O -0.378 6.378 15 C -0.667 4.667 16 H 0.049 0.951 17 C -0.204 4.204 18 N -0.561 5.561 19 Si 0.916 3.084 20 H -0.213 1.213 21 H -0.206 1.206 22 H -0.206 1.206 23 H 0.098 0.902 24 H 0.098 0.902 25 H 0.092 0.908 26 H 0.165 0.835 27 H 0.156 0.844 28 H 0.118 0.882 29 H 0.111 0.889 30 H 0.098 0.902 31 H 0.070 0.930 32 H 0.097 0.903 33 H 0.054 0.946 34 H 0.067 0.933 35 H 0.064 0.936 36 H 0.207 0.793 37 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -10.288 5.557 0.381 11.699 hybrid contribution -0.337 0.724 0.439 0.911 sum -10.626 6.281 0.820 12.370 Atomic orbital electron populations 1.20874 0.88958 1.03670 1.03063 1.20276 0.97670 0.92121 0.99864 1.21164 0.93878 0.98156 1.02485 1.21240 0.95233 0.97417 1.00694 1.21061 0.99394 0.93044 1.02339 1.20819 0.94365 0.96901 0.96400 1.19791 0.92560 0.96081 1.02055 1.20517 0.97236 0.90850 1.02200 1.21462 0.94463 0.98321 0.99524 1.21060 0.95500 0.95344 0.96836 0.94386 1.21643 0.98576 0.95789 1.01433 1.17955 0.82790 0.88363 0.88118 1.86284 1.37708 1.60734 1.53083 1.22101 1.04128 1.48873 0.91632 0.95062 1.26459 0.95402 0.92238 1.06252 1.70712 1.43158 1.36379 1.05827 0.83293 0.75535 0.76812 0.72757 1.21338 1.20647 1.20634 0.90213 0.90196 0.90751 0.83529 0.84446 0.88236 0.88891 0.90178 0.93040 0.90281 0.94636 0.93288 0.93584 0.79310 0.88433 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.37 9.52 71.24 0.68 -1.69 16 2 C -0.10 -3.10 5.89 -19.78 -0.12 -3.22 16 3 C -0.14 -4.16 9.69 22.20 0.22 -3.94 16 4 C -0.13 -4.31 10.05 22.20 0.22 -4.09 16 5 C -0.14 -5.83 9.14 22.36 0.20 -5.63 16 6 C -0.08 -3.75 4.83 -19.86 -0.10 -3.85 16 7 C -0.10 -3.96 5.74 -19.86 -0.11 -4.08 16 8 C -0.07 -2.33 4.97 29.74 0.15 -2.18 16 9 C -0.10 -3.80 5.24 30.62 0.16 -3.64 16 10 C -0.07 -3.08 2.21 -10.77 -0.02 -3.11 16 11 H 0.04 1.71 8.10 -2.39 -0.02 1.69 16 12 C -0.12 -5.47 7.69 71.98 0.55 -4.91 16 13 C 0.27 13.17 0.56 -12.40 -0.01 13.16 16 14 O -0.57 -29.88 9.48 -148.98 -1.41 -31.29 16 15 C -0.63 -33.91 5.98 25.60 0.15 -33.75 16 16 H 0.03 1.76 7.61 -2.91 -0.02 1.74 16 17 C 0.00 0.11 4.28 84.65 0.36 0.47 16 18 N -0.92 -53.20 12.33 21.45 0.26 -52.94 16 19 Si 1.09 49.90 29.93 68.60 2.05 51.95 16 20 H -0.29 -13.26 7.11 99.48 0.71 -12.55 16 21 H -0.28 -12.29 7.11 99.48 0.71 -11.59 16 22 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 23 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 24 H 0.08 1.42 8.08 -2.39 -0.02 1.40 16 25 H 0.07 1.52 5.94 -2.39 -0.01 1.50 16 26 H 0.15 3.27 8.06 -2.91 -0.02 3.25 16 27 H 0.14 3.77 8.06 -2.91 -0.02 3.74 16 28 H 0.10 4.25 6.70 -2.91 -0.02 4.23 16 29 H 0.09 2.52 6.28 -2.38 -0.01 2.50 16 30 H 0.08 2.35 8.14 -2.39 -0.02 2.33 16 31 H 0.05 2.19 7.02 -2.39 -0.02 2.18 16 32 H 0.08 2.55 8.13 -2.38 -0.02 2.53 16 33 H 0.03 1.81 5.88 -2.39 -0.01 1.79 16 34 H 0.05 1.93 8.14 -2.38 -0.02 1.91 16 35 H 0.05 2.35 6.35 -2.39 -0.02 2.34 16 36 H 0.36 18.41 7.19 -74.05 -0.53 17.87 16 37 H 0.30 17.32 3.12 -92.71 -0.29 17.03 16 Total: -1.00 -63.19 279.78 4.27 -58.92 By element: Atomic # 1 Polarization: 32.78 SS G_CDS: 1.02 Total: 33.80 kcal Atomic # 6 Polarization: -62.79 SS G_CDS: 2.34 Total: -60.45 kcal Atomic # 7 Polarization: -53.20 SS G_CDS: 0.26 Total: -52.94 kcal Atomic # 8 Polarization: -29.88 SS G_CDS: -1.41 Total: -31.29 kcal Atomic # 14 Polarization: 49.90 SS G_CDS: 2.05 Total: 51.95 kcal Total: -63.19 4.27 -58.92 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260129236.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.732 kcal (2) G-P(sol) polarization free energy of solvation -63.189 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.457 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.266 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.923 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.191 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds