Wall clock time and date at job start Mon Mar 30 2020 05:50:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35894 * 117.00570 * 2 1 4 4 C 1.38751 * 120.06018 * 89.99569 * 3 2 1 5 5 C 1.50698 * 120.02539 * 0.25753 * 4 3 2 6 6 C 1.38120 * 119.94523 * 179.97438 * 4 3 2 7 7 C 1.38285 * 120.05812 * 0.02562 * 6 4 3 8 8 C 1.38249 * 120.11265 * 0.02562 * 7 6 4 9 9 C 1.50694 * 119.97312 * 179.97438 * 8 7 6 10 10 C 1.50702 * 115.54890 * 114.29914 * 9 8 7 11 11 H 1.07998 * 120.00331 * 144.56175 * 10 9 8 12 12 C 1.37878 * 119.99999 * 324.56126 * 10 9 8 13 13 N 1.31516 * 119.99961 * 351.94634 * 12 10 9 14 14 Si 1.86798 * 120.00083 * 171.93807 * 12 10 9 15 15 H 1.48504 * 109.46721 * 60.00610 * 14 12 10 16 16 H 1.48496 * 109.46971 * 179.97438 * 14 12 10 17 17 H 1.48491 * 109.47480 * 300.00190 * 14 12 10 18 18 C 1.52994 * 117.50245 * 328.62459 * 9 8 7 19 19 C 1.53003 * 117.50016 * 259.96419 * 9 8 7 20 20 C 1.38167 * 120.04940 * 359.97355 * 8 7 6 21 21 C 1.50706 * 120.02264 * 179.97438 * 20 8 7 22 22 H 1.09000 * 109.47012 * 300.00333 * 1 2 3 23 23 H 1.09000 * 109.46858 * 59.99780 * 1 2 3 24 24 H 1.09000 * 109.47316 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.47313 * 269.72317 * 5 4 3 26 26 H 1.09000 * 109.47304 * 29.72413 * 5 4 3 27 27 H 1.09005 * 109.47188 * 149.71858 * 5 4 3 28 28 H 1.08002 * 119.97373 * 179.97438 * 6 4 3 29 29 H 1.07998 * 119.94654 * 180.02562 * 7 6 4 30 30 H 0.96999 * 120.00161 * 175.15027 * 13 12 10 31 31 H 1.09000 * 117.49787 * 0.02562 * 18 9 8 32 32 H 1.08998 * 117.50031 * 145.01796 * 18 9 8 33 33 H 1.08997 * 117.50143 * 214.98349 * 19 9 8 34 34 H 1.09003 * 117.49587 * 359.97438 * 19 9 8 35 35 H 1.09000 * 109.46479 * 85.34177 * 21 20 8 36 36 H 1.09002 * 109.47234 * 205.33648 * 21 20 8 37 37 H 1.08989 * 109.47640 * 325.34199 * 21 20 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2108 0.0000 4 6 2.3616 1.8300 1.2009 5 6 2.0255 1.1578 2.5071 6 6 2.9892 3.0604 1.1981 7 6 3.3027 3.6753 -0.0002 8 6 2.9885 3.0609 -1.1981 9 6 3.3311 3.7341 -2.5021 10 6 4.3625 3.0302 -3.3457 11 1 4.2816 3.0459 -4.4225 12 6 5.4096 2.3661 -2.7427 13 7 5.5995 2.4774 -1.4461 14 14 6.5584 1.3079 -3.7674 15 1 7.2143 2.1478 -4.8016 16 1 7.5938 0.7072 -2.8886 17 1 5.7808 0.2281 -4.4266 18 6 3.3182 5.2637 -2.5322 19 6 2.2082 4.4748 -3.2311 20 6 2.3607 1.8302 -1.2006 21 6 2.0179 1.1612 -2.5069 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3634 -1.0276 0.0005 25 1 1.0290 1.4626 2.8268 26 1 2.0499 0.0760 2.3759 27 1 2.7545 1.4485 3.2635 28 1 3.2347 3.5430 2.1326 29 1 3.7939 4.6372 -0.0002 30 1 6.2918 1.9558 -1.0107 31 1 3.0624 5.7832 -1.6087 32 1 4.0556 5.7609 -3.1624 33 1 2.2157 4.4532 -4.3209 34 1 1.2216 4.4747 -2.7678 35 1 2.8806 0.5990 -2.8644 36 1 1.1781 0.4824 -2.3581 37 1 1.7472 1.9182 -3.2428 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260133655.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:50:13 Heat of formation + Delta-G solvation = 2.511264 kcal Electronic energy + Delta-G solvation = -18570.022155 eV Core-core repulsion = 15892.158432 eV Total energy + Delta-G solvation = -2677.863723 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.52383 -37.35205 -35.42814 -32.34273 -32.04068 -30.23107 -27.46561 -26.03093 -25.47694 -25.23258 -21.66960 -20.88362 -20.29820 -18.98735 -17.07615 -15.88571 -15.43130 -14.99553 -14.62531 -14.43406 -13.69271 -13.38304 -13.13665 -12.89073 -12.56058 -12.27258 -12.02681 -11.72316 -11.54867 -11.21017 -11.05759 -10.91907 -10.78675 -10.55760 -10.41387 -10.27797 -10.14319 -9.73796 -9.22194 -9.12161 -8.75287 -8.22497 -7.51184 -7.30582 -5.97809 -4.07880 2.23260 2.40948 3.30022 3.36691 3.38126 4.28852 4.39999 4.77139 4.99814 5.51997 5.57571 5.58822 5.62682 5.68471 5.81276 5.94175 5.95241 6.03767 6.16444 6.26224 6.33451 6.42624 6.46462 6.59576 6.63987 6.64769 6.80290 6.90196 6.92069 7.13591 7.23621 7.29674 7.40036 7.53660 7.71740 7.86203 7.93027 8.34617 8.36715 8.87613 9.51358 11.00017 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.020465 B = 0.009536 C = 0.008831 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1367.848489 B = 2935.433196 C = 3169.745054 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.335 6.335 3 C 0.073 3.927 4 C -0.132 4.132 5 C -0.099 4.099 6 C -0.124 4.124 7 C -0.083 4.083 8 C 0.047 3.953 9 C 0.086 3.914 10 C -0.492 4.492 11 H 0.062 0.938 12 C 0.077 3.923 13 N -0.859 5.859 14 Si 0.885 3.115 15 H -0.277 1.277 16 H -0.287 1.287 17 H -0.275 1.275 18 C -0.205 4.205 19 C -0.204 4.204 20 C -0.085 4.085 21 C -0.091 4.091 22 H 0.038 0.962 23 H 0.042 0.958 24 H 0.082 0.918 25 H 0.053 0.947 26 H 0.062 0.938 27 H 0.057 0.943 28 H 0.107 0.893 29 H 0.111 0.889 30 H 0.262 0.738 31 H 0.067 0.933 32 H 0.079 0.921 33 H 0.078 0.922 34 H 0.068 0.932 35 H 0.069 0.931 36 H 0.040 0.960 37 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.094 -1.314 4.112 9.173 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.252 6.252 3 C 0.031 3.969 4 C -0.133 4.133 5 C -0.156 4.156 6 C -0.142 4.142 7 C -0.101 4.101 8 C 0.046 3.954 9 C 0.086 3.914 10 C -0.529 4.529 11 H 0.080 0.920 12 C -0.129 4.129 13 N -0.494 5.494 14 Si 0.712 3.288 15 H -0.202 1.202 16 H -0.212 1.212 17 H -0.201 1.201 18 C -0.243 4.243 19 C -0.242 4.242 20 C -0.086 4.086 21 C -0.148 4.148 22 H 0.056 0.944 23 H 0.061 0.939 24 H 0.101 0.899 25 H 0.072 0.928 26 H 0.081 0.919 27 H 0.076 0.924 28 H 0.125 0.875 29 H 0.129 0.871 30 H 0.073 0.927 31 H 0.085 0.915 32 H 0.098 0.902 33 H 0.096 0.904 34 H 0.086 0.914 35 H 0.088 0.912 36 H 0.059 0.941 37 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -7.831 -1.516 4.274 9.049 hybrid contribution 0.725 -0.374 -0.411 0.913 sum -7.107 -1.890 3.862 8.306 Atomic orbital electron populations 1.22854 0.81004 1.01904 1.00115 1.85985 1.18479 1.26307 1.94390 1.18186 1.00465 0.86436 0.91859 1.19746 1.03844 0.95640 0.94030 1.20529 1.00257 1.00456 0.94326 1.20615 1.01200 0.94872 0.97556 1.20763 0.97782 0.99982 0.91596 1.18844 0.90560 0.92049 0.93939 1.17714 0.94163 0.88497 0.91063 1.20354 1.06637 1.33908 0.91952 0.92019 1.24931 0.96769 0.96143 0.95039 1.69994 1.32193 1.38394 1.08779 0.86763 0.80725 0.81014 0.80283 1.20244 1.21244 1.20052 1.23075 1.01341 0.99113 1.00780 1.22918 0.93318 1.09533 0.98382 1.19766 1.00331 0.94448 0.94033 1.20508 1.00255 0.99530 0.94471 0.94369 0.93940 0.89904 0.92833 0.91858 0.92435 0.87482 0.87112 0.92728 0.91462 0.90234 0.90360 0.91380 0.91190 0.94133 0.91336 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.52 10.74 101.05 1.09 1.60 16 2 O -0.33 -6.40 8.62 -19.41 -0.17 -6.57 16 3 C 0.07 1.55 5.67 -39.22 -0.22 1.32 16 4 C -0.13 -2.61 5.89 -104.48 -0.62 -3.23 16 5 C -0.10 -1.56 9.79 36.00 0.35 -1.21 16 6 C -0.12 -2.50 9.70 -39.61 -0.38 -2.88 16 7 C -0.08 -1.86 8.52 -39.56 -0.34 -2.19 16 8 C 0.05 1.10 3.29 -104.65 -0.34 0.75 16 9 C 0.09 2.06 1.07 -156.82 -0.17 1.89 16 10 C -0.49 -12.89 8.08 -34.44 -0.28 -13.17 16 11 H 0.06 1.61 7.83 -52.49 -0.41 1.20 16 12 C 0.08 2.04 5.28 -17.82 -0.09 1.95 16 13 N -0.86 -23.69 11.15 55.43 0.62 -23.07 16 14 Si 0.88 20.94 29.55 -169.99 -5.02 15.91 16 15 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 16 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 17 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 18 C -0.21 -4.52 9.43 -26.70 -0.25 -4.77 16 19 C -0.20 -4.29 9.02 -26.69 -0.24 -4.53 16 20 C -0.09 -1.93 5.87 -104.47 -0.61 -2.54 16 21 C -0.09 -1.93 8.62 36.01 0.31 -1.62 16 22 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 23 H 0.04 0.60 7.35 -51.93 -0.38 0.22 16 24 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 25 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 26 H 0.06 1.00 7.53 -51.93 -0.39 0.61 16 27 H 0.06 0.83 8.09 -51.93 -0.42 0.41 16 28 H 0.11 1.86 8.06 -52.49 -0.42 1.43 16 29 H 0.11 2.45 7.03 -52.49 -0.37 2.08 16 30 H 0.26 7.13 8.32 -40.82 -0.34 6.79 16 31 H 0.07 1.39 7.14 -51.93 -0.37 1.02 16 32 H 0.08 1.76 8.14 -51.93 -0.42 1.34 16 33 H 0.08 1.59 8.14 -51.93 -0.42 1.17 16 34 H 0.07 1.34 8.14 -51.93 -0.42 0.91 16 35 H 0.07 1.60 8.14 -51.93 -0.42 1.18 16 36 H 0.04 0.75 6.26 -51.93 -0.33 0.42 16 37 H 0.07 1.43 6.42 -51.94 -0.33 1.09 16 LS Contribution 302.63 15.07 4.56 4.56 Total: -1.00 -28.22 302.63 -7.33 -35.55 By element: Atomic # 1 Polarization: 7.75 SS G_CDS: -5.52 Total: 2.23 kcal Atomic # 6 Polarization: -26.82 SS G_CDS: -1.80 Total: -28.62 kcal Atomic # 7 Polarization: -23.69 SS G_CDS: 0.62 Total: -23.07 kcal Atomic # 8 Polarization: -6.40 SS G_CDS: -0.17 Total: -6.57 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.91 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -28.22 -7.33 -35.55 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260133655.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.066 kcal (2) G-P(sol) polarization free energy of solvation -28.223 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.843 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.555 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds