Wall clock time and date at job start Mon Mar 30 2020 05:50:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35894 * 117.00570 * 2 1 4 4 C 1.38751 * 120.06018 * 89.99569 * 3 2 1 5 5 C 1.50698 * 120.02539 * 0.25753 * 4 3 2 6 6 C 1.38120 * 119.94523 * 179.97438 * 4 3 2 7 7 C 1.38285 * 120.05812 * 0.02562 * 6 4 3 8 8 C 1.38249 * 120.11265 * 0.02562 * 7 6 4 9 9 C 1.50694 * 119.97312 * 179.97438 * 8 7 6 10 10 C 1.50702 * 115.54890 * 114.29914 * 9 8 7 11 11 H 1.07998 * 120.00331 * 144.56175 * 10 9 8 12 12 C 1.37878 * 119.99999 * 324.56126 * 10 9 8 13 13 N 1.31516 * 119.99961 * 351.94634 * 12 10 9 14 14 Si 1.86798 * 120.00083 * 171.93807 * 12 10 9 15 15 H 1.48504 * 109.46721 * 60.00610 * 14 12 10 16 16 H 1.48496 * 109.46971 * 179.97438 * 14 12 10 17 17 H 1.48491 * 109.47480 * 300.00190 * 14 12 10 18 18 C 1.52994 * 117.50245 * 328.62459 * 9 8 7 19 19 C 1.53003 * 117.50016 * 259.96419 * 9 8 7 20 20 C 1.38167 * 120.04940 * 359.97355 * 8 7 6 21 21 C 1.50706 * 120.02264 * 179.97438 * 20 8 7 22 22 H 1.09000 * 109.47012 * 300.00333 * 1 2 3 23 23 H 1.09000 * 109.46858 * 59.99780 * 1 2 3 24 24 H 1.09000 * 109.47316 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.47313 * 269.72317 * 5 4 3 26 26 H 1.09000 * 109.47304 * 29.72413 * 5 4 3 27 27 H 1.09005 * 109.47188 * 149.71858 * 5 4 3 28 28 H 1.08002 * 119.97373 * 179.97438 * 6 4 3 29 29 H 1.07998 * 119.94654 * 180.02562 * 7 6 4 30 30 H 0.96999 * 120.00161 * 175.15027 * 13 12 10 31 31 H 1.09000 * 117.49787 * 0.02562 * 18 9 8 32 32 H 1.08998 * 117.50031 * 145.01796 * 18 9 8 33 33 H 1.08997 * 117.50143 * 214.98349 * 19 9 8 34 34 H 1.09003 * 117.49587 * 359.97438 * 19 9 8 35 35 H 1.09000 * 109.46479 * 85.34177 * 21 20 8 36 36 H 1.09002 * 109.47234 * 205.33648 * 21 20 8 37 37 H 1.08989 * 109.47640 * 325.34199 * 21 20 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2108 0.0000 4 6 2.3616 1.8300 1.2009 5 6 2.0255 1.1578 2.5071 6 6 2.9892 3.0604 1.1981 7 6 3.3027 3.6753 -0.0002 8 6 2.9885 3.0609 -1.1981 9 6 3.3311 3.7341 -2.5021 10 6 4.3625 3.0302 -3.3457 11 1 4.2816 3.0459 -4.4225 12 6 5.4096 2.3661 -2.7427 13 7 5.5995 2.4774 -1.4461 14 14 6.5584 1.3079 -3.7674 15 1 7.2143 2.1478 -4.8016 16 1 7.5938 0.7072 -2.8886 17 1 5.7808 0.2281 -4.4266 18 6 3.3182 5.2637 -2.5322 19 6 2.2082 4.4748 -3.2311 20 6 2.3607 1.8302 -1.2006 21 6 2.0179 1.1612 -2.5069 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3634 -1.0276 0.0005 25 1 1.0290 1.4626 2.8268 26 1 2.0499 0.0760 2.3759 27 1 2.7545 1.4485 3.2635 28 1 3.2347 3.5430 2.1326 29 1 3.7939 4.6372 -0.0002 30 1 6.2918 1.9558 -1.0107 31 1 3.0624 5.7832 -1.6087 32 1 4.0556 5.7609 -3.1624 33 1 2.2157 4.4532 -4.3209 34 1 1.2216 4.4747 -2.7678 35 1 2.8806 0.5990 -2.8644 36 1 1.1781 0.4824 -2.3581 37 1 1.7472 1.9182 -3.2428 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260133655.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:50:13 Heat of formation + Delta-G solvation = -10.911702 kcal Electronic energy + Delta-G solvation = -18570.604218 eV Core-core repulsion = 15892.158432 eV Total energy + Delta-G solvation = -2678.445787 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.07310 -38.94565 -37.01635 -34.14508 -33.79576 -31.75688 -28.79467 -27.75882 -27.20506 -26.69776 -23.35133 -22.54820 -21.91357 -20.68735 -18.82794 -17.45530 -16.98159 -16.59280 -16.38828 -16.05612 -15.38588 -14.86673 -14.69345 -14.24214 -14.11846 -13.85909 -13.56287 -13.42617 -12.90853 -12.82361 -12.77837 -12.66052 -12.46255 -12.29382 -12.06880 -12.00864 -11.70946 -11.42338 -11.06944 -10.75245 -10.45667 -10.12231 -9.11757 -8.96331 -7.95126 -6.11794 0.65158 0.80854 1.40215 1.43005 1.48073 2.43705 2.85682 3.06130 3.20527 3.70517 4.11932 4.17814 4.31269 4.43752 4.50651 4.56496 4.58751 4.62709 4.73375 4.80904 4.83940 4.88257 4.92085 4.94694 4.96999 5.14327 5.16559 5.19772 5.26362 5.51010 5.56117 5.62276 5.73599 5.83532 5.90890 6.15267 6.27416 6.43802 6.83687 6.89418 7.48062 8.96826 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.020465 B = 0.009536 C = 0.008831 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1367.848489 B = 2935.433196 C = 3169.745054 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.350 6.350 3 C 0.071 3.929 4 C -0.138 4.138 5 C -0.094 4.094 6 C -0.124 4.124 7 C -0.104 4.104 8 C 0.030 3.970 9 C 0.058 3.942 10 C -0.500 4.500 11 H 0.053 0.947 12 C 0.038 3.962 13 N -0.880 5.880 14 Si 0.932 3.068 15 H -0.272 1.272 16 H -0.289 1.289 17 H -0.274 1.274 18 C -0.203 4.203 19 C -0.184 4.184 20 C -0.113 4.113 21 C -0.080 4.080 22 H 0.051 0.949 23 H 0.042 0.958 24 H 0.113 0.887 25 H 0.077 0.923 26 H 0.061 0.939 27 H 0.071 0.929 28 H 0.134 0.866 29 H 0.103 0.897 30 H 0.256 0.744 31 H 0.078 0.922 32 H 0.072 0.928 33 H 0.083 0.917 34 H 0.083 0.917 35 H 0.043 0.957 36 H 0.061 0.939 37 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.340 -1.872 5.083 10.797 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.268 6.268 3 C 0.028 3.972 4 C -0.139 4.139 5 C -0.150 4.150 6 C -0.142 4.142 7 C -0.122 4.122 8 C 0.030 3.970 9 C 0.057 3.943 10 C -0.537 4.537 11 H 0.071 0.929 12 C -0.165 4.165 13 N -0.515 5.515 14 Si 0.759 3.241 15 H -0.198 1.198 16 H -0.215 1.215 17 H -0.199 1.199 18 C -0.241 4.241 19 C -0.221 4.221 20 C -0.113 4.113 21 C -0.137 4.137 22 H 0.070 0.930 23 H 0.060 0.940 24 H 0.131 0.869 25 H 0.096 0.904 26 H 0.080 0.920 27 H 0.090 0.910 28 H 0.152 0.848 29 H 0.121 0.879 30 H 0.065 0.935 31 H 0.097 0.903 32 H 0.091 0.909 33 H 0.101 0.899 34 H 0.102 0.898 35 H 0.062 0.938 36 H 0.080 0.920 37 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -9.092 -2.069 5.229 10.691 hybrid contribution 1.031 -0.214 -0.703 1.266 sum -8.061 -2.283 4.526 9.522 Atomic orbital electron populations 1.23132 0.78307 1.04161 1.00791 1.85932 1.21018 1.25351 1.94472 1.18356 1.00277 0.86714 0.91867 1.20189 1.02798 0.95476 0.95420 1.20557 1.02028 0.99935 0.92486 1.20920 1.00301 0.95092 0.97845 1.20827 0.98808 1.00171 0.92388 1.18864 0.91541 0.92746 0.93892 1.17791 0.95218 0.89235 0.92010 1.20576 1.07256 1.34034 0.91877 0.92859 1.25461 0.97956 0.97247 0.95816 1.70123 1.32617 1.39066 1.09721 0.86011 0.79179 0.79823 0.79132 1.19772 1.21530 1.19887 1.23040 1.01703 0.98041 1.01328 1.22911 0.93358 1.07242 0.98562 1.19986 1.01469 0.94801 0.95092 1.20379 0.99823 0.99394 0.94089 0.92998 0.93957 0.86914 0.90424 0.91988 0.90961 0.84796 0.87926 0.93489 0.90335 0.90941 0.89857 0.89827 0.93811 0.92006 0.91694 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.77 10.74 113.37 1.22 1.99 16 2 O -0.35 -12.71 8.62 -92.35 -0.80 -13.50 16 3 C 0.07 2.90 5.67 22.51 0.13 3.03 16 4 C -0.14 -5.19 5.89 -19.77 -0.12 -5.31 16 5 C -0.09 -2.65 9.79 71.24 0.70 -1.95 16 6 C -0.12 -4.79 9.70 22.25 0.22 -4.57 16 7 C -0.10 -4.62 8.52 22.28 0.19 -4.43 16 8 C 0.03 1.42 3.29 -19.88 -0.07 1.36 16 9 C 0.06 2.78 1.07 -53.68 -0.06 2.72 16 10 C -0.50 -26.57 8.08 25.60 0.21 -26.36 16 11 H 0.05 2.83 7.83 -2.91 -0.02 2.81 16 12 C 0.04 2.04 5.28 84.65 0.45 2.49 16 13 N -0.88 -49.24 11.15 21.45 0.24 -49.00 16 14 Si 0.93 43.46 29.55 68.60 2.03 45.49 16 15 H -0.27 -12.38 7.11 99.48 0.71 -11.68 16 16 H -0.29 -13.52 7.11 99.48 0.71 -12.81 16 17 H -0.27 -12.55 7.11 99.48 0.71 -11.85 16 18 C -0.20 -8.91 9.43 30.62 0.29 -8.62 16 19 C -0.18 -7.58 9.02 30.62 0.28 -7.31 16 20 C -0.11 -5.08 5.87 -19.77 -0.12 -5.19 16 21 C -0.08 -3.39 8.62 71.24 0.61 -2.78 16 22 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 23 H 0.04 1.09 7.35 -2.39 -0.02 1.07 16 24 H 0.11 2.22 8.14 -2.39 -0.02 2.20 16 25 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 26 H 0.06 1.78 7.53 -2.39 -0.02 1.76 16 27 H 0.07 1.83 8.09 -2.38 -0.02 1.81 16 28 H 0.13 4.33 8.06 -2.91 -0.02 4.30 16 29 H 0.10 4.59 7.03 -2.91 -0.02 4.57 16 30 H 0.26 14.13 8.32 -92.71 -0.77 13.36 16 31 H 0.08 3.22 7.14 -2.39 -0.02 3.20 16 32 H 0.07 3.22 8.14 -2.39 -0.02 3.20 16 33 H 0.08 3.31 8.14 -2.39 -0.02 3.29 16 34 H 0.08 3.17 8.14 -2.39 -0.02 3.15 16 35 H 0.04 2.03 8.14 -2.39 -0.02 2.01 16 36 H 0.06 2.24 6.26 -2.39 -0.01 2.23 16 37 H 0.06 2.71 6.42 -2.39 -0.02 2.69 16 Total: -1.00 -60.08 302.63 6.44 -53.64 By element: Atomic # 1 Polarization: 17.27 SS G_CDS: 1.04 Total: 18.32 kcal Atomic # 6 Polarization: -58.87 SS G_CDS: 3.93 Total: -54.95 kcal Atomic # 7 Polarization: -49.24 SS G_CDS: 0.24 Total: -49.00 kcal Atomic # 8 Polarization: -12.71 SS G_CDS: -0.80 Total: -13.50 kcal Atomic # 14 Polarization: 43.46 SS G_CDS: 2.03 Total: 45.49 kcal Total: -60.08 6.44 -53.64 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260133655.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.728 kcal (2) G-P(sol) polarization free energy of solvation -60.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.441 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.639 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.912 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds