Wall clock time and date at job start Mon Mar 30 2020 05:40:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38284 * 119.94543 * 2 1 4 4 C 1.38120 * 120.05589 * 180.02562 * 3 2 1 5 5 C 1.38753 * 119.94809 * 359.97308 * 4 3 2 6 6 O 1.35894 * 120.06038 * 180.02562 * 5 4 3 7 7 C 1.42901 * 116.99902 * 0.02562 * 6 5 4 8 8 C 1.53001 * 109.47280 * 179.97438 * 7 6 5 9 9 C 1.53000 * 117.50223 * 185.00165 * 8 7 6 10 10 C 1.52997 * 117.49889 * 116.37426 * 8 7 6 11 11 C 1.38712 * 119.88216 * 0.27760 * 5 4 3 12 12 C 1.50707 * 120.02585 * 179.72382 * 11 5 4 13 13 C 1.50699 * 109.47138 * 85.00150 * 12 11 5 14 14 H 1.07998 * 119.99866 * 359.97438 * 13 12 11 15 15 C 1.37871 * 120.00052 * 180.02562 * 13 12 11 16 16 N 1.31515 * 119.99924 * 359.97438 * 15 13 12 17 17 Si 1.86806 * 120.00014 * 179.97438 * 15 13 12 18 18 H 1.48500 * 109.46829 * 60.00168 * 17 15 13 19 19 H 1.48499 * 109.47240 * 179.97438 * 17 15 13 20 20 H 1.48493 * 109.47150 * 300.00077 * 17 15 13 21 21 C 1.38166 * 119.95006 * 359.44837 * 11 5 4 22 22 H 1.09002 * 109.47138 * 90.00700 * 1 2 3 23 23 H 1.09005 * 109.47203 * 210.00494 * 1 2 3 24 24 H 1.08999 * 109.47573 * 330.00210 * 1 2 3 25 25 H 1.08000 * 119.96963 * 359.97438 * 3 2 1 26 26 H 1.07997 * 120.02709 * 179.97438 * 4 3 2 27 27 H 1.08999 * 109.47069 * 60.00108 * 7 6 5 28 28 H 1.08991 * 109.47296 * 299.99672 * 7 6 5 29 29 H 1.09002 * 115.55911 * 330.68854 * 8 7 6 30 30 H 1.08990 * 117.49990 * 145.01974 * 9 8 7 31 31 H 1.09004 * 117.49237 * 359.97438 * 9 8 7 32 32 H 1.08999 * 117.49685 * 0.02562 * 10 8 7 33 33 H 1.08999 * 117.52022 * 214.97106 * 10 8 7 34 34 H 1.09005 * 109.47146 * 204.99994 * 12 11 5 35 35 H 1.08999 * 109.46970 * 324.99925 * 12 11 5 36 36 H 0.97006 * 119.99672 * 180.02562 * 16 15 13 37 37 H 1.07990 * 119.98055 * 180.27569 * 21 11 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1972 1.1982 0.0000 4 6 3.5784 1.2009 -0.0005 5 6 4.2734 0.0000 -0.0005 6 8 5.6324 -0.0001 -0.0005 7 6 6.2811 1.2732 0.0000 8 6 7.7980 1.0727 0.0006 9 6 8.6755 2.3204 0.1195 10 6 8.5778 1.5781 -1.2148 11 6 3.5786 -1.2006 -0.0058 12 6 4.3302 -2.5069 -0.0120 13 6 4.6886 -2.8870 1.4015 14 1 4.4012 -2.2466 2.2222 15 6 5.3842 -4.0518 1.6468 16 7 5.7345 -4.8315 0.6473 17 14 5.8290 -4.5227 3.3990 18 1 4.5886 -4.6697 4.2021 19 1 6.5695 -5.8099 3.3928 20 1 6.6819 -3.4633 3.9949 21 6 2.1970 -1.1980 0.0005 22 1 -0.3633 -0.0001 -1.0277 23 1 -0.3634 -0.8900 0.5139 24 1 -0.3634 0.8900 0.5138 25 1 1.6559 2.1327 -0.0004 26 1 4.1171 2.1370 -0.0010 27 1 5.9883 1.8298 0.8903 28 1 5.9884 1.8305 -0.8897 29 1 8.1517 0.1609 0.4819 30 1 9.6064 2.2295 0.6790 31 1 8.1721 3.2841 0.1970 32 1 8.0102 2.0538 -2.0147 33 1 9.4447 0.9992 -1.5333 34 1 3.7040 -3.2843 -0.4497 35 1 5.2409 -2.3992 -0.6013 36 1 6.2236 -5.6512 0.8200 37 1 1.6556 -2.1324 0.0009 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260141659.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:40:51 Heat of formation + Delta-G solvation = -6.064424 kcal Electronic energy + Delta-G solvation = -17385.918538 eV Core-core repulsion = 14707.682945 eV Total energy + Delta-G solvation = -2678.235593 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.65900 -37.74569 -36.32438 -33.52150 -31.62818 -30.88735 -27.62461 -27.14903 -25.41320 -23.27697 -22.38931 -21.66340 -20.25364 -19.65668 -17.49129 -16.21770 -16.04603 -15.33249 -14.86584 -14.60583 -14.12715 -14.07015 -13.62823 -13.29054 -12.57676 -12.49396 -12.33009 -11.86833 -11.76909 -11.53124 -11.29143 -11.12493 -10.94857 -10.83587 -10.52951 -10.46234 -10.36492 -10.22901 -9.78122 -9.45610 -9.31460 -8.30927 -8.05411 -7.23945 -5.92759 -3.94644 2.02090 2.11079 3.37678 3.41020 3.44769 3.55893 3.95292 4.38629 4.57103 4.82080 4.91490 5.09128 5.26598 5.34429 5.39757 5.45296 5.47192 5.56308 5.60228 5.70131 5.72539 5.87310 5.90672 5.95917 6.08782 6.17936 6.27319 6.36268 6.43005 6.77190 6.90573 7.01242 7.25484 7.46649 7.70347 7.89323 8.02968 8.17808 8.45282 9.08454 9.66945 11.17273 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.011322 B = 0.009512 C = 0.005655 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2472.406171 B = 2942.866097 C = 4950.572539 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C -0.131 4.131 3 C -0.110 4.110 4 C -0.213 4.213 5 C 0.122 3.878 6 O -0.289 6.289 7 C 0.091 3.909 8 C -0.150 4.150 9 C -0.175 4.175 10 C -0.177 4.177 11 C -0.061 4.061 12 C 0.058 3.942 13 C -0.500 4.500 14 H 0.053 0.947 15 C 0.058 3.942 16 N -0.896 5.896 17 Si 0.892 3.108 18 H -0.277 1.277 19 H -0.287 1.287 20 H -0.277 1.277 21 C -0.090 4.090 22 H 0.060 0.940 23 H 0.062 0.938 24 H 0.056 0.944 25 H 0.111 0.889 26 H 0.115 0.885 27 H 0.059 0.941 28 H 0.054 0.946 29 H 0.121 0.879 30 H 0.097 0.903 31 H 0.093 0.907 32 H 0.094 0.906 33 H 0.096 0.904 34 H 0.026 0.974 35 H 0.034 0.966 36 H 0.260 0.740 37 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.478 13.670 -2.566 13.987 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.131 4.131 3 C -0.129 4.129 4 C -0.232 4.232 5 C 0.076 3.924 6 O -0.202 6.202 7 C 0.016 3.984 8 C -0.168 4.168 9 C -0.212 4.212 10 C -0.214 4.214 11 C -0.062 4.062 12 C 0.021 3.979 13 C -0.538 4.538 14 H 0.071 0.929 15 C -0.143 4.143 16 N -0.536 5.536 17 Si 0.720 3.280 18 H -0.203 1.203 19 H -0.213 1.213 20 H -0.203 1.203 21 C -0.108 4.108 22 H 0.079 0.921 23 H 0.081 0.919 24 H 0.075 0.925 25 H 0.129 0.871 26 H 0.133 0.867 27 H 0.077 0.923 28 H 0.072 0.928 29 H 0.139 0.861 30 H 0.116 0.884 31 H 0.111 0.889 32 H 0.112 0.888 33 H 0.115 0.885 34 H 0.044 0.956 35 H 0.053 0.947 36 H 0.070 0.930 37 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -1.245 13.338 -2.606 13.647 hybrid contribution 0.302 -0.010 1.013 1.057 sum -0.943 13.328 -1.593 13.456 Atomic orbital electron populations 1.20644 0.91977 1.01953 1.01382 1.19718 0.95492 0.93275 1.04623 1.20490 0.93155 0.96908 1.02298 1.21057 0.95288 0.96403 1.10413 1.18865 0.82102 0.93557 0.97836 1.86260 1.16379 1.29160 1.88361 1.22148 0.90562 0.85357 1.00366 1.22136 0.91814 0.99599 1.03258 1.22955 1.01534 0.95788 1.00877 1.23057 1.03029 1.03732 0.91567 1.20116 0.93091 0.95545 0.97456 1.18185 0.94961 0.86983 0.97793 1.20968 1.35220 1.05792 0.91840 0.92872 1.24962 0.95954 0.96463 0.96902 1.69953 1.39712 1.13328 1.30574 0.86654 0.78585 0.77600 0.85158 1.20289 1.21305 1.20291 1.20801 0.92975 0.97165 0.99850 0.92106 0.91946 0.92459 0.87086 0.86662 0.92300 0.92757 0.86121 0.88428 0.88864 0.88797 0.88532 0.95615 0.94746 0.92990 0.85873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.36 10.01 36.00 0.36 -1.00 16 2 C -0.13 -2.25 5.88 -104.60 -0.62 -2.86 16 3 C -0.11 -1.81 9.69 -39.61 -0.38 -2.20 16 4 C -0.21 -3.76 9.04 -39.43 -0.36 -4.11 16 5 C 0.12 2.58 6.66 -39.22 -0.26 2.32 16 6 O -0.29 -6.14 9.27 -19.41 -0.18 -6.32 16 7 C 0.09 1.45 5.02 37.16 0.19 1.63 16 8 C -0.15 -2.17 6.06 -90.62 -0.55 -2.72 16 9 C -0.17 -1.92 10.25 -26.73 -0.27 -2.19 16 10 C -0.18 -2.11 10.18 -26.73 -0.27 -2.38 16 11 C -0.06 -1.42 5.08 -104.47 -0.53 -1.95 16 12 C 0.06 1.56 4.83 -29.03 -0.14 1.42 16 13 C -0.50 -14.58 9.09 -34.44 -0.31 -14.89 16 14 H 0.05 1.55 7.74 -52.49 -0.41 1.15 16 15 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 16 N -0.90 -27.23 13.29 55.43 0.74 -26.49 16 17 Si 0.89 22.24 29.54 -169.99 -5.02 17.21 16 18 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 19 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 20 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 21 C -0.09 -1.82 9.33 -39.60 -0.37 -2.19 16 22 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 23 H 0.06 0.80 8.08 -51.93 -0.42 0.38 16 24 H 0.06 0.66 8.08 -51.93 -0.42 0.24 16 25 H 0.11 1.48 8.06 -52.49 -0.42 1.06 16 26 H 0.12 1.71 6.30 -52.49 -0.33 1.38 16 27 H 0.06 0.86 7.66 -51.93 -0.40 0.47 16 28 H 0.05 0.76 7.39 -51.93 -0.38 0.38 16 29 H 0.12 1.98 8.14 -51.93 -0.42 1.55 16 30 H 0.10 0.97 8.14 -51.93 -0.42 0.54 16 31 H 0.09 0.90 8.14 -51.93 -0.42 0.47 16 32 H 0.09 1.04 8.03 -51.93 -0.42 0.62 16 33 H 0.10 1.08 8.14 -51.93 -0.42 0.66 16 34 H 0.03 0.72 8.05 -51.93 -0.42 0.30 16 35 H 0.03 1.00 7.69 -51.93 -0.40 0.60 16 36 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 37 H 0.12 2.38 8.06 -52.49 -0.42 1.96 16 LS Contribution 314.17 15.07 4.73 4.73 Total: -1.00 -31.60 314.17 -9.03 -40.63 By element: Atomic # 1 Polarization: 5.45 SS G_CDS: -5.69 Total: -0.24 kcal Atomic # 6 Polarization: -25.91 SS G_CDS: -3.62 Total: -29.52 kcal Atomic # 7 Polarization: -27.23 SS G_CDS: 0.74 Total: -26.49 kcal Atomic # 8 Polarization: -6.14 SS G_CDS: -0.18 Total: -6.32 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -5.02 Total: 17.21 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -31.60 -9.03 -40.63 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260141659.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.568 kcal (2) G-P(sol) polarization free energy of solvation -31.599 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.969 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.033 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.632 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds