Wall clock time and date at job start Mon Mar 30 2020 05:40:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38284 * 119.94543 * 2 1 4 4 C 1.38120 * 120.05589 * 180.02562 * 3 2 1 5 5 C 1.38753 * 119.94809 * 359.97308 * 4 3 2 6 6 O 1.35894 * 120.06038 * 180.02562 * 5 4 3 7 7 C 1.42901 * 116.99902 * 0.02562 * 6 5 4 8 8 C 1.53001 * 109.47280 * 179.97438 * 7 6 5 9 9 C 1.53000 * 117.50223 * 185.00165 * 8 7 6 10 10 C 1.52997 * 117.49889 * 116.37426 * 8 7 6 11 11 C 1.38712 * 119.88216 * 0.27760 * 5 4 3 12 12 C 1.50707 * 120.02585 * 179.72382 * 11 5 4 13 13 C 1.50699 * 109.47138 * 85.00150 * 12 11 5 14 14 H 1.07998 * 119.99866 * 359.97438 * 13 12 11 15 15 C 1.37871 * 120.00052 * 180.02562 * 13 12 11 16 16 N 1.31515 * 119.99924 * 359.97438 * 15 13 12 17 17 Si 1.86806 * 120.00014 * 179.97438 * 15 13 12 18 18 H 1.48500 * 109.46829 * 60.00168 * 17 15 13 19 19 H 1.48499 * 109.47240 * 179.97438 * 17 15 13 20 20 H 1.48493 * 109.47150 * 300.00077 * 17 15 13 21 21 C 1.38166 * 119.95006 * 359.44837 * 11 5 4 22 22 H 1.09002 * 109.47138 * 90.00700 * 1 2 3 23 23 H 1.09005 * 109.47203 * 210.00494 * 1 2 3 24 24 H 1.08999 * 109.47573 * 330.00210 * 1 2 3 25 25 H 1.08000 * 119.96963 * 359.97438 * 3 2 1 26 26 H 1.07997 * 120.02709 * 179.97438 * 4 3 2 27 27 H 1.08999 * 109.47069 * 60.00108 * 7 6 5 28 28 H 1.08991 * 109.47296 * 299.99672 * 7 6 5 29 29 H 1.09002 * 115.55911 * 330.68854 * 8 7 6 30 30 H 1.08990 * 117.49990 * 145.01974 * 9 8 7 31 31 H 1.09004 * 117.49237 * 359.97438 * 9 8 7 32 32 H 1.08999 * 117.49685 * 0.02562 * 10 8 7 33 33 H 1.08999 * 117.52022 * 214.97106 * 10 8 7 34 34 H 1.09005 * 109.47146 * 204.99994 * 12 11 5 35 35 H 1.08999 * 109.46970 * 324.99925 * 12 11 5 36 36 H 0.97006 * 119.99672 * 180.02562 * 16 15 13 37 37 H 1.07990 * 119.98055 * 180.27569 * 21 11 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1972 1.1982 0.0000 4 6 3.5784 1.2009 -0.0005 5 6 4.2734 0.0000 -0.0005 6 8 5.6324 -0.0001 -0.0005 7 6 6.2811 1.2732 0.0000 8 6 7.7980 1.0727 0.0006 9 6 8.6755 2.3204 0.1195 10 6 8.5778 1.5781 -1.2148 11 6 3.5786 -1.2006 -0.0058 12 6 4.3302 -2.5069 -0.0120 13 6 4.6886 -2.8870 1.4015 14 1 4.4012 -2.2466 2.2222 15 6 5.3842 -4.0518 1.6468 16 7 5.7345 -4.8315 0.6473 17 14 5.8290 -4.5227 3.3990 18 1 4.5886 -4.6697 4.2021 19 1 6.5695 -5.8099 3.3928 20 1 6.6819 -3.4633 3.9949 21 6 2.1970 -1.1980 0.0005 22 1 -0.3633 -0.0001 -1.0277 23 1 -0.3634 -0.8900 0.5139 24 1 -0.3634 0.8900 0.5138 25 1 1.6559 2.1327 -0.0004 26 1 4.1171 2.1370 -0.0010 27 1 5.9883 1.8298 0.8903 28 1 5.9884 1.8305 -0.8897 29 1 8.1517 0.1609 0.4819 30 1 9.6064 2.2295 0.6790 31 1 8.1721 3.2841 0.1970 32 1 8.0102 2.0538 -2.0147 33 1 9.4447 0.9992 -1.5333 34 1 3.7040 -3.2843 -0.4497 35 1 5.2409 -2.3992 -0.6013 36 1 6.2236 -5.6512 0.8200 37 1 1.6556 -2.1324 0.0009 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260141659.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:40:50 Heat of formation + Delta-G solvation = -23.155279 kcal Electronic energy + Delta-G solvation = -17386.659653 eV Core-core repulsion = 14707.682945 eV Total energy + Delta-G solvation = -2678.976708 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.11867 -39.00225 -37.54073 -35.56769 -33.39506 -32.33552 -29.14766 -28.78892 -26.70821 -25.29448 -23.30101 -23.09715 -21.50040 -21.17470 -18.93357 -18.48217 -17.33175 -16.71343 -16.64134 -16.08264 -15.55040 -15.27632 -14.91426 -14.57140 -14.30934 -14.07018 -13.86572 -13.45947 -13.21564 -12.87983 -12.82417 -12.56281 -12.41009 -12.37275 -12.18803 -12.01627 -11.84648 -11.51287 -11.41182 -11.19209 -10.85074 -10.59297 -9.61203 -8.76029 -8.17049 -6.30283 0.54093 0.63901 1.35058 1.39116 1.47114 2.33015 2.38910 2.88478 2.96880 3.11592 3.76214 3.89391 3.99511 4.03218 4.08431 4.17585 4.23638 4.39246 4.54558 4.56138 4.61589 4.73429 4.83820 4.93790 4.94560 4.96853 5.11166 5.19777 5.21810 5.23521 5.26117 5.41843 5.51016 5.73332 5.77766 5.91158 6.10949 6.20757 6.74603 6.79932 7.36165 8.91389 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.011322 B = 0.009512 C = 0.005655 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2472.406171 B = 2942.866097 C = 4950.572539 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C -0.128 4.128 3 C -0.097 4.097 4 C -0.205 4.205 5 C 0.101 3.899 6 O -0.330 6.330 7 C 0.089 3.911 8 C -0.188 4.188 9 C -0.144 4.144 10 C -0.174 4.174 11 C -0.108 4.108 12 C 0.073 3.927 13 C -0.517 4.517 14 H 0.046 0.954 15 C 0.003 3.997 16 N -0.932 5.932 17 Si 0.963 3.037 18 H -0.265 1.265 19 H -0.277 1.277 20 H -0.271 1.271 21 C -0.103 4.103 22 H 0.078 0.922 23 H 0.061 0.939 24 H 0.084 0.916 25 H 0.158 0.842 26 H 0.149 0.851 27 H 0.070 0.930 28 H 0.075 0.925 29 H 0.086 0.914 30 H 0.109 0.891 31 H 0.116 0.884 32 H 0.106 0.894 33 H 0.098 0.902 34 H -0.001 1.001 35 H -0.005 1.005 36 H 0.264 0.736 37 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.469 16.766 -1.639 17.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.128 4.128 3 C -0.115 4.115 4 C -0.223 4.223 5 C 0.056 3.944 6 O -0.244 6.244 7 C 0.014 3.986 8 C -0.207 4.207 9 C -0.181 4.181 10 C -0.210 4.210 11 C -0.108 4.108 12 C 0.036 3.964 13 C -0.555 4.555 14 H 0.065 0.935 15 C -0.195 4.195 16 N -0.572 5.572 17 Si 0.787 3.213 18 H -0.190 1.190 19 H -0.202 1.202 20 H -0.196 1.196 21 C -0.121 4.121 22 H 0.096 0.904 23 H 0.080 0.920 24 H 0.102 0.898 25 H 0.175 0.825 26 H 0.166 0.834 27 H 0.088 0.912 28 H 0.093 0.907 29 H 0.105 0.895 30 H 0.127 0.873 31 H 0.134 0.866 32 H 0.124 0.876 33 H 0.117 0.883 34 H 0.017 0.983 35 H 0.014 0.986 36 H 0.073 0.927 37 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -2.244 16.447 -1.683 16.684 hybrid contribution 0.592 -0.907 0.660 1.269 sum -1.651 15.540 -1.022 15.661 Atomic orbital electron populations 1.20714 0.88727 1.03333 1.02910 1.20147 0.97784 0.92189 1.02673 1.21057 0.92771 0.98355 0.99312 1.21413 0.96107 0.96098 1.08721 1.19034 0.82402 0.94193 0.98772 1.86213 1.16905 1.32632 1.88637 1.22424 0.90798 0.83682 1.01707 1.22091 0.91790 1.00523 1.06248 1.23090 1.00728 0.94853 0.99394 1.23174 1.02492 1.03509 0.91871 1.19899 0.94406 0.94458 1.02082 1.17804 0.93330 0.89100 0.96190 1.21244 1.35579 1.06085 0.92627 0.93521 1.25913 0.95598 0.96257 1.01716 1.70089 1.40281 1.13789 1.33043 0.85532 0.78736 0.77567 0.79421 1.19015 1.20205 1.19645 1.20870 0.91979 0.98716 1.00580 0.90373 0.91962 0.89752 0.82476 0.83356 0.91158 0.90739 0.89524 0.87257 0.86571 0.87563 0.88342 0.98316 0.98634 0.92688 0.86538 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.29 10.01 71.23 0.71 -1.58 16 2 C -0.13 -4.11 5.88 -19.85 -0.12 -4.22 16 3 C -0.10 -2.82 9.69 22.25 0.22 -2.61 16 4 C -0.20 -6.76 9.04 22.37 0.20 -6.56 16 5 C 0.10 4.38 6.66 22.51 0.15 4.53 16 6 O -0.33 -14.72 9.27 -92.36 -0.86 -15.58 16 7 C 0.09 2.78 5.02 71.98 0.36 3.14 16 8 C -0.19 -5.51 6.06 -10.79 -0.07 -5.58 16 9 C -0.14 -2.85 10.25 30.60 0.31 -2.54 16 10 C -0.17 -3.95 10.18 30.60 0.31 -3.64 16 11 C -0.11 -5.26 5.08 -19.77 -0.10 -5.36 16 12 C 0.07 4.28 4.83 29.10 0.14 4.42 16 13 C -0.52 -31.90 9.09 25.60 0.23 -31.67 16 14 H 0.05 2.86 7.74 -2.91 -0.02 2.83 16 15 C 0.00 0.16 5.46 84.65 0.46 0.62 16 16 N -0.93 -59.28 13.29 21.45 0.28 -58.99 16 17 Si 0.96 46.78 29.54 68.60 2.03 48.81 16 18 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 19 H -0.28 -12.89 7.11 99.48 0.71 -12.19 16 20 H -0.27 -12.83 7.11 99.48 0.71 -12.12 16 21 C -0.10 -4.28 9.33 22.26 0.21 -4.08 16 22 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 23 H 0.06 1.44 8.08 -2.38 -0.02 1.42 16 24 H 0.08 1.51 8.08 -2.39 -0.02 1.49 16 25 H 0.16 3.17 8.06 -2.91 -0.02 3.15 16 26 H 0.15 3.82 6.30 -2.91 -0.02 3.80 16 27 H 0.07 1.97 7.66 -2.39 -0.02 1.95 16 28 H 0.07 1.97 7.39 -2.39 -0.02 1.95 16 29 H 0.09 3.08 8.14 -2.39 -0.02 3.06 16 30 H 0.11 1.91 8.14 -2.39 -0.02 1.89 16 31 H 0.12 1.80 8.14 -2.38 -0.02 1.78 16 32 H 0.11 2.14 8.03 -2.39 -0.02 2.12 16 33 H 0.10 2.16 8.14 -2.39 -0.02 2.14 16 34 H 0.00 -0.09 8.05 -2.38 -0.02 -0.11 16 35 H 0.00 -0.30 7.69 -2.39 -0.02 -0.32 16 36 H 0.26 15.72 8.31 -92.70 -0.77 14.95 16 37 H 0.12 4.77 8.06 -2.92 -0.02 4.75 16 Total: -1.00 -73.90 314.17 5.52 -68.38 By element: Atomic # 1 Polarization: 11.47 SS G_CDS: 1.03 Total: 12.50 kcal Atomic # 6 Polarization: -58.15 SS G_CDS: 3.03 Total: -55.12 kcal Atomic # 7 Polarization: -59.28 SS G_CDS: 0.28 Total: -58.99 kcal Atomic # 8 Polarization: -14.72 SS G_CDS: -0.86 Total: -15.58 kcal Atomic # 14 Polarization: 46.78 SS G_CDS: 2.03 Total: 48.81 kcal Total: -73.90 5.52 -68.38 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260141659.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.226 kcal (2) G-P(sol) polarization free energy of solvation -73.897 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.672 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.381 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds