Wall clock time and date at job start Mon Mar 30 2020 05:35:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35899 * 116.99975 * 2 1 4 4 C 1.38749 * 120.05610 * 359.97193 * 3 2 1 5 5 C 1.38126 * 119.94183 * 179.74968 * 4 3 2 6 6 C 1.38287 * 120.05674 * 0.55065 * 5 4 3 7 7 C 1.50697 * 119.94943 * 179.72601 * 6 5 4 8 8 C 1.50694 * 115.55118 * 246.02913 * 7 6 5 9 9 H 1.08001 * 120.00407 * 215.58909 * 8 7 6 10 10 C 1.37879 * 120.00258 * 35.58849 * 8 7 6 11 11 N 1.31516 * 119.99880 * 8.03407 * 10 8 7 12 12 Si 1.86796 * 120.00282 * 188.03336 * 10 8 7 13 13 H 1.48498 * 109.47109 * 89.99961 * 12 10 8 14 14 H 1.48499 * 109.47162 * 209.99851 * 12 10 8 15 15 H 1.48506 * 109.46991 * 329.99921 * 12 10 8 16 16 C 1.53001 * 117.49622 * 31.69561 * 7 6 5 17 17 C 1.52999 * 117.50105 * 100.35044 * 7 6 5 18 18 C 1.38250 * 120.10956 * 359.45240 * 6 5 4 19 19 C 1.50699 * 119.97128 * 180.25468 * 18 6 5 20 20 C 1.38166 * 120.05642 * 0.26966 * 18 6 5 21 21 C 1.50700 * 120.02966 * 179.97438 * 20 18 6 22 22 H 1.08996 * 109.47486 * 180.02562 * 1 2 3 23 23 H 1.09002 * 109.47384 * 300.00483 * 1 2 3 24 24 H 1.09001 * 109.46785 * 60.00397 * 1 2 3 25 25 H 1.07997 * 120.02872 * 0.02821 * 4 3 2 26 26 H 1.08000 * 119.97497 * 180.27499 * 5 4 3 27 27 H 0.96996 * 120.00019 * 175.00051 * 11 10 8 28 28 H 1.09008 * 117.49912 * 215.01019 * 16 7 6 29 29 H 1.09006 * 117.50128 * 0.02562 * 16 7 6 30 30 H 1.08996 * 117.49978 * 359.97438 * 17 7 6 31 31 H 1.09003 * 117.49812 * 144.97505 * 17 7 6 32 32 H 1.09003 * 109.47610 * 95.94034 * 19 18 6 33 33 H 1.09000 * 109.46938 * 215.94657 * 19 18 6 34 34 H 1.09004 * 109.47283 * 335.93958 * 19 18 6 35 35 H 1.08992 * 109.47484 * 90.00139 * 21 20 18 36 36 H 1.08996 * 109.46952 * 210.00927 * 21 20 18 37 37 H 1.09002 * 109.46897 * 329.99958 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2914 2.3753 -0.0006 5 6 1.9209 3.6047 0.0046 6 6 3.3019 3.6757 -0.0010 7 6 3.9862 5.0184 -0.0016 8 6 4.7682 5.3489 -1.2466 9 1 5.6867 5.9125 -1.1738 10 6 4.3113 4.9318 -2.4788 11 7 3.1198 4.3858 -2.5879 12 14 5.3846 5.1421 -3.9931 13 1 6.2281 3.9334 -4.1737 14 1 4.5232 5.3276 -5.1884 15 1 6.2556 6.3325 -3.8210 16 6 3.2811 6.1709 0.7165 17 6 4.5299 5.5348 1.3321 18 6 4.0560 2.5170 -0.0005 19 6 5.5608 2.5981 -0.0009 20 6 3.4311 1.2847 0.0000 21 6 4.2537 0.0220 0.0000 22 1 -0.3634 -1.0276 0.0005 23 1 -0.3634 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 0.2128 2.3203 -0.0006 26 1 1.3341 4.5114 0.0087 27 1 2.7687 4.1588 -3.4632 28 1 3.3828 7.1681 0.2883 29 1 2.3225 5.9578 1.1897 30 1 4.3922 4.9036 2.2100 31 1 5.4535 6.1132 1.3090 32 1 5.9297 2.5120 1.0212 33 1 5.9682 1.7865 -0.6038 34 1 5.8731 3.5544 -0.4206 35 1 4.4524 -0.2822 1.0275 36 1 3.7061 -0.7682 -0.5136 37 1 5.1975 0.2033 -0.5143 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260152452.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:35:28 Heat of formation + Delta-G solvation = 4.147648 kcal Electronic energy + Delta-G solvation = -18453.883253 eV Core-core repulsion = 15776.090489 eV Total energy + Delta-G solvation = -2677.792764 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.55639 -37.66579 -35.39771 -32.39109 -32.09049 -30.14906 -27.14029 -26.46213 -25.59508 -25.13433 -21.68272 -21.18120 -19.75992 -18.82358 -16.81716 -16.48916 -15.58895 -15.21416 -14.63053 -14.34761 -13.61376 -13.41981 -13.18648 -12.94471 -12.31419 -12.12881 -11.96184 -11.65525 -11.40433 -11.32788 -11.18702 -10.96802 -10.86796 -10.61522 -10.44390 -10.31421 -9.98985 -9.79917 -9.40316 -9.07587 -8.74477 -8.22805 -7.54870 -6.94612 -5.94461 -4.06912 2.40533 2.57887 3.27278 3.35625 3.36827 3.91479 4.37005 4.80267 5.00923 5.39671 5.48302 5.54447 5.61954 5.73780 5.77361 5.92832 6.09607 6.16003 6.21648 6.27298 6.36725 6.43047 6.52635 6.62620 6.66420 6.69646 6.83192 6.89300 7.00470 7.04487 7.30939 7.33972 7.44791 7.63137 7.77487 7.86341 8.00833 8.29370 8.38244 8.88076 9.50364 10.99606 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.020999 B = 0.009049 C = 0.008365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1333.069422 B = 3093.464459 C = 3346.361880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.326 6.326 3 C 0.092 3.908 4 C -0.213 4.213 5 C -0.053 4.053 6 C 0.013 3.987 7 C 0.089 3.911 8 C -0.495 4.495 9 H 0.063 0.937 10 C 0.077 3.923 11 N -0.858 5.858 12 Si 0.886 3.114 13 H -0.278 1.278 14 H -0.287 1.287 15 H -0.274 1.274 16 C -0.207 4.207 17 C -0.204 4.204 18 C -0.040 4.040 19 C -0.119 4.119 20 C -0.130 4.130 21 C -0.096 4.096 22 H 0.087 0.913 23 H 0.047 0.953 24 H 0.049 0.951 25 H 0.108 0.892 26 H 0.109 0.891 27 H 0.261 0.739 28 H 0.078 0.922 29 H 0.065 0.935 30 H 0.068 0.932 31 H 0.077 0.923 32 H 0.050 0.950 33 H 0.050 0.950 34 H 0.101 0.899 35 H 0.054 0.946 36 H 0.057 0.943 37 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.273 -5.781 4.757 7.824 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.240 6.240 3 C 0.049 3.951 4 C -0.232 4.232 5 C -0.071 4.071 6 C 0.013 3.987 7 C 0.089 3.911 8 C -0.532 4.532 9 H 0.081 0.919 10 C -0.128 4.128 11 N -0.492 5.492 12 Si 0.714 3.286 13 H -0.204 1.204 14 H -0.213 1.213 15 H -0.199 1.199 16 C -0.245 4.245 17 C -0.241 4.241 18 C -0.041 4.041 19 C -0.175 4.175 20 C -0.130 4.130 21 C -0.153 4.153 22 H 0.106 0.894 23 H 0.066 0.934 24 H 0.068 0.932 25 H 0.126 0.874 26 H 0.127 0.873 27 H 0.071 0.929 28 H 0.097 0.903 29 H 0.084 0.916 30 H 0.086 0.914 31 H 0.095 0.905 32 H 0.069 0.931 33 H 0.068 0.932 34 H 0.120 0.880 35 H 0.073 0.927 36 H 0.076 0.924 37 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -2.303 -6.119 4.608 7.999 hybrid contribution -0.076 0.365 -1.038 1.103 sum -2.380 -5.754 3.570 7.178 Atomic orbital electron populations 1.22841 0.80016 1.02437 1.00902 1.85947 1.19998 1.28048 1.90020 1.18526 0.91581 0.83313 1.01716 1.20882 0.98368 0.92742 1.11174 1.20487 0.94509 0.95517 0.96574 1.18825 0.91917 0.93452 0.94555 1.17674 0.95822 0.87494 0.90144 1.20381 1.08032 1.35658 0.89081 0.91886 1.24967 0.94960 0.94135 0.98772 1.69995 1.15572 1.39939 1.23699 0.86686 0.80691 0.78609 0.82641 1.20390 1.21287 1.19863 1.23056 0.94075 1.00230 1.07112 1.22912 0.97366 1.05493 0.98351 1.19185 0.95735 0.90807 0.98340 1.20956 0.91681 1.04662 1.00222 1.18829 0.90137 0.95218 1.08833 1.20516 0.98933 0.94943 1.00891 0.89423 0.93438 0.93245 0.87381 0.87264 0.92858 0.90346 0.91622 0.91390 0.90458 0.93112 0.93158 0.88012 0.92691 0.92412 0.91980 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.46 9.81 101.05 0.99 1.45 16 2 O -0.33 -5.95 9.54 -19.42 -0.19 -6.13 16 3 C 0.09 1.91 6.66 -39.22 -0.26 1.65 16 4 C -0.21 -4.41 9.04 -39.43 -0.36 -4.76 16 5 C -0.05 -1.20 8.49 -39.60 -0.34 -1.53 16 6 C 0.01 0.31 3.31 -104.60 -0.35 -0.03 16 7 C 0.09 2.13 1.14 -156.82 -0.18 1.96 16 8 C -0.49 -12.84 6.95 -34.44 -0.24 -13.08 16 9 H 0.06 1.63 7.83 -52.49 -0.41 1.22 16 10 C 0.08 2.04 5.28 -17.82 -0.09 1.95 16 11 N -0.86 -23.44 11.14 55.43 0.62 -22.82 16 12 Si 0.89 20.63 29.55 -169.99 -5.02 15.61 16 13 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 14 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 15 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 16 C -0.21 -4.59 9.42 -26.70 -0.25 -4.84 16 17 C -0.20 -4.33 9.94 -26.70 -0.27 -4.59 16 18 C -0.04 -0.91 5.86 -104.64 -0.61 -1.52 16 19 C -0.12 -2.44 9.14 36.00 0.33 -2.11 16 20 C -0.13 -2.74 5.89 -104.47 -0.62 -3.36 16 21 C -0.10 -1.70 9.38 36.01 0.34 -1.36 16 22 H 0.09 0.93 8.14 -51.93 -0.42 0.50 16 23 H 0.05 0.60 7.66 -51.93 -0.40 0.20 16 24 H 0.05 0.67 7.66 -51.93 -0.40 0.27 16 25 H 0.11 1.94 6.30 -52.49 -0.33 1.61 16 26 H 0.11 2.46 7.04 -52.49 -0.37 2.09 16 27 H 0.26 6.99 8.32 -40.82 -0.34 6.65 16 28 H 0.08 1.74 8.14 -51.92 -0.42 1.32 16 29 H 0.07 1.38 7.16 -51.93 -0.37 1.00 16 30 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 31 H 0.08 1.58 8.14 -51.93 -0.42 1.16 16 32 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 33 H 0.05 0.95 6.21 -51.93 -0.32 0.63 16 34 H 0.10 2.28 5.17 -51.93 -0.27 2.02 16 35 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 36 H 0.06 0.99 7.53 -51.93 -0.39 0.60 16 37 H 0.06 1.04 6.04 -51.93 -0.31 0.73 16 LS Contribution 297.63 15.07 4.49 4.49 Total: -1.00 -28.20 297.63 -7.25 -35.45 By element: Atomic # 1 Polarization: 8.85 SS G_CDS: -5.25 Total: 3.61 kcal Atomic # 6 Polarization: -28.29 SS G_CDS: -1.90 Total: -30.19 kcal Atomic # 7 Polarization: -23.44 SS G_CDS: 0.62 Total: -22.82 kcal Atomic # 8 Polarization: -5.95 SS G_CDS: -0.19 Total: -6.13 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.02 Total: 15.61 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -28.20 -7.25 -35.45 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260152452.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.595 kcal (2) G-P(sol) polarization free energy of solvation -28.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.398 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.250 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.447 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds