Wall clock time and date at job start Mon Mar 30 2020 05:35:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35899 * 116.99975 * 2 1 4 4 C 1.38749 * 120.05610 * 359.97193 * 3 2 1 5 5 C 1.38126 * 119.94183 * 179.74968 * 4 3 2 6 6 C 1.38287 * 120.05674 * 0.55065 * 5 4 3 7 7 C 1.50697 * 119.94943 * 179.72601 * 6 5 4 8 8 C 1.50694 * 115.55118 * 246.02913 * 7 6 5 9 9 H 1.08001 * 120.00407 * 215.58909 * 8 7 6 10 10 C 1.37879 * 120.00258 * 35.58849 * 8 7 6 11 11 N 1.31516 * 119.99880 * 8.03407 * 10 8 7 12 12 Si 1.86796 * 120.00282 * 188.03336 * 10 8 7 13 13 H 1.48498 * 109.47109 * 89.99961 * 12 10 8 14 14 H 1.48499 * 109.47162 * 209.99851 * 12 10 8 15 15 H 1.48506 * 109.46991 * 329.99921 * 12 10 8 16 16 C 1.53001 * 117.49622 * 31.69561 * 7 6 5 17 17 C 1.52999 * 117.50105 * 100.35044 * 7 6 5 18 18 C 1.38250 * 120.10956 * 359.45240 * 6 5 4 19 19 C 1.50699 * 119.97128 * 180.25468 * 18 6 5 20 20 C 1.38166 * 120.05642 * 0.26966 * 18 6 5 21 21 C 1.50700 * 120.02966 * 179.97438 * 20 18 6 22 22 H 1.08996 * 109.47486 * 180.02562 * 1 2 3 23 23 H 1.09002 * 109.47384 * 300.00483 * 1 2 3 24 24 H 1.09001 * 109.46785 * 60.00397 * 1 2 3 25 25 H 1.07997 * 120.02872 * 0.02821 * 4 3 2 26 26 H 1.08000 * 119.97497 * 180.27499 * 5 4 3 27 27 H 0.96996 * 120.00019 * 175.00051 * 11 10 8 28 28 H 1.09008 * 117.49912 * 215.01019 * 16 7 6 29 29 H 1.09006 * 117.50128 * 0.02562 * 16 7 6 30 30 H 1.08996 * 117.49978 * 359.97438 * 17 7 6 31 31 H 1.09003 * 117.49812 * 144.97505 * 17 7 6 32 32 H 1.09003 * 109.47610 * 95.94034 * 19 18 6 33 33 H 1.09000 * 109.46938 * 215.94657 * 19 18 6 34 34 H 1.09004 * 109.47283 * 335.93958 * 19 18 6 35 35 H 1.08992 * 109.47484 * 90.00139 * 21 20 18 36 36 H 1.08996 * 109.46952 * 210.00927 * 21 20 18 37 37 H 1.09002 * 109.46897 * 329.99958 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2914 2.3753 -0.0006 5 6 1.9209 3.6047 0.0046 6 6 3.3019 3.6757 -0.0010 7 6 3.9862 5.0184 -0.0016 8 6 4.7682 5.3489 -1.2466 9 1 5.6867 5.9125 -1.1738 10 6 4.3113 4.9318 -2.4788 11 7 3.1198 4.3858 -2.5879 12 14 5.3846 5.1421 -3.9931 13 1 6.2281 3.9334 -4.1737 14 1 4.5232 5.3276 -5.1884 15 1 6.2556 6.3325 -3.8210 16 6 3.2811 6.1709 0.7165 17 6 4.5299 5.5348 1.3321 18 6 4.0560 2.5170 -0.0005 19 6 5.5608 2.5981 -0.0009 20 6 3.4311 1.2847 0.0000 21 6 4.2537 0.0220 0.0000 22 1 -0.3634 -1.0276 0.0005 23 1 -0.3634 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 0.2128 2.3203 -0.0006 26 1 1.3341 4.5114 0.0087 27 1 2.7687 4.1588 -3.4632 28 1 3.3828 7.1681 0.2883 29 1 2.3225 5.9578 1.1897 30 1 4.3922 4.9036 2.2100 31 1 5.4535 6.1132 1.3090 32 1 5.9297 2.5120 1.0212 33 1 5.9682 1.7865 -0.6038 34 1 5.8731 3.5544 -0.4206 35 1 4.4524 -0.2822 1.0275 36 1 3.7061 -0.7682 -0.5136 37 1 5.1975 0.2033 -0.5143 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260152452.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:35:28 Heat of formation + Delta-G solvation = -9.366378 kcal Electronic energy + Delta-G solvation = -18454.469265 eV Core-core repulsion = 15776.090489 eV Total energy + Delta-G solvation = -2678.378776 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.09709 -39.22684 -37.03413 -34.14264 -33.88218 -31.69592 -28.37570 -28.03987 -27.54217 -26.62806 -23.37425 -22.87862 -21.33146 -20.59400 -18.33615 -18.28406 -17.08817 -16.59474 -16.47788 -16.06561 -15.23859 -14.93039 -14.76289 -14.46594 -13.93318 -13.68220 -13.47847 -13.24028 -13.01241 -12.86678 -12.80360 -12.67248 -12.37669 -12.32931 -12.17291 -12.03447 -11.56093 -11.37552 -11.19461 -10.92183 -10.54863 -10.09370 -9.15955 -8.62214 -7.86617 -6.08047 0.76427 0.94875 1.41491 1.45551 1.51894 2.44875 2.59688 3.09192 3.15546 3.72594 4.14283 4.14578 4.23840 4.43032 4.44313 4.55492 4.58929 4.69271 4.70370 4.74080 4.79868 4.88720 4.92911 4.98142 5.05571 5.14820 5.19779 5.25658 5.31232 5.44111 5.58172 5.69776 5.74260 5.83899 5.97760 6.24752 6.31135 6.48924 6.75396 6.90897 7.50038 8.99926 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.020999 B = 0.009049 C = 0.008365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1333.069422 B = 3093.464459 C = 3346.361880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.333 6.333 3 C 0.090 3.910 4 C -0.216 4.216 5 C -0.072 4.072 6 C -0.006 4.006 7 C 0.064 3.936 8 C -0.501 4.501 9 H 0.056 0.944 10 C 0.038 3.962 11 N -0.880 5.880 12 Si 0.936 3.064 13 H -0.277 1.277 14 H -0.290 1.290 15 H -0.269 1.269 16 C -0.208 4.208 17 C -0.184 4.184 18 C -0.060 4.060 19 C -0.113 4.113 20 C -0.144 4.144 21 C -0.091 4.091 22 H 0.122 0.878 23 H 0.058 0.942 24 H 0.048 0.952 25 H 0.131 0.869 26 H 0.100 0.900 27 H 0.255 0.745 28 H 0.071 0.929 29 H 0.074 0.926 30 H 0.081 0.919 31 H 0.083 0.917 32 H 0.071 0.929 33 H 0.061 0.939 34 H 0.078 0.922 35 H 0.073 0.927 36 H 0.061 0.939 37 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.215 -7.044 5.262 9.067 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.248 6.248 3 C 0.045 3.955 4 C -0.234 4.234 5 C -0.090 4.090 6 C -0.007 4.007 7 C 0.064 3.936 8 C -0.538 4.538 9 H 0.074 0.926 10 C -0.165 4.165 11 N -0.516 5.516 12 Si 0.763 3.237 13 H -0.203 1.203 14 H -0.216 1.216 15 H -0.194 1.194 16 C -0.245 4.245 17 C -0.221 4.221 18 C -0.060 4.060 19 C -0.169 4.169 20 C -0.144 4.144 21 C -0.147 4.147 22 H 0.140 0.860 23 H 0.077 0.923 24 H 0.067 0.933 25 H 0.149 0.851 26 H 0.118 0.882 27 H 0.065 0.935 28 H 0.090 0.910 29 H 0.092 0.908 30 H 0.100 0.900 31 H 0.102 0.898 32 H 0.089 0.911 33 H 0.080 0.920 34 H 0.097 0.903 35 H 0.092 0.908 36 H 0.080 0.920 37 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -2.242 -7.377 5.123 9.257 hybrid contribution -0.158 0.723 -1.147 1.365 sum -2.400 -6.654 3.975 8.115 Atomic orbital electron populations 1.23189 0.77559 1.04955 1.01380 1.85938 1.22488 1.26682 1.89647 1.18669 0.91855 0.84134 1.00814 1.21106 0.99681 0.92179 1.10461 1.20530 0.94502 0.96048 0.97923 1.18890 0.92376 0.93579 0.95843 1.17752 0.96962 0.88405 0.90520 1.20581 1.07822 1.35142 0.90243 0.92613 1.25504 0.95793 0.94295 1.00859 1.70135 1.16701 1.41238 1.23504 0.85894 0.79326 0.78547 0.79926 1.20289 1.21584 1.19370 1.23025 0.95062 0.99375 1.07076 1.22903 0.97012 1.04640 0.97527 1.19463 0.96649 0.91110 0.98791 1.20889 0.90810 1.03729 1.01510 1.19247 0.91023 0.96064 1.08115 1.20528 0.98610 0.93406 1.02196 0.85998 0.92346 0.93311 0.85084 0.88197 0.93545 0.90993 0.90779 0.90049 0.89820 0.91088 0.91994 0.90319 0.90843 0.92033 0.91406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.58 9.81 113.37 1.11 1.69 16 2 O -0.33 -11.40 9.54 -92.41 -0.88 -12.28 16 3 C 0.09 3.58 6.66 22.51 0.15 3.73 16 4 C -0.22 -8.75 9.04 22.37 0.20 -8.55 16 5 C -0.07 -3.27 8.49 22.25 0.19 -3.08 16 6 C -0.01 -0.30 3.31 -19.85 -0.07 -0.36 16 7 C 0.06 3.07 1.14 -53.68 -0.06 3.00 16 8 C -0.50 -26.14 6.95 25.60 0.18 -25.96 16 9 H 0.06 2.90 7.83 -2.91 -0.02 2.88 16 10 C 0.04 2.03 5.28 84.65 0.45 2.48 16 11 N -0.88 -48.66 11.14 21.45 0.24 -48.42 16 12 Si 0.94 42.54 29.55 68.60 2.03 44.56 16 13 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 14 H -0.29 -13.18 7.11 99.48 0.71 -12.48 16 15 H -0.27 -11.88 7.11 99.48 0.71 -11.18 16 16 C -0.21 -9.19 9.42 30.62 0.29 -8.90 16 17 C -0.18 -7.64 9.94 30.62 0.30 -7.33 16 18 C -0.06 -2.65 5.86 -19.88 -0.12 -2.77 16 19 C -0.11 -4.51 9.14 71.24 0.65 -3.86 16 20 C -0.14 -5.89 5.89 -19.77 -0.12 -6.01 16 21 C -0.09 -3.01 9.38 71.24 0.67 -2.34 16 22 H 0.12 2.14 8.14 -2.39 -0.02 2.12 16 23 H 0.06 1.31 7.66 -2.39 -0.02 1.29 16 24 H 0.05 1.21 7.66 -2.39 -0.02 1.19 16 25 H 0.13 4.51 6.30 -2.91 -0.02 4.50 16 26 H 0.10 4.59 7.04 -2.91 -0.02 4.57 16 27 H 0.26 13.86 8.32 -92.71 -0.77 13.09 16 28 H 0.07 3.22 8.14 -2.38 -0.02 3.20 16 29 H 0.07 3.10 7.16 -2.38 -0.02 3.09 16 30 H 0.08 3.14 8.14 -2.39 -0.02 3.12 16 31 H 0.08 3.33 8.14 -2.39 -0.02 3.31 16 32 H 0.07 2.46 8.14 -2.39 -0.02 2.44 16 33 H 0.06 2.25 6.21 -2.39 -0.01 2.24 16 34 H 0.08 3.50 5.17 -2.38 -0.01 3.49 16 35 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 36 H 0.06 1.97 7.53 -2.39 -0.02 1.95 16 37 H 0.07 2.13 6.04 -2.39 -0.01 2.12 16 Total: -1.00 -59.34 297.63 6.27 -53.07 By element: Atomic # 1 Polarization: 20.27 SS G_CDS: 1.06 Total: 21.32 kcal Atomic # 6 Polarization: -62.09 SS G_CDS: 3.83 Total: -58.26 kcal Atomic # 7 Polarization: -48.66 SS G_CDS: 0.24 Total: -48.42 kcal Atomic # 8 Polarization: -11.40 SS G_CDS: -0.88 Total: -12.28 kcal Atomic # 14 Polarization: 42.54 SS G_CDS: 2.03 Total: 44.56 kcal Total: -59.34 6.27 -53.07 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260152452.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.705 kcal (2) G-P(sol) polarization free energy of solvation -59.345 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.640 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.273 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.071 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.366 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds