Wall clock time and date at job start Mon Mar 30 2020 05:37:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.37904 * 119.91848 * 2 1 4 4 C 1.39829 * 119.82825 * 180.29651 * 3 2 1 5 5 C 1.47167 * 120.17379 * 179.97438 * 4 3 2 6 6 O 1.21255 * 119.99655 * 3.95996 * 5 4 3 7 7 C 1.39877 * 119.65502 * 359.97438 * 4 3 2 8 8 C 1.50699 * 120.08397 * 179.97438 * 7 4 3 9 9 C 1.52995 * 109.47472 * 299.19507 * 8 7 4 10 10 C 1.53003 * 109.47291 * 59.19695 * 8 7 4 11 11 C 1.50704 * 109.47126 * 179.19191 * 8 7 4 12 12 H 1.07996 * 120.00168 * 245.68610 * 11 8 7 13 13 C 1.37880 * 119.99839 * 65.67542 * 11 8 7 14 14 N 1.31513 * 120.00283 * 181.88927 * 13 11 8 15 15 Si 1.86801 * 119.99885 * 1.89169 * 13 11 8 16 16 H 1.48505 * 109.46943 * 92.41735 * 15 13 11 17 17 H 1.48495 * 109.47422 * 212.41561 * 15 13 11 18 18 H 1.48502 * 109.47371 * 332.42063 * 15 13 11 19 19 C 1.37861 * 119.82553 * 359.97438 * 7 4 3 20 20 C 1.38392 * 119.90855 * 180.27309 * 2 1 3 21 21 C 1.50698 * 119.82679 * 359.72489 * 20 2 1 22 22 H 1.08997 * 109.46999 * 269.72672 * 1 2 3 23 23 H 1.09001 * 109.46946 * 29.73118 * 1 2 3 24 24 H 1.09004 * 109.46994 * 149.72372 * 1 2 3 25 25 H 1.07998 * 120.07946 * 0.26857 * 3 2 1 26 26 H 1.07996 * 120.00029 * 183.96279 * 5 4 3 27 27 H 1.08997 * 109.47422 * 64.82654 * 9 8 7 28 28 H 1.09001 * 109.47008 * 184.83002 * 9 8 7 29 29 H 1.09007 * 109.47093 * 304.82550 * 9 8 7 30 30 H 1.09001 * 109.46773 * 54.90903 * 10 8 7 31 31 H 1.08990 * 109.47400 * 174.91406 * 10 8 7 32 32 H 1.08998 * 109.46937 * 294.91540 * 10 8 7 33 33 H 0.96996 * 120.00470 * 180.02562 * 14 13 11 34 34 H 1.07996 * 119.91303 * 179.97438 * 19 7 4 35 35 H 1.08999 * 109.46709 * 90.00526 * 21 20 2 36 36 H 1.08999 * 109.46713 * 210.00020 * 21 20 2 37 37 H 1.09001 * 109.47316 * 329.99654 * 21 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1948 1.1953 0.0000 4 6 3.5931 1.1931 -0.0063 5 6 4.3348 2.4642 -0.0069 6 8 3.7358 3.5156 0.0706 7 6 4.2833 -0.0236 -0.0120 8 6 5.7902 -0.0372 -0.0193 9 6 6.3004 0.6641 -1.2797 10 6 6.3129 0.6945 1.2185 11 6 6.2797 -1.4624 -0.0044 12 1 6.8236 -1.8377 0.8498 13 6 6.0330 -2.2874 -1.0813 14 7 6.4276 -3.5416 -1.0529 15 14 5.1384 -1.6235 -2.5807 16 1 6.1295 -1.1283 -3.5695 17 1 4.3272 -2.7062 -3.1929 18 1 4.2473 -0.5081 -2.1720 19 6 3.5813 -1.2101 -0.0108 20 6 2.1971 -1.1996 -0.0057 21 6 1.4376 -2.5012 -0.0056 22 1 -0.3633 -0.0049 1.0276 23 1 -0.3633 0.8924 -0.5097 24 1 -0.3633 -0.8875 -0.5181 25 1 1.6548 2.1305 0.0044 26 1 5.4125 2.4605 -0.0764 27 1 6.0192 1.7167 -1.2489 28 1 7.3861 0.5794 -1.3283 29 1 5.8597 0.1958 -2.1598 30 1 5.8774 0.2507 2.1138 31 1 7.3985 0.6070 1.2609 32 1 6.0351 1.7470 1.1628 33 1 6.2544 -4.1219 -1.8106 34 1 4.1127 -2.1502 -0.0156 35 1 1.2503 -2.8125 -1.0333 36 1 2.0253 -3.2647 0.5039 37 1 0.4879 -2.3677 0.5125 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260153661.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:37:13 Heat of formation + Delta-G solvation = 2.324923 kcal Electronic energy + Delta-G solvation = -18683.822734 eV Core-core repulsion = 16005.950931 eV Total energy + Delta-G solvation = -2677.871803 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.03051 -37.94310 -36.31160 -32.64035 -31.56286 -31.27643 -27.86025 -26.72903 -26.14756 -25.17638 -23.01840 -21.52478 -19.86586 -18.95679 -16.79134 -16.21836 -15.46373 -14.79274 -14.61011 -14.22673 -14.11772 -13.57475 -13.23221 -13.10928 -13.02724 -12.63367 -12.53750 -12.27590 -12.09679 -11.82208 -11.59613 -11.35141 -11.17575 -10.86122 -10.58780 -10.35258 -10.14260 -9.97892 -9.33305 -9.23411 -8.90718 -8.66260 -8.10150 -7.66138 -6.24893 -4.25999 1.19648 2.01422 2.90293 3.22232 3.32320 3.37198 4.25831 4.36032 4.72559 4.99260 5.20242 5.32312 5.43926 5.57810 5.64535 5.73558 5.77857 5.90886 5.91568 5.95030 6.03098 6.07232 6.15141 6.28369 6.29506 6.36466 6.51854 6.57448 6.66656 6.79471 6.83347 7.01990 7.09815 7.14708 7.34166 7.56243 7.70272 7.88390 8.35937 8.79948 9.35719 10.85972 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.018003 B = 0.013107 C = 0.009099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1554.952086 B = 2135.801669 C = 3076.372740 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.130 4.130 3 C -0.065 4.065 4 C -0.215 4.215 5 C 0.372 3.628 6 O -0.487 6.487 7 C 0.017 3.983 8 C 0.056 3.944 9 C -0.153 4.153 10 C -0.128 4.128 11 C -0.510 4.510 12 H 0.081 0.919 13 C 0.078 3.922 14 N -0.891 5.891 15 Si 0.867 3.133 16 H -0.286 1.286 17 H -0.299 1.299 18 H -0.242 1.242 19 C -0.119 4.119 20 C -0.064 4.064 21 C -0.118 4.118 22 H 0.063 0.937 23 H 0.059 0.941 24 H 0.064 0.936 25 H 0.120 0.880 26 H 0.118 0.882 27 H 0.039 0.961 28 H 0.064 0.936 29 H 0.042 0.958 30 H 0.051 0.949 31 H 0.058 0.942 32 H 0.036 0.964 33 H 0.266 0.734 34 H 0.158 0.842 35 H 0.067 0.933 36 H 0.071 0.929 37 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.461 5.011 1.192 9.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.130 4.130 3 C -0.084 4.084 4 C -0.216 4.216 5 C 0.235 3.765 6 O -0.363 6.363 7 C 0.016 3.984 8 C 0.055 3.945 9 C -0.210 4.210 10 C -0.185 4.185 11 C -0.547 4.547 12 H 0.099 0.901 13 C -0.124 4.124 14 N -0.527 5.527 15 Si 0.698 3.302 16 H -0.214 1.214 17 H -0.227 1.227 18 H -0.167 1.167 19 C -0.137 4.137 20 C -0.064 4.064 21 C -0.174 4.174 22 H 0.082 0.918 23 H 0.078 0.922 24 H 0.083 0.917 25 H 0.138 0.862 26 H 0.134 0.866 27 H 0.058 0.942 28 H 0.083 0.917 29 H 0.061 0.939 30 H 0.070 0.930 31 H 0.077 0.923 32 H 0.055 0.945 33 H 0.076 0.924 34 H 0.175 0.825 35 H 0.086 0.914 36 H 0.089 0.911 37 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -7.767 5.375 1.146 9.514 hybrid contribution -0.382 0.006 -1.049 1.117 sum -8.149 5.381 0.097 9.766 Atomic orbital electron populations 1.20709 0.91787 1.02128 1.01655 1.19544 0.95505 0.92669 1.05240 1.21033 0.93146 0.97232 0.96945 1.20699 0.94374 0.95589 1.10917 1.24856 0.95732 0.86765 0.69178 1.90419 1.74209 1.34644 1.37056 1.20921 0.97975 0.90867 0.88633 1.17765 0.86729 0.97546 0.92469 1.22572 1.01983 0.97819 0.98604 1.21975 1.01235 0.97250 0.98065 1.20813 1.36625 0.92422 1.04852 0.90051 1.25047 0.94857 0.94639 0.97897 1.69887 1.46152 1.05278 1.31388 0.87430 0.80579 0.78723 0.83438 1.21362 1.22688 1.16727 1.21655 0.92228 1.00877 0.98903 1.20103 0.94311 0.94418 0.97595 1.20863 0.99696 0.94765 1.02092 0.91825 0.92200 0.91737 0.86202 0.86602 0.94225 0.91653 0.93935 0.93019 0.92255 0.94511 0.92373 0.82521 0.91434 0.91052 0.91658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.38 9.17 36.01 0.33 -1.05 16 2 C -0.13 -2.22 5.87 -104.69 -0.61 -2.84 16 3 C -0.07 -1.20 9.24 -39.11 -0.36 -1.56 16 4 C -0.21 -4.20 5.68 -105.06 -0.60 -4.80 16 5 C 0.37 6.81 8.75 34.36 0.30 7.11 16 6 O -0.49 -9.67 17.17 5.58 0.10 -9.58 16 7 C 0.02 0.35 2.86 -104.15 -0.30 0.06 16 8 C 0.06 1.18 0.48 -156.81 -0.08 1.11 16 9 C -0.15 -3.08 7.40 37.16 0.28 -2.80 16 10 C -0.13 -2.35 8.05 37.16 0.30 -2.05 16 11 C -0.51 -12.84 7.61 -34.44 -0.26 -13.10 16 12 H 0.08 2.24 7.99 -52.49 -0.42 1.82 16 13 C 0.08 2.06 4.06 -17.82 -0.07 1.99 16 14 N -0.89 -25.15 13.96 55.43 0.77 -24.37 16 15 Si 0.87 20.74 21.70 -169.99 -3.69 17.05 16 16 H -0.29 -6.87 7.08 56.52 0.40 -6.47 16 17 H -0.30 -7.30 7.11 56.52 0.40 -6.90 16 18 H -0.24 -5.58 4.52 56.52 0.26 -5.33 16 19 C -0.12 -2.54 6.03 -39.65 -0.24 -2.77 16 20 C -0.06 -1.18 5.89 -104.50 -0.62 -1.80 16 21 C -0.12 -1.78 9.17 36.00 0.33 -1.45 16 22 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 23 H 0.06 0.72 8.08 -51.93 -0.42 0.30 16 24 H 0.06 0.76 6.70 -51.93 -0.35 0.42 16 25 H 0.12 2.05 7.65 -52.49 -0.40 1.65 16 26 H 0.12 1.92 3.37 -52.49 -0.18 1.75 16 27 H 0.04 0.68 4.76 -51.93 -0.25 0.43 16 28 H 0.06 1.26 8.14 -51.93 -0.42 0.83 16 29 H 0.04 0.92 2.63 -51.93 -0.14 0.78 16 30 H 0.05 0.95 8.14 -51.93 -0.42 0.52 16 31 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 32 H 0.04 0.59 4.73 -51.93 -0.25 0.34 16 33 H 0.27 7.16 8.31 -40.82 -0.34 6.82 16 34 H 0.16 3.68 5.02 -52.49 -0.26 3.42 16 35 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 36 H 0.07 1.08 8.08 -51.93 -0.42 0.66 16 37 H 0.06 0.82 6.69 -51.93 -0.35 0.47 16 LS Contribution 276.53 15.07 4.17 4.17 Total: -1.00 -28.61 276.53 -5.07 -33.68 By element: Atomic # 1 Polarization: 7.83 SS G_CDS: -4.82 Total: 3.01 kcal Atomic # 6 Polarization: -22.35 SS G_CDS: -1.60 Total: -23.95 kcal Atomic # 7 Polarization: -25.15 SS G_CDS: 0.77 Total: -24.37 kcal Atomic # 8 Polarization: -9.67 SS G_CDS: 0.10 Total: -9.58 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -3.69 Total: 17.05 kcal Total LS contribution 4.17 Total: 4.17 kcal Total: -28.61 -5.07 -33.68 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260153661.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.003 kcal (2) G-P(sol) polarization free energy of solvation -28.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.398 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.678 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds