Wall clock time and date at job start Mon Mar 30 2020 05:37:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.37904 * 119.91848 * 2 1 4 4 C 1.39829 * 119.82825 * 180.29651 * 3 2 1 5 5 C 1.47167 * 120.17379 * 179.97438 * 4 3 2 6 6 O 1.21255 * 119.99655 * 3.95996 * 5 4 3 7 7 C 1.39877 * 119.65502 * 359.97438 * 4 3 2 8 8 C 1.50699 * 120.08397 * 179.97438 * 7 4 3 9 9 C 1.52995 * 109.47472 * 299.19507 * 8 7 4 10 10 C 1.53003 * 109.47291 * 59.19695 * 8 7 4 11 11 C 1.50704 * 109.47126 * 179.19191 * 8 7 4 12 12 H 1.07996 * 120.00168 * 245.68610 * 11 8 7 13 13 C 1.37880 * 119.99839 * 65.67542 * 11 8 7 14 14 N 1.31513 * 120.00283 * 181.88927 * 13 11 8 15 15 Si 1.86801 * 119.99885 * 1.89169 * 13 11 8 16 16 H 1.48505 * 109.46943 * 92.41735 * 15 13 11 17 17 H 1.48495 * 109.47422 * 212.41561 * 15 13 11 18 18 H 1.48502 * 109.47371 * 332.42063 * 15 13 11 19 19 C 1.37861 * 119.82553 * 359.97438 * 7 4 3 20 20 C 1.38392 * 119.90855 * 180.27309 * 2 1 3 21 21 C 1.50698 * 119.82679 * 359.72489 * 20 2 1 22 22 H 1.08997 * 109.46999 * 269.72672 * 1 2 3 23 23 H 1.09001 * 109.46946 * 29.73118 * 1 2 3 24 24 H 1.09004 * 109.46994 * 149.72372 * 1 2 3 25 25 H 1.07998 * 120.07946 * 0.26857 * 3 2 1 26 26 H 1.07996 * 120.00029 * 183.96279 * 5 4 3 27 27 H 1.08997 * 109.47422 * 64.82654 * 9 8 7 28 28 H 1.09001 * 109.47008 * 184.83002 * 9 8 7 29 29 H 1.09007 * 109.47093 * 304.82550 * 9 8 7 30 30 H 1.09001 * 109.46773 * 54.90903 * 10 8 7 31 31 H 1.08990 * 109.47400 * 174.91406 * 10 8 7 32 32 H 1.08998 * 109.46937 * 294.91540 * 10 8 7 33 33 H 0.96996 * 120.00470 * 180.02562 * 14 13 11 34 34 H 1.07996 * 119.91303 * 179.97438 * 19 7 4 35 35 H 1.08999 * 109.46709 * 90.00526 * 21 20 2 36 36 H 1.08999 * 109.46713 * 210.00020 * 21 20 2 37 37 H 1.09001 * 109.47316 * 329.99654 * 21 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1948 1.1953 0.0000 4 6 3.5931 1.1931 -0.0063 5 6 4.3348 2.4642 -0.0069 6 8 3.7358 3.5156 0.0706 7 6 4.2833 -0.0236 -0.0120 8 6 5.7902 -0.0372 -0.0193 9 6 6.3004 0.6641 -1.2797 10 6 6.3129 0.6945 1.2185 11 6 6.2797 -1.4624 -0.0044 12 1 6.8236 -1.8377 0.8498 13 6 6.0330 -2.2874 -1.0813 14 7 6.4276 -3.5416 -1.0529 15 14 5.1384 -1.6235 -2.5807 16 1 6.1295 -1.1283 -3.5695 17 1 4.3272 -2.7062 -3.1929 18 1 4.2473 -0.5081 -2.1720 19 6 3.5813 -1.2101 -0.0108 20 6 2.1971 -1.1996 -0.0057 21 6 1.4376 -2.5012 -0.0056 22 1 -0.3633 -0.0049 1.0276 23 1 -0.3633 0.8924 -0.5097 24 1 -0.3633 -0.8875 -0.5181 25 1 1.6548 2.1305 0.0044 26 1 5.4125 2.4605 -0.0764 27 1 6.0192 1.7167 -1.2489 28 1 7.3861 0.5794 -1.3283 29 1 5.8597 0.1958 -2.1598 30 1 5.8774 0.2507 2.1138 31 1 7.3985 0.6070 1.2609 32 1 6.0351 1.7470 1.1628 33 1 6.2544 -4.1219 -1.8106 34 1 4.1127 -2.1502 -0.0156 35 1 1.2503 -2.8125 -1.0333 36 1 2.0253 -3.2647 0.5039 37 1 0.4879 -2.3677 0.5125 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260153661.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:37:12 Heat of formation + Delta-G solvation = -14.512462 kcal Electronic energy + Delta-G solvation = -18684.552858 eV Core-core repulsion = 16005.950931 eV Total energy + Delta-G solvation = -2678.601927 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.52450 -39.41347 -37.86583 -34.42759 -33.16623 -32.63754 -29.29409 -28.28373 -27.44815 -26.94203 -24.52818 -22.97365 -21.38636 -20.58431 -18.60657 -17.73577 -16.98049 -16.58652 -16.01683 -15.76331 -15.53762 -14.96610 -14.84333 -14.69864 -14.61159 -14.22056 -13.98528 -13.63186 -13.32498 -13.22938 -13.01000 -12.78474 -12.57008 -12.28923 -12.23505 -12.04895 -11.96758 -11.53010 -11.07324 -10.95417 -10.67313 -10.44623 -9.57653 -9.14597 -8.31363 -6.33025 -0.26844 0.54128 1.26658 1.37966 1.43566 1.49558 2.28588 2.88282 3.03098 3.32774 3.89672 3.95550 4.03436 4.21688 4.32066 4.38216 4.43040 4.49193 4.54724 4.72760 4.77899 4.79664 4.84611 4.88766 4.94422 5.00911 5.05965 5.10100 5.22625 5.35948 5.40263 5.48270 5.52385 5.64326 5.72349 5.91585 6.16573 6.31741 6.43870 6.75070 7.31822 8.83609 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.018003 B = 0.013107 C = 0.009099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1554.952086 B = 2135.801669 C = 3076.372740 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.124 4.124 3 C -0.070 4.070 4 C -0.224 4.224 5 C 0.379 3.621 6 O -0.500 6.500 7 C 0.000 4.000 8 C 0.051 3.949 9 C -0.155 4.155 10 C -0.125 4.125 11 C -0.500 4.500 12 H 0.044 0.956 13 C 0.040 3.960 14 N -0.938 5.938 15 Si 0.918 3.082 16 H -0.287 1.287 17 H -0.311 1.311 18 H -0.226 1.226 19 C -0.147 4.147 20 C -0.069 4.069 21 C -0.118 4.118 22 H 0.082 0.918 23 H 0.074 0.926 24 H 0.078 0.922 25 H 0.135 0.865 26 H 0.138 0.862 27 H 0.072 0.928 28 H 0.068 0.932 29 H 0.027 0.973 30 H 0.043 0.957 31 H 0.062 0.938 32 H 0.064 0.936 33 H 0.264 0.736 34 H 0.125 0.875 35 H 0.075 0.925 36 H 0.061 0.939 37 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.588 7.155 1.006 12.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.124 4.124 3 C -0.088 4.088 4 C -0.225 4.225 5 C 0.243 3.757 6 O -0.377 6.377 7 C -0.001 4.001 8 C 0.050 3.950 9 C -0.211 4.211 10 C -0.182 4.182 11 C -0.537 4.537 12 H 0.063 0.937 13 C -0.158 4.158 14 N -0.578 5.578 15 Si 0.749 3.251 16 H -0.215 1.215 17 H -0.240 1.240 18 H -0.150 1.150 19 C -0.165 4.165 20 C -0.069 4.069 21 C -0.174 4.174 22 H 0.100 0.900 23 H 0.093 0.907 24 H 0.097 0.903 25 H 0.153 0.847 26 H 0.154 0.846 27 H 0.090 0.910 28 H 0.087 0.913 29 H 0.046 0.954 30 H 0.062 0.938 31 H 0.081 0.919 32 H 0.083 0.917 33 H 0.074 0.926 34 H 0.142 0.858 35 H 0.094 0.906 36 H 0.080 0.920 37 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -9.894 7.545 0.973 12.481 hybrid contribution 0.245 -0.677 -0.880 1.137 sum -9.649 6.868 0.093 11.844 Atomic orbital electron populations 1.20807 0.88437 1.03652 1.03276 1.19993 0.97876 0.91546 1.02978 1.21342 0.92839 0.98374 0.96251 1.20832 0.95211 0.95349 1.11133 1.24991 0.96329 0.85952 0.68443 1.90424 1.74604 1.34893 1.37769 1.20755 0.97398 0.91538 0.90394 1.17780 0.87505 0.95259 0.94441 1.22549 1.02143 0.99472 0.96969 1.21936 1.01368 0.98470 0.96390 1.21008 1.34942 0.94767 1.03017 0.93728 1.25552 0.95517 0.94524 1.00192 1.70009 1.48753 1.06754 1.32282 0.86630 0.79771 0.78213 0.80533 1.21531 1.23984 1.14961 1.21508 0.93780 0.99720 1.01492 1.20442 0.93457 0.96515 0.96472 1.20937 1.00579 0.92945 1.02931 0.89989 0.90746 0.90267 0.84691 0.84640 0.90969 0.91298 0.95449 0.93773 0.91869 0.91697 0.92637 0.85751 0.90635 0.92005 0.88470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.26 9.17 71.24 0.65 -1.61 16 2 C -0.12 -3.85 5.87 -19.91 -0.12 -3.96 16 3 C -0.07 -2.34 9.24 22.58 0.21 -2.13 16 4 C -0.22 -8.21 5.68 -20.15 -0.11 -8.33 16 5 C 0.38 12.67 8.75 70.17 0.61 13.28 16 6 O -0.50 -18.19 17.17 -2.95 -0.05 -18.25 16 7 C 0.00 0.00 2.86 -19.56 -0.06 -0.06 16 8 C 0.05 2.12 0.48 -53.67 -0.03 2.10 16 9 C -0.16 -5.93 7.40 71.98 0.53 -5.40 16 10 C -0.12 -4.41 8.05 71.98 0.58 -3.83 16 11 C -0.50 -25.93 7.61 25.60 0.19 -25.74 16 12 H 0.04 2.58 7.99 -2.91 -0.02 2.56 16 13 C 0.04 2.20 4.06 84.66 0.34 2.54 16 14 N -0.94 -55.38 13.96 21.45 0.30 -55.08 16 15 Si 0.92 43.63 21.70 68.60 1.49 45.11 16 16 H -0.29 -13.53 7.08 99.48 0.70 -12.82 16 17 H -0.31 -15.16 7.11 99.48 0.71 -14.45 16 18 H -0.23 -10.05 4.52 99.48 0.45 -9.60 16 19 C -0.15 -6.24 6.03 22.23 0.13 -6.10 16 20 C -0.07 -2.41 5.89 -19.78 -0.12 -2.53 16 21 C -0.12 -3.32 9.17 71.24 0.65 -2.67 16 22 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 23 H 0.07 1.42 8.08 -2.39 -0.02 1.40 16 24 H 0.08 1.50 6.70 -2.38 -0.02 1.48 16 25 H 0.14 4.09 7.65 -2.91 -0.02 4.07 16 26 H 0.14 3.97 3.37 -2.91 -0.01 3.96 16 27 H 0.07 2.25 4.76 -2.39 -0.01 2.24 16 28 H 0.07 2.55 8.14 -2.39 -0.02 2.53 16 29 H 0.03 1.13 2.63 -2.38 -0.01 1.12 16 30 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 31 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 32 H 0.06 1.90 4.73 -2.39 -0.01 1.89 16 33 H 0.26 14.89 8.31 -92.71 -0.77 14.12 16 34 H 0.12 6.07 5.02 -2.91 -0.01 6.06 16 35 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 36 H 0.06 1.85 8.08 -2.39 -0.02 1.83 16 37 H 0.10 2.09 6.69 -2.39 -0.02 2.07 16 Total: -1.00 -63.04 276.53 6.05 -56.99 By element: Atomic # 1 Polarization: 14.83 SS G_CDS: 0.82 Total: 15.66 kcal Atomic # 6 Polarization: -47.92 SS G_CDS: 3.48 Total: -44.43 kcal Atomic # 7 Polarization: -55.38 SS G_CDS: 0.30 Total: -55.08 kcal Atomic # 8 Polarization: -18.19 SS G_CDS: -0.05 Total: -18.25 kcal Atomic # 14 Polarization: 43.63 SS G_CDS: 1.49 Total: 45.11 kcal Total: -63.04 6.05 -56.99 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260153661.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.480 kcal (2) G-P(sol) polarization free energy of solvation -63.038 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.992 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.512 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds