Wall clock time and date at job start Mon Mar 30 2020 05:50:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35897 * 116.99512 * 2 1 4 4 C 1.38737 * 120.05633 * 90.00712 * 3 2 1 5 5 C 1.50704 * 120.02609 * 359.69448 * 4 3 2 6 6 C 1.38143 * 119.94617 * 179.97438 * 4 3 2 7 7 C 1.38270 * 120.05597 * 0.02562 * 6 4 3 8 8 C 1.50694 * 119.94282 * 179.97438 * 7 6 4 9 9 C 1.50703 * 115.55015 * 234.32095 * 8 7 6 10 10 H 1.08001 * 119.99906 * 263.14086 * 9 8 7 11 11 C 1.37875 * 119.99562 * 83.14142 * 9 8 7 12 12 N 1.31511 * 120.00061 * 353.11347 * 11 9 8 13 13 Si 1.86804 * 119.99590 * 173.11742 * 11 9 8 14 14 H 1.48497 * 109.47153 * 59.99982 * 13 11 9 15 15 H 1.48501 * 109.47055 * 179.97438 * 13 11 9 16 16 H 1.48496 * 109.47067 * 299.99868 * 13 11 9 17 17 C 1.53004 * 117.49942 * 88.65843 * 8 7 6 18 18 C 1.52998 * 117.50297 * 19.99528 * 8 7 6 19 19 C 1.38265 * 120.10850 * 359.95143 * 7 6 4 20 20 C 1.38145 * 120.05874 * 0.05090 * 19 7 6 21 21 C 1.50698 * 120.02862 * 179.97438 * 20 19 7 22 22 H 1.08999 * 109.47629 * 60.00000 * 1 2 3 23 23 H 1.09006 * 109.46884 * 179.97438 * 1 2 3 24 24 H 1.08997 * 109.47077 * 299.99369 * 1 2 3 25 25 H 1.08999 * 109.46762 * 90.00483 * 5 4 3 26 26 H 1.08996 * 109.47045 * 210.00556 * 5 4 3 27 27 H 1.09003 * 109.46735 * 330.00391 * 5 4 3 28 28 H 1.08003 * 119.97106 * 179.97438 * 6 4 3 29 29 H 0.97008 * 119.99688 * 174.94571 * 12 11 9 30 30 H 1.09007 * 117.49593 * 359.97438 * 17 8 7 31 31 H 1.08990 * 117.50074 * 145.01742 * 17 8 7 32 32 H 1.08993 * 117.50095 * 214.98252 * 18 8 7 33 33 H 1.09004 * 117.49489 * 0.02562 * 18 8 7 34 34 H 1.08002 * 119.96969 * 180.02562 * 19 7 6 35 35 H 1.09001 * 109.47127 * 270.02128 * 21 20 19 36 36 H 1.09007 * 109.47145 * 30.01567 * 21 20 19 37 37 H 1.09000 * 109.47551 * 150.01914 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 2.3614 1.8300 1.2008 5 6 2.0142 1.1633 2.5070 6 6 2.9889 3.0607 1.1982 7 6 3.3021 3.6758 0.0001 8 6 3.9861 5.0185 0.0001 9 6 3.2970 6.0991 -0.7927 10 1 3.6132 6.3125 -1.8031 11 6 2.2628 6.8151 -0.2281 12 7 1.7877 6.4677 0.9479 13 14 1.5366 8.2786 -1.1338 14 1 0.9917 7.8313 -2.4407 15 1 0.4454 8.8724 -0.3202 16 1 2.5950 9.2952 -1.3606 17 6 5.5158 5.0321 0.0318 18 6 4.7204 5.4373 1.2754 19 6 2.9891 3.0606 -1.1980 20 6 2.3615 1.8299 -1.2007 21 6 2.0202 1.1604 -2.5069 22 1 -0.3634 0.5138 -0.8899 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5137 0.8900 25 1 2.8441 0.5320 2.8245 26 1 1.8259 1.9242 3.2645 27 1 1.1214 0.5517 2.3767 28 1 3.2344 3.5432 2.1327 29 1 1.1111 7.0138 1.3782 30 1 6.0273 4.0698 0.0530 31 1 6.0236 5.8228 -0.5204 32 1 4.7053 6.4943 1.5408 33 1 4.7091 4.7413 2.1142 34 1 3.2351 3.5429 -2.1325 35 1 1.0225 1.4661 -2.8221 36 1 2.7463 1.4525 -3.2656 37 1 2.0448 0.0783 -2.3779 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260171618.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:50:15 Heat of formation + Delta-G solvation = -2.116541 kcal Electronic energy + Delta-G solvation = -18054.574116 eV Core-core repulsion = 15376.509717 eV Total energy + Delta-G solvation = -2678.064400 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.63437 -37.44797 -35.41306 -32.97225 -31.98442 -30.07220 -27.64992 -26.25323 -25.71442 -25.23626 -21.90417 -21.26630 -20.05921 -18.83814 -17.03435 -16.26706 -15.70260 -15.21864 -14.67914 -14.37256 -13.56873 -13.35799 -13.18635 -13.05944 -12.72669 -12.50320 -12.21777 -12.06151 -11.66760 -11.50563 -11.16639 -11.05849 -10.99368 -10.69065 -10.60778 -10.46732 -10.18068 -9.59430 -9.38261 -9.10179 -8.47130 -8.31054 -7.79374 -7.33676 -6.06734 -4.14633 2.03312 2.16697 3.28129 3.33332 3.35593 4.09754 4.37023 4.64025 5.20521 5.31765 5.35971 5.48783 5.55624 5.56521 5.65057 5.74392 5.88249 5.99370 6.02864 6.08720 6.14127 6.21824 6.31764 6.38234 6.40803 6.51555 6.61441 6.71544 6.85927 6.98679 7.06926 7.25126 7.40211 7.46487 7.62666 7.75090 7.83656 8.17340 8.36635 8.85791 9.51214 11.00956 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.022319 B = 0.007643 C = 0.007152 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1254.261893 B = 3662.493844 C = 3913.863700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.336 6.336 3 C 0.055 3.945 4 C -0.107 4.107 5 C -0.102 4.102 6 C -0.104 4.104 7 C 0.012 3.988 8 C 0.070 3.930 9 C -0.495 4.495 10 H 0.061 0.939 11 C 0.075 3.925 12 N -0.868 5.868 13 Si 0.888 3.112 14 H -0.276 1.276 15 H -0.287 1.287 16 H -0.276 1.276 17 C -0.200 4.200 18 C -0.160 4.160 19 C -0.102 4.102 20 C -0.110 4.110 21 C -0.104 4.104 22 H 0.041 0.959 23 H 0.084 0.916 24 H 0.042 0.958 25 H 0.063 0.937 26 H 0.061 0.939 27 H 0.058 0.942 28 H 0.120 0.880 29 H 0.260 0.740 30 H 0.067 0.933 31 H 0.081 0.919 32 H 0.082 0.918 33 H 0.067 0.933 34 H 0.120 0.880 35 H 0.059 0.941 36 H 0.062 0.938 37 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.858 -9.256 -0.544 9.311 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.253 6.253 3 C 0.012 3.988 4 C -0.108 4.108 5 C -0.159 4.159 6 C -0.122 4.122 7 C 0.012 3.988 8 C 0.069 3.931 9 C -0.532 4.532 10 H 0.079 0.921 11 C -0.130 4.130 12 N -0.504 5.504 13 Si 0.715 3.285 14 H -0.201 1.201 15 H -0.213 1.213 16 H -0.202 1.202 17 C -0.237 4.237 18 C -0.197 4.197 19 C -0.120 4.120 20 C -0.110 4.110 21 C -0.160 4.160 22 H 0.060 0.940 23 H 0.102 0.898 24 H 0.060 0.940 25 H 0.081 0.919 26 H 0.080 0.920 27 H 0.077 0.923 28 H 0.138 0.862 29 H 0.070 0.930 30 H 0.085 0.915 31 H 0.099 0.901 32 H 0.100 0.900 33 H 0.085 0.915 34 H 0.138 0.862 35 H 0.078 0.922 36 H 0.081 0.919 37 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -0.979 -9.421 -0.420 9.481 hybrid contribution -0.766 1.157 -0.324 1.425 sum -1.745 -8.264 -0.744 8.479 Atomic orbital electron populations 1.22886 0.80724 1.01918 1.00502 1.85963 1.18762 1.26100 1.94435 1.18087 1.01707 0.87240 0.91730 1.20012 1.01228 0.95292 0.94255 1.20597 1.01090 0.99842 0.94325 1.20829 0.99495 0.93159 0.98738 1.19780 0.93980 0.93528 0.91517 1.17674 0.87606 0.90363 0.97435 1.20327 1.16399 1.16555 0.99956 0.92054 1.24962 0.95490 0.97185 0.95317 1.70028 1.28076 1.36816 1.15466 0.86728 0.78794 0.83045 0.79898 1.20148 1.21272 1.20157 1.23023 0.96230 1.00475 1.03999 1.22624 1.05605 1.00359 0.91102 1.20694 0.99468 0.93128 0.98678 1.20000 1.01382 0.95359 0.94265 1.20597 1.01065 1.00180 0.94196 0.94010 0.89776 0.93953 0.91863 0.91975 0.92301 0.86182 0.92974 0.91473 0.90096 0.89954 0.91489 0.86165 0.92206 0.91934 0.91748 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.47 10.76 101.05 1.09 1.55 16 2 O -0.34 -5.74 8.68 -19.42 -0.17 -5.90 16 3 C 0.06 1.06 5.67 -39.21 -0.22 0.84 16 4 C -0.11 -2.11 5.89 -104.47 -0.62 -2.73 16 5 C -0.10 -1.63 9.79 36.01 0.35 -1.28 16 6 C -0.10 -2.27 8.95 -39.60 -0.35 -2.63 16 7 C 0.01 0.29 5.25 -104.60 -0.55 -0.26 16 8 C 0.07 1.69 1.58 -156.81 -0.25 1.45 16 9 C -0.50 -13.20 8.54 -34.44 -0.29 -13.50 16 10 H 0.06 1.62 7.82 -52.49 -0.41 1.21 16 11 C 0.07 2.02 5.40 -17.82 -0.10 1.92 16 12 N -0.87 -24.15 13.03 55.43 0.72 -23.43 16 13 Si 0.89 20.82 29.55 -169.99 -5.02 15.79 16 14 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 15 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 16 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 17 C -0.20 -4.32 9.94 -26.69 -0.27 -4.58 16 18 C -0.16 -3.66 9.12 -26.69 -0.24 -3.91 16 19 C -0.10 -2.19 9.10 -39.61 -0.36 -2.55 16 20 C -0.11 -2.13 5.89 -104.48 -0.62 -2.74 16 21 C -0.10 -1.62 9.79 36.00 0.35 -1.27 16 22 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 23 H 0.08 0.89 8.14 -51.93 -0.42 0.46 16 24 H 0.04 0.57 7.24 -51.93 -0.38 0.20 16 25 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 26 H 0.06 0.95 8.08 -51.93 -0.42 0.53 16 27 H 0.06 0.87 6.31 -51.93 -0.33 0.54 16 28 H 0.12 2.61 6.42 -52.48 -0.34 2.28 16 29 H 0.26 6.99 8.32 -40.82 -0.34 6.65 16 30 H 0.07 1.34 8.14 -51.92 -0.42 0.91 16 31 H 0.08 1.69 8.14 -51.93 -0.42 1.27 16 32 H 0.08 1.99 8.14 -51.93 -0.42 1.57 16 33 H 0.07 1.44 6.56 -51.93 -0.34 1.10 16 34 H 0.12 2.54 8.06 -52.49 -0.42 2.11 16 35 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 36 H 0.06 0.89 8.09 -51.93 -0.42 0.48 16 37 H 0.06 0.94 7.53 -51.93 -0.39 0.55 16 LS Contribution 309.66 15.07 4.67 4.67 Total: -1.00 -28.53 309.66 -7.41 -35.94 By element: Atomic # 1 Polarization: 8.16 SS G_CDS: -5.54 Total: 2.62 kcal Atomic # 6 Polarization: -27.61 SS G_CDS: -2.07 Total: -29.68 kcal Atomic # 7 Polarization: -24.15 SS G_CDS: 0.72 Total: -23.43 kcal Atomic # 8 Polarization: -5.74 SS G_CDS: -0.17 Total: -5.90 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.02 Total: 15.79 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -28.53 -7.41 -35.94 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260171618.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.824 kcal (2) G-P(sol) polarization free energy of solvation -28.527 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.413 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.941 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.117 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds