Wall clock time and date at job start Mon Mar 30 2020 05:50:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35897 * 116.99512 * 2 1 4 4 C 1.38737 * 120.05633 * 90.00712 * 3 2 1 5 5 C 1.50704 * 120.02609 * 359.69448 * 4 3 2 6 6 C 1.38143 * 119.94617 * 179.97438 * 4 3 2 7 7 C 1.38270 * 120.05597 * 0.02562 * 6 4 3 8 8 C 1.50694 * 119.94282 * 179.97438 * 7 6 4 9 9 C 1.50703 * 115.55015 * 234.32095 * 8 7 6 10 10 H 1.08001 * 119.99906 * 263.14086 * 9 8 7 11 11 C 1.37875 * 119.99562 * 83.14142 * 9 8 7 12 12 N 1.31511 * 120.00061 * 353.11347 * 11 9 8 13 13 Si 1.86804 * 119.99590 * 173.11742 * 11 9 8 14 14 H 1.48497 * 109.47153 * 59.99982 * 13 11 9 15 15 H 1.48501 * 109.47055 * 179.97438 * 13 11 9 16 16 H 1.48496 * 109.47067 * 299.99868 * 13 11 9 17 17 C 1.53004 * 117.49942 * 88.65843 * 8 7 6 18 18 C 1.52998 * 117.50297 * 19.99528 * 8 7 6 19 19 C 1.38265 * 120.10850 * 359.95143 * 7 6 4 20 20 C 1.38145 * 120.05874 * 0.05090 * 19 7 6 21 21 C 1.50698 * 120.02862 * 179.97438 * 20 19 7 22 22 H 1.08999 * 109.47629 * 60.00000 * 1 2 3 23 23 H 1.09006 * 109.46884 * 179.97438 * 1 2 3 24 24 H 1.08997 * 109.47077 * 299.99369 * 1 2 3 25 25 H 1.08999 * 109.46762 * 90.00483 * 5 4 3 26 26 H 1.08996 * 109.47045 * 210.00556 * 5 4 3 27 27 H 1.09003 * 109.46735 * 330.00391 * 5 4 3 28 28 H 1.08003 * 119.97106 * 179.97438 * 6 4 3 29 29 H 0.97008 * 119.99688 * 174.94571 * 12 11 9 30 30 H 1.09007 * 117.49593 * 359.97438 * 17 8 7 31 31 H 1.08990 * 117.50074 * 145.01742 * 17 8 7 32 32 H 1.08993 * 117.50095 * 214.98252 * 18 8 7 33 33 H 1.09004 * 117.49489 * 0.02562 * 18 8 7 34 34 H 1.08002 * 119.96969 * 180.02562 * 19 7 6 35 35 H 1.09001 * 109.47127 * 270.02128 * 21 20 19 36 36 H 1.09007 * 109.47145 * 30.01567 * 21 20 19 37 37 H 1.09000 * 109.47551 * 150.01914 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 2.3614 1.8300 1.2008 5 6 2.0142 1.1633 2.5070 6 6 2.9889 3.0607 1.1982 7 6 3.3021 3.6758 0.0001 8 6 3.9861 5.0185 0.0001 9 6 3.2970 6.0991 -0.7927 10 1 3.6132 6.3125 -1.8031 11 6 2.2628 6.8151 -0.2281 12 7 1.7877 6.4677 0.9479 13 14 1.5366 8.2786 -1.1338 14 1 0.9917 7.8313 -2.4407 15 1 0.4454 8.8724 -0.3202 16 1 2.5950 9.2952 -1.3606 17 6 5.5158 5.0321 0.0318 18 6 4.7204 5.4373 1.2754 19 6 2.9891 3.0606 -1.1980 20 6 2.3615 1.8299 -1.2007 21 6 2.0202 1.1604 -2.5069 22 1 -0.3634 0.5138 -0.8899 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5137 0.8900 25 1 2.8441 0.5320 2.8245 26 1 1.8259 1.9242 3.2645 27 1 1.1214 0.5517 2.3767 28 1 3.2344 3.5432 2.1327 29 1 1.1111 7.0138 1.3782 30 1 6.0273 4.0698 0.0530 31 1 6.0236 5.8228 -0.5204 32 1 4.7053 6.4943 1.5408 33 1 4.7091 4.7413 2.1142 34 1 3.2351 3.5429 -2.1325 35 1 1.0225 1.4661 -2.8221 36 1 2.7463 1.4525 -3.2656 37 1 2.0448 0.0783 -2.3779 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260171618.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:50:15 Heat of formation + Delta-G solvation = -15.674304 kcal Electronic energy + Delta-G solvation = -18055.162025 eV Core-core repulsion = 15376.509717 eV Total energy + Delta-G solvation = -2678.652308 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.11797 -39.02645 -37.01726 -34.41187 -33.99521 -31.57164 -28.86746 -27.97431 -27.23736 -26.76616 -23.56835 -23.00221 -21.58012 -20.60168 -18.49437 -18.11563 -17.15690 -16.63193 -16.48985 -16.11673 -15.11817 -14.80986 -14.71188 -14.38887 -14.12232 -13.96335 -13.72360 -13.50489 -13.19919 -12.98154 -12.84000 -12.75015 -12.61866 -12.26180 -12.20363 -12.16297 -11.89854 -11.38179 -10.92940 -10.74240 -10.45225 -10.12669 -9.33734 -8.95787 -8.09313 -6.22687 0.49637 0.58909 1.41591 1.41988 1.49148 2.41846 2.65495 3.14979 3.19489 3.54265 3.97918 4.04368 4.13129 4.43369 4.49339 4.50791 4.57436 4.60302 4.67443 4.70420 4.76027 4.79098 4.81873 4.83576 4.89926 4.95579 5.04301 5.20297 5.24788 5.33179 5.46044 5.60214 5.69356 5.71784 5.84596 6.04585 6.08610 6.41597 6.74419 6.82225 7.45177 8.96958 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.022319 B = 0.007643 C = 0.007152 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1254.261893 B = 3662.493844 C = 3913.863700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.339 6.339 3 C 0.056 3.944 4 C -0.112 4.112 5 C -0.099 4.099 6 C -0.122 4.122 7 C -0.011 4.011 8 C 0.046 3.954 9 C -0.509 4.509 10 H 0.054 0.946 11 C 0.031 3.969 12 N -0.895 5.895 13 Si 0.945 3.055 14 H -0.273 1.273 15 H -0.286 1.286 16 H -0.271 1.271 17 C -0.181 4.181 18 C -0.161 4.161 19 C -0.120 4.120 20 C -0.111 4.111 21 C -0.100 4.100 22 H 0.042 0.958 23 H 0.120 0.880 24 H 0.041 0.959 25 H 0.079 0.921 26 H 0.064 0.936 27 H 0.072 0.928 28 H 0.111 0.889 29 H 0.258 0.742 30 H 0.085 0.915 31 H 0.084 0.916 32 H 0.063 0.937 33 H 0.076 0.924 34 H 0.115 0.885 35 H 0.070 0.930 36 H 0.073 0.927 37 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.542 -10.772 -1.081 10.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.256 6.256 3 C 0.013 3.987 4 C -0.113 4.113 5 C -0.155 4.155 6 C -0.140 4.140 7 C -0.012 4.012 8 C 0.046 3.954 9 C -0.546 4.546 10 H 0.073 0.927 11 C -0.171 4.171 12 N -0.532 5.532 13 Si 0.770 3.230 14 H -0.198 1.198 15 H -0.212 1.212 16 H -0.196 1.196 17 C -0.218 4.218 18 C -0.199 4.199 19 C -0.139 4.139 20 C -0.112 4.112 21 C -0.156 4.156 22 H 0.061 0.939 23 H 0.138 0.862 24 H 0.060 0.940 25 H 0.098 0.902 26 H 0.083 0.917 27 H 0.091 0.909 28 H 0.129 0.871 29 H 0.067 0.933 30 H 0.103 0.897 31 H 0.103 0.897 32 H 0.081 0.919 33 H 0.094 0.906 34 H 0.133 0.867 35 H 0.089 0.911 36 H 0.092 0.908 37 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -1.657 -10.940 -0.967 11.107 hybrid contribution -0.575 1.525 -0.167 1.639 sum -2.231 -9.415 -1.133 9.742 Atomic orbital electron populations 1.23154 0.78516 1.04359 1.00560 1.85938 1.20685 1.24606 1.94410 1.18198 1.01349 0.87661 0.91489 1.20365 1.00095 0.94627 0.96198 1.20641 1.02268 1.00058 0.92548 1.20812 1.00868 0.94376 0.97915 1.19771 0.95254 0.93494 0.92664 1.17769 0.89007 0.90822 0.97852 1.20604 1.16605 1.17484 0.99937 0.92745 1.25615 0.95920 0.99474 0.96045 1.70139 1.28658 1.37659 1.16697 0.85829 0.78077 0.80281 0.78769 1.19845 1.21162 1.19600 1.23029 0.95010 1.01313 1.02431 1.22519 1.06336 0.99364 0.91643 1.20745 1.00787 0.94351 0.97985 1.20363 1.00033 0.94608 0.96193 1.20641 1.01912 1.00557 0.92509 0.93897 0.86193 0.94005 0.90245 0.91731 0.90884 0.87139 0.93260 0.89651 0.89710 0.91879 0.90565 0.86651 0.91114 0.90818 0.90458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.67 10.76 113.37 1.22 1.89 16 2 O -0.34 -10.62 8.68 -92.40 -0.80 -11.42 16 3 C 0.06 2.07 5.67 22.51 0.13 2.20 16 4 C -0.11 -4.31 5.89 -19.77 -0.12 -4.42 16 5 C -0.10 -2.98 9.79 71.24 0.70 -2.28 16 6 C -0.12 -5.34 8.95 22.25 0.20 -5.14 16 7 C -0.01 -0.53 5.25 -19.85 -0.10 -0.64 16 8 C 0.05 2.27 1.58 -53.67 -0.08 2.18 16 9 C -0.51 -27.59 8.54 25.60 0.22 -27.38 16 10 H 0.05 2.93 7.82 -2.91 -0.02 2.91 16 11 C 0.03 1.69 5.40 84.65 0.46 2.15 16 12 N -0.90 -50.69 13.03 21.45 0.28 -50.42 16 13 Si 0.94 43.09 29.55 68.60 2.03 45.12 16 14 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 15 H -0.29 -12.89 7.11 99.48 0.71 -12.18 16 16 H -0.27 -12.01 7.11 99.48 0.71 -11.31 16 17 C -0.18 -7.80 9.94 30.62 0.30 -7.49 16 18 C -0.16 -7.55 9.12 30.62 0.28 -7.27 16 19 C -0.12 -5.22 9.10 22.25 0.20 -5.01 16 20 C -0.11 -4.20 5.89 -19.77 -0.12 -4.31 16 21 C -0.10 -2.89 9.79 71.24 0.70 -2.19 16 22 H 0.04 1.02 8.14 -2.39 -0.02 1.00 16 23 H 0.12 2.02 8.14 -2.38 -0.02 2.00 16 24 H 0.04 1.01 7.24 -2.39 -0.02 0.99 16 25 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 26 H 0.06 1.90 8.08 -2.39 -0.02 1.88 16 27 H 0.07 1.97 6.31 -2.39 -0.02 1.96 16 28 H 0.11 4.93 6.42 -2.91 -0.02 4.91 16 29 H 0.26 14.10 8.32 -92.70 -0.77 13.33 16 30 H 0.09 3.34 8.14 -2.38 -0.02 3.32 16 31 H 0.08 3.54 8.14 -2.39 -0.02 3.52 16 32 H 0.06 3.14 8.14 -2.39 -0.02 3.12 16 33 H 0.08 3.36 6.56 -2.38 -0.02 3.34 16 34 H 0.12 4.94 8.06 -2.91 -0.02 4.92 16 35 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 36 H 0.07 1.96 8.09 -2.38 -0.02 1.94 16 37 H 0.08 2.04 7.53 -2.39 -0.02 2.02 16 Total: -1.00 -60.82 309.66 6.53 -54.29 By element: Atomic # 1 Polarization: 19.10 SS G_CDS: 1.04 Total: 20.15 kcal Atomic # 6 Polarization: -61.70 SS G_CDS: 3.98 Total: -57.72 kcal Atomic # 7 Polarization: -50.69 SS G_CDS: 0.28 Total: -50.42 kcal Atomic # 8 Polarization: -10.62 SS G_CDS: -0.80 Total: -11.42 kcal Atomic # 14 Polarization: 43.09 SS G_CDS: 2.03 Total: 45.12 kcal Total: -60.82 6.53 -54.29 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260171618.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.618 kcal (2) G-P(sol) polarization free energy of solvation -60.822 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.529 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.293 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds