Wall clock time and date at job start Mon Mar 30 2020 05:27:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86800 * 120.00046 * 2 1 4 4 H 1.48500 * 109.46818 * 95.18959 * 3 2 1 5 5 H 1.48507 * 109.46942 * 215.18390 * 3 2 1 6 6 H 1.48494 * 109.47521 * 335.18719 * 3 2 1 7 7 C 1.37884 * 119.99861 * 180.28234 * 2 1 3 8 8 H 1.08002 * 119.99541 * 7.33949 * 7 2 1 9 9 C 1.50691 * 120.00128 * 187.34243 * 7 2 1 10 10 H 1.09006 * 109.47044 * 333.33365 * 9 7 2 11 11 C 1.50700 * 109.47582 * 93.32950 * 9 7 2 12 12 C 1.38262 * 119.99571 * 59.72281 * 11 9 7 13 13 C 1.38211 * 119.99938 * 179.78591 * 12 11 9 14 14 C 1.38260 * 119.99653 * 0.47633 * 13 12 11 15 15 C 1.38207 * 120.00235 * 359.75813 * 14 13 12 16 16 C 1.50702 * 120.00023 * 180.02562 * 15 14 13 17 17 C 1.53002 * 109.47035 * 270.02353 * 16 15 14 18 18 O 1.42902 * 109.46807 * 180.02562 * 17 16 15 19 19 C 1.38212 * 120.00364 * 240.00379 * 11 9 7 20 20 C 1.53002 * 109.47247 * 213.33543 * 9 7 2 21 21 C 1.53000 * 117.49983 * 134.34445 * 20 9 7 22 22 C 1.52996 * 117.50279 * 65.68334 * 20 9 7 23 23 H 0.97009 * 119.99982 * 359.97438 * 1 2 3 24 24 H 1.07998 * 119.99984 * 0.02562 * 12 11 9 25 25 H 1.07997 * 120.00208 * 180.25242 * 13 12 11 26 26 H 1.08001 * 119.99245 * 179.78619 * 14 13 12 27 27 H 1.08996 * 109.47216 * 30.01852 * 16 15 14 28 28 H 1.09002 * 109.46915 * 150.02362 * 16 15 14 29 29 H 1.09007 * 109.47130 * 299.99668 * 17 16 15 30 30 H 1.08993 * 109.47135 * 60.00117 * 17 16 15 31 31 H 0.96702 * 113.99307 * 180.02562 * 18 17 16 32 32 H 1.07998 * 119.99941 * 359.97438 * 19 11 9 33 33 H 1.09004 * 115.54669 * 280.01079 * 20 9 7 34 34 H 1.08993 * 117.50101 * 0.02562 * 21 20 9 35 35 H 1.09007 * 117.49608 * 145.01936 * 21 20 9 36 36 H 1.08996 * 117.49764 * 214.98215 * 22 20 9 37 37 H 1.09003 * 117.49336 * 359.97438 * 22 20 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.6062 1.9830 1.3944 5 1 3.4876 1.4742 -0.8068 6 1 1.3962 2.6819 -0.5875 7 6 2.0045 -1.1941 -0.0059 8 1 1.4710 -2.1250 -0.1300 9 6 3.5021 -1.2004 0.1609 10 1 3.9111 -0.2539 -0.1930 11 6 3.8448 -1.3823 1.6171 12 6 3.4243 -2.5147 2.2898 13 6 3.7423 -2.6837 3.6242 14 6 4.4725 -1.7158 4.2888 15 6 4.8886 -0.5817 3.6175 16 6 5.6849 0.4730 4.3418 17 6 4.7312 1.4982 4.9587 18 8 5.4864 2.4986 5.6450 19 6 4.5743 -0.4146 2.2816 20 6 4.1010 -2.3502 -0.6516 21 6 5.3340 -2.0454 -1.5045 22 6 3.9778 -2.2782 -2.1749 23 1 -0.4850 0.8401 0.0004 24 1 2.8507 -3.2689 1.7717 25 1 3.4174 -3.5701 4.1487 26 1 4.7180 -1.8464 5.3324 27 1 6.2749 0.0055 5.1300 28 1 6.3502 0.9732 3.6380 29 1 4.1411 1.9659 4.1705 30 1 4.0660 0.9980 5.6625 31 1 4.9451 3.1828 6.0620 32 1 4.8992 0.4718 1.7571 33 1 4.0407 -3.3348 -0.1877 34 1 5.7189 -1.0259 -1.4866 35 1 6.0848 -2.8297 -1.6022 36 1 3.8368 -3.2154 -2.7132 37 1 3.4696 -1.4118 -2.5982 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260180829.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:27:31 Heat of formation + Delta-G solvation = -19.467111 kcal Electronic energy + Delta-G solvation = -17672.034475 eV Core-core repulsion = 14993.217698 eV Total energy + Delta-G solvation = -2678.816777 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -39.08941 -37.12807 -36.47376 -33.28498 -32.43959 -31.09607 -28.39768 -27.27914 -23.47372 -23.20693 -21.63978 -21.35164 -20.62217 -18.70646 -17.36653 -16.83355 -15.90936 -15.36601 -14.90100 -14.56799 -14.17970 -14.12565 -13.66666 -13.31783 -12.60412 -12.39601 -12.18796 -12.01457 -11.73408 -11.60760 -11.19172 -10.95662 -10.86401 -10.54828 -10.47149 -10.41827 -9.91317 -9.83728 -9.53181 -9.33908 -8.84366 -8.60945 -8.13905 -7.77295 -6.15299 -4.12969 2.00141 2.12813 3.23684 3.29851 3.31494 4.21195 4.34924 4.55210 4.64255 5.07698 5.17418 5.32014 5.41015 5.46129 5.55794 5.64415 5.70643 5.74000 5.78406 5.92441 6.04214 6.11675 6.18984 6.21492 6.34533 6.41751 6.54987 6.64271 6.80108 6.83559 6.87322 7.12401 7.13709 7.27886 7.53899 7.59832 7.64722 7.76117 8.44837 8.90490 9.46901 10.97345 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.017231 B = 0.008549 C = 0.007140 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1624.542259 B = 3274.323136 C = 3920.559550 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.076 3.924 3 Si 0.864 3.136 4 H -0.272 1.272 5 H -0.264 1.264 6 H -0.288 1.288 7 C -0.494 4.494 8 H 0.078 0.922 9 C 0.064 3.936 10 H 0.046 0.954 11 C -0.027 4.027 12 C -0.102 4.102 13 C -0.123 4.123 14 C -0.142 4.142 15 C -0.092 4.092 16 C -0.073 4.073 17 C 0.078 3.922 18 O -0.579 6.579 19 C -0.131 4.131 20 C -0.113 4.113 21 C -0.203 4.203 22 C -0.169 4.169 23 H 0.264 0.736 24 H 0.119 0.881 25 H 0.112 0.888 26 H 0.109 0.891 27 H 0.073 0.927 28 H 0.073 0.927 29 H 0.049 0.951 30 H 0.048 0.952 31 H 0.377 0.623 32 H 0.107 0.893 33 H 0.091 0.909 34 H 0.084 0.916 35 H 0.080 0.920 36 H 0.081 0.919 37 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.246 -0.402 6.194 11.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.126 4.126 3 Si 0.692 3.308 4 H -0.197 1.197 5 H -0.189 1.189 6 H -0.215 1.215 7 C -0.532 4.532 8 H 0.096 0.904 9 C 0.045 3.955 10 H 0.064 0.936 11 C -0.028 4.028 12 C -0.120 4.120 13 C -0.141 4.141 14 C -0.161 4.161 15 C -0.092 4.092 16 C -0.110 4.110 17 C 0.001 3.999 18 O -0.384 6.384 19 C -0.149 4.149 20 C -0.131 4.131 21 C -0.240 4.240 22 C -0.206 4.206 23 H 0.074 0.926 24 H 0.137 0.863 25 H 0.130 0.870 26 H 0.127 0.873 27 H 0.091 0.909 28 H 0.092 0.908 29 H 0.067 0.933 30 H 0.066 0.934 31 H 0.224 0.776 32 H 0.125 0.875 33 H 0.109 0.891 34 H 0.102 0.898 35 H 0.098 0.902 36 H 0.099 0.901 37 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 9.557 -0.647 5.968 11.286 hybrid contribution -0.297 1.289 0.225 1.342 sum 9.260 0.642 6.193 11.159 Atomic orbital electron populations 1.69897 1.06191 1.26995 1.50010 1.25008 0.94638 0.98728 0.94273 0.87013 0.80328 0.84294 0.79158 1.19710 1.18918 1.21469 1.20784 0.88378 0.94867 1.49145 0.90410 1.18068 0.96971 0.93853 0.86627 0.93636 1.20657 0.91121 0.92248 0.98729 1.20955 0.98994 0.98275 0.93780 1.21031 0.99277 0.98764 0.95072 1.20720 1.01551 0.94864 0.98919 1.19483 1.00053 0.95483 0.94188 1.20378 0.97026 0.94241 0.99357 1.22230 0.93498 0.89059 0.95154 1.86428 1.38254 1.40306 1.73456 1.20909 1.00613 0.99489 0.93926 1.22287 0.98335 1.00030 0.92456 1.23022 0.91563 1.01469 1.07920 1.22744 0.98897 1.02461 0.96457 0.92575 0.86261 0.87028 0.87298 0.90853 0.90810 0.93295 0.93416 0.77616 0.87459 0.89129 0.89765 0.90162 0.90088 0.88748 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.57 13.96 55.43 0.77 -25.80 16 2 C 0.08 2.12 5.47 -17.82 -0.10 2.02 16 3 Si 0.86 21.07 27.33 -169.99 -4.65 16.42 16 4 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 5 H -0.26 -6.15 6.37 56.52 0.36 -5.79 16 6 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 7 C -0.49 -13.15 8.25 -34.44 -0.28 -13.43 16 8 H 0.08 2.25 8.06 -52.49 -0.42 1.83 16 9 C 0.06 1.44 1.74 -92.93 -0.16 1.27 16 10 H 0.05 1.06 4.59 -51.93 -0.24 0.83 16 11 C -0.03 -0.57 4.77 -104.62 -0.50 -1.07 16 12 C -0.10 -2.01 8.67 -39.58 -0.34 -2.36 16 13 C -0.12 -2.12 10.05 -39.58 -0.40 -2.52 16 14 C -0.14 -2.34 9.70 -39.58 -0.38 -2.73 16 15 C -0.09 -1.59 5.13 -104.63 -0.54 -2.13 16 16 C -0.07 -1.08 5.71 -27.88 -0.16 -1.24 16 17 C 0.08 1.11 7.03 37.16 0.26 1.38 16 18 O -0.58 -7.60 13.66 -35.23 -0.48 -8.08 16 19 C -0.13 -2.60 9.33 -39.58 -0.37 -2.97 16 20 C -0.11 -2.23 4.92 -90.62 -0.45 -2.67 16 21 C -0.20 -3.48 10.18 -26.69 -0.27 -3.76 16 22 C -0.17 -3.11 10.02 -26.70 -0.27 -3.37 16 23 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 24 H 0.12 2.34 7.81 -52.49 -0.41 1.93 16 25 H 0.11 1.61 8.06 -52.49 -0.42 1.19 16 26 H 0.11 1.50 8.06 -52.49 -0.42 1.08 16 27 H 0.07 1.00 8.09 -51.93 -0.42 0.58 16 28 H 0.07 1.09 8.09 -51.93 -0.42 0.67 16 29 H 0.05 0.75 8.14 -51.92 -0.42 0.33 16 30 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.38 3.17 9.12 45.56 0.42 3.59 16 32 H 0.11 2.09 7.95 -52.49 -0.42 1.67 16 33 H 0.09 1.71 7.44 -51.93 -0.39 1.33 16 34 H 0.08 1.45 8.08 -51.93 -0.42 1.03 16 35 H 0.08 1.21 8.14 -51.92 -0.42 0.78 16 36 H 0.08 1.33 8.14 -51.93 -0.42 0.90 16 37 H 0.09 1.87 8.14 -51.93 -0.42 1.45 16 LS Contribution 310.87 15.07 4.68 4.68 Total: -1.00 -29.93 310.87 -8.48 -38.41 By element: Atomic # 1 Polarization: 12.80 SS G_CDS: -4.85 Total: 7.94 kcal Atomic # 6 Polarization: -29.62 SS G_CDS: -3.96 Total: -33.58 kcal Atomic # 7 Polarization: -26.57 SS G_CDS: 0.77 Total: -25.80 kcal Atomic # 8 Polarization: -7.60 SS G_CDS: -0.48 Total: -8.08 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -4.65 Total: 16.42 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -29.93 -8.48 -38.41 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260180829.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.942 kcal (2) G-P(sol) polarization free energy of solvation -29.928 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.481 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.409 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds