Wall clock time and date at job start Mon Mar 30 2020 05:27:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86800 * 120.00046 * 2 1 4 4 H 1.48500 * 109.46818 * 95.18959 * 3 2 1 5 5 H 1.48507 * 109.46942 * 215.18390 * 3 2 1 6 6 H 1.48494 * 109.47521 * 335.18719 * 3 2 1 7 7 C 1.37884 * 119.99861 * 180.28234 * 2 1 3 8 8 H 1.08002 * 119.99541 * 7.33949 * 7 2 1 9 9 C 1.50691 * 120.00128 * 187.34243 * 7 2 1 10 10 H 1.09006 * 109.47044 * 333.33365 * 9 7 2 11 11 C 1.50700 * 109.47582 * 93.32950 * 9 7 2 12 12 C 1.38262 * 119.99571 * 59.72281 * 11 9 7 13 13 C 1.38211 * 119.99938 * 179.78591 * 12 11 9 14 14 C 1.38260 * 119.99653 * 0.47633 * 13 12 11 15 15 C 1.38207 * 120.00235 * 359.75813 * 14 13 12 16 16 C 1.50702 * 120.00023 * 180.02562 * 15 14 13 17 17 C 1.53002 * 109.47035 * 270.02353 * 16 15 14 18 18 O 1.42902 * 109.46807 * 180.02562 * 17 16 15 19 19 C 1.38212 * 120.00364 * 240.00379 * 11 9 7 20 20 C 1.53002 * 109.47247 * 213.33543 * 9 7 2 21 21 C 1.53000 * 117.49983 * 134.34445 * 20 9 7 22 22 C 1.52996 * 117.50279 * 65.68334 * 20 9 7 23 23 H 0.97009 * 119.99982 * 359.97438 * 1 2 3 24 24 H 1.07998 * 119.99984 * 0.02562 * 12 11 9 25 25 H 1.07997 * 120.00208 * 180.25242 * 13 12 11 26 26 H 1.08001 * 119.99245 * 179.78619 * 14 13 12 27 27 H 1.08996 * 109.47216 * 30.01852 * 16 15 14 28 28 H 1.09002 * 109.46915 * 150.02362 * 16 15 14 29 29 H 1.09007 * 109.47130 * 299.99668 * 17 16 15 30 30 H 1.08993 * 109.47135 * 60.00117 * 17 16 15 31 31 H 0.96702 * 113.99307 * 180.02562 * 18 17 16 32 32 H 1.07998 * 119.99941 * 359.97438 * 19 11 9 33 33 H 1.09004 * 115.54669 * 280.01079 * 20 9 7 34 34 H 1.08993 * 117.50101 * 0.02562 * 21 20 9 35 35 H 1.09007 * 117.49608 * 145.01936 * 21 20 9 36 36 H 1.08996 * 117.49764 * 214.98215 * 22 20 9 37 37 H 1.09003 * 117.49336 * 359.97438 * 22 20 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.6062 1.9830 1.3944 5 1 3.4876 1.4742 -0.8068 6 1 1.3962 2.6819 -0.5875 7 6 2.0045 -1.1941 -0.0059 8 1 1.4710 -2.1250 -0.1300 9 6 3.5021 -1.2004 0.1609 10 1 3.9111 -0.2539 -0.1930 11 6 3.8448 -1.3823 1.6171 12 6 3.4243 -2.5147 2.2898 13 6 3.7423 -2.6837 3.6242 14 6 4.4725 -1.7158 4.2888 15 6 4.8886 -0.5817 3.6175 16 6 5.6849 0.4730 4.3418 17 6 4.7312 1.4982 4.9587 18 8 5.4864 2.4986 5.6450 19 6 4.5743 -0.4146 2.2816 20 6 4.1010 -2.3502 -0.6516 21 6 5.3340 -2.0454 -1.5045 22 6 3.9778 -2.2782 -2.1749 23 1 -0.4850 0.8401 0.0004 24 1 2.8507 -3.2689 1.7717 25 1 3.4174 -3.5701 4.1487 26 1 4.7180 -1.8464 5.3324 27 1 6.2749 0.0055 5.1300 28 1 6.3502 0.9732 3.6380 29 1 4.1411 1.9659 4.1705 30 1 4.0660 0.9980 5.6625 31 1 4.9451 3.1828 6.0620 32 1 4.8992 0.4718 1.7571 33 1 4.0407 -3.3348 -0.1877 34 1 5.7189 -1.0259 -1.4866 35 1 6.0848 -2.8297 -1.6022 36 1 3.8368 -3.2154 -2.7132 37 1 3.4696 -1.4118 -2.5982 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260180829.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:27:30 Heat of formation + Delta-G solvation = -37.331926 kcal Electronic energy + Delta-G solvation = -17672.809151 eV Core-core repulsion = 14993.217698 eV Total energy + Delta-G solvation = -2679.591453 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.53255 -38.46857 -37.69359 -35.00169 -34.02139 -32.69428 -29.86291 -28.83534 -25.33316 -24.44704 -23.07114 -22.77256 -22.03687 -20.30305 -18.91416 -18.38626 -17.31642 -16.62545 -16.53942 -16.24341 -15.58690 -15.25290 -15.04793 -14.97513 -14.42810 -13.81980 -13.80177 -13.52229 -13.33575 -12.86506 -12.83024 -12.40867 -12.28379 -12.11507 -11.99261 -11.91787 -11.68419 -11.27136 -11.00069 -10.94682 -10.70510 -10.45003 -9.56829 -9.26586 -8.30127 -6.29747 0.57455 0.68994 1.28555 1.29127 1.36728 2.30530 2.91507 3.07397 3.17787 3.36783 3.89182 4.03042 4.11119 4.21278 4.23407 4.28740 4.31508 4.37292 4.52737 4.58489 4.68489 4.70379 4.81535 4.86379 5.00150 5.02143 5.05189 5.16712 5.33299 5.37072 5.39524 5.54776 5.61681 5.72743 5.80643 5.99273 6.28942 6.37025 6.74723 6.81194 7.32830 8.86354 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.017231 B = 0.008549 C = 0.007140 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1624.542259 B = 3274.323136 C = 3920.559550 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.945 5.945 2 C 0.020 3.980 3 Si 0.918 3.082 4 H -0.264 1.264 5 H -0.248 1.248 6 H -0.289 1.289 7 C -0.483 4.483 8 H 0.039 0.961 9 C 0.067 3.933 10 H 0.036 0.964 11 C -0.051 4.051 12 C -0.124 4.124 13 C -0.119 4.119 14 C -0.135 4.135 15 C -0.088 4.088 16 C -0.071 4.071 17 C 0.082 3.918 18 O -0.587 6.587 19 C -0.149 4.149 20 C -0.137 4.137 21 C -0.174 4.174 22 C -0.175 4.175 23 H 0.264 0.736 24 H 0.107 0.893 25 H 0.142 0.858 26 H 0.146 0.854 27 H 0.093 0.907 28 H 0.072 0.928 29 H 0.031 0.969 30 H 0.058 0.942 31 H 0.398 0.602 32 H 0.104 0.896 33 H 0.095 0.905 34 H 0.085 0.915 35 H 0.110 0.890 36 H 0.101 0.899 37 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.718 -0.298 7.887 14.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.585 5.585 2 C -0.178 4.178 3 Si 0.744 3.256 4 H -0.189 1.189 5 H -0.173 1.173 6 H -0.216 1.216 7 C -0.521 4.521 8 H 0.057 0.943 9 C 0.049 3.951 10 H 0.055 0.945 11 C -0.052 4.052 12 C -0.142 4.142 13 C -0.137 4.137 14 C -0.153 4.153 15 C -0.088 4.088 16 C -0.108 4.108 17 C 0.004 3.996 18 O -0.396 6.396 19 C -0.167 4.167 20 C -0.156 4.156 21 C -0.211 4.211 22 C -0.212 4.212 23 H 0.073 0.927 24 H 0.125 0.875 25 H 0.160 0.840 26 H 0.163 0.837 27 H 0.111 0.889 28 H 0.090 0.910 29 H 0.050 0.950 30 H 0.076 0.924 31 H 0.247 0.753 32 H 0.122 0.878 33 H 0.113 0.887 34 H 0.103 0.897 35 H 0.129 0.871 36 H 0.120 0.880 37 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 12.052 -0.538 7.666 14.294 hybrid contribution -1.038 1.163 -0.228 1.576 sum 11.014 0.625 7.438 13.305 Atomic orbital electron populations 1.70038 1.07878 1.27682 1.52888 1.25734 0.95243 1.02155 0.94624 0.86134 0.79585 0.80240 0.79666 1.18948 1.17262 1.21568 1.20965 0.90759 0.93082 1.47322 0.94294 1.17922 0.94030 0.94551 0.88628 0.94545 1.20497 0.93246 0.93712 0.97732 1.21003 0.99875 0.98000 0.95296 1.21364 0.98365 0.99987 0.93941 1.21147 0.99925 0.93726 1.00470 1.19754 0.99365 0.96395 0.93301 1.20388 0.96895 0.93863 0.99686 1.22090 0.93259 0.89207 0.95018 1.86377 1.38951 1.40818 1.73456 1.20998 1.01324 0.99089 0.95275 1.22217 1.01117 0.99326 0.92901 1.23076 0.91045 1.02509 1.04480 1.22788 1.00131 1.02722 0.95608 0.92732 0.87462 0.84047 0.83659 0.88855 0.90966 0.95044 0.92372 0.75255 0.87782 0.88724 0.89680 0.87142 0.88041 0.90781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.53 13.96 21.45 0.30 -58.23 16 2 C 0.02 1.14 5.47 84.66 0.46 1.60 16 3 Si 0.92 44.24 27.33 68.60 1.88 46.11 16 4 H -0.26 -12.32 7.11 99.48 0.71 -11.62 16 5 H -0.25 -11.18 6.37 99.48 0.63 -10.55 16 6 H -0.29 -13.85 7.11 99.48 0.71 -13.14 16 7 C -0.48 -26.76 8.25 25.60 0.21 -26.55 16 8 H 0.04 2.39 8.06 -2.91 -0.02 2.37 16 9 C 0.07 3.09 1.74 -12.29 -0.02 3.07 16 10 H 0.04 1.71 4.59 -2.38 -0.01 1.70 16 11 C -0.05 -2.17 4.77 -19.86 -0.09 -2.27 16 12 C -0.12 -4.85 8.67 22.27 0.19 -4.66 16 13 C -0.12 -3.79 10.05 22.27 0.22 -3.57 16 14 C -0.13 -3.95 9.70 22.27 0.22 -3.73 16 15 C -0.09 -2.82 5.13 -19.87 -0.10 -2.93 16 16 C -0.07 -1.89 5.71 29.85 0.17 -1.72 16 17 C 0.08 2.11 7.03 71.98 0.51 2.61 16 18 O -0.59 -13.62 13.66 -148.98 -2.04 -15.65 16 19 C -0.15 -5.73 9.33 22.27 0.21 -5.52 16 20 C -0.14 -5.41 4.92 -10.79 -0.05 -5.46 16 21 C -0.17 -5.65 10.18 30.62 0.31 -5.34 16 22 C -0.18 -6.38 10.02 30.62 0.31 -6.07 16 23 H 0.26 15.43 8.31 -92.70 -0.77 14.66 16 24 H 0.11 4.34 7.81 -2.91 -0.02 4.32 16 25 H 0.14 3.60 8.06 -2.91 -0.02 3.58 16 26 H 0.15 3.23 8.06 -2.91 -0.02 3.20 16 27 H 0.09 2.13 8.09 -2.39 -0.02 2.11 16 28 H 0.07 1.95 8.09 -2.39 -0.02 1.93 16 29 H 0.03 0.91 8.14 -2.38 -0.02 0.89 16 30 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 31 H 0.40 5.50 9.12 -74.06 -0.68 4.83 16 32 H 0.10 3.97 7.95 -2.91 -0.02 3.95 16 33 H 0.09 3.60 7.44 -2.39 -0.02 3.58 16 34 H 0.08 2.75 8.08 -2.39 -0.02 2.73 16 35 H 0.11 2.94 8.14 -2.38 -0.02 2.92 16 36 H 0.10 3.22 8.14 -2.39 -0.02 3.20 16 37 H 0.07 2.98 8.14 -2.39 -0.02 2.96 16 Total: -1.00 -66.31 310.87 2.98 -63.33 By element: Atomic # 1 Polarization: 24.67 SS G_CDS: 0.30 Total: 24.97 kcal Atomic # 6 Polarization: -63.07 SS G_CDS: 2.54 Total: -60.53 kcal Atomic # 7 Polarization: -58.53 SS G_CDS: 0.30 Total: -58.23 kcal Atomic # 8 Polarization: -13.62 SS G_CDS: -2.04 Total: -15.65 kcal Atomic # 14 Polarization: 44.24 SS G_CDS: 1.88 Total: 46.11 kcal Total: -66.31 2.98 -63.33 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260180829.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.000 kcal (2) G-P(sol) polarization free energy of solvation -66.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.332 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.332 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds