Wall clock time and date at job start Mon Mar 30 2020 05:46:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38290 * 119.94613 * 2 1 4 4 C 1.38116 * 120.05760 * 179.97438 * 3 2 1 5 5 C 1.50702 * 120.03134 * 180.02562 * 4 3 2 6 6 C 1.38758 * 119.94445 * 0.28025 * 4 3 2 7 7 O 1.35894 * 120.05792 * 179.72141 * 6 4 3 8 8 C 1.38709 * 119.88519 * 359.42573 * 6 4 3 9 9 C 1.50707 * 120.02933 * 180.30287 * 8 6 4 10 10 H 1.08996 * 109.46612 * 0.29239 * 9 8 6 11 11 C 1.50697 * 109.47010 * 240.29610 * 9 8 6 12 12 H 1.08001 * 120.00070 * 275.55618 * 11 9 8 13 13 C 1.37875 * 120.00290 * 95.55164 * 11 9 8 14 14 N 1.31512 * 120.00109 * 6.21127 * 13 11 9 15 15 Si 1.86801 * 120.00003 * 186.20680 * 13 11 9 16 16 H 1.48503 * 109.46832 * 60.00725 * 15 13 11 17 17 H 1.48505 * 109.47056 * 179.97438 * 15 13 11 18 18 H 1.48499 * 109.47594 * 300.00425 * 15 13 11 19 19 C 1.52996 * 109.47272 * 120.29370 * 9 8 6 20 20 C 1.53005 * 117.49633 * 253.93580 * 19 9 8 21 21 C 1.52998 * 117.49666 * 185.31404 * 19 9 8 22 22 C 1.38167 * 119.94618 * 0.59335 * 8 6 4 23 23 H 1.09005 * 109.47291 * 89.99473 * 1 2 3 24 24 H 1.08995 * 109.47452 * 209.99712 * 1 2 3 25 25 H 1.09001 * 109.47070 * 329.99881 * 1 2 3 26 26 H 1.07999 * 119.96762 * 359.96035 * 3 2 1 27 27 H 1.09000 * 109.47205 * 90.00151 * 5 4 3 28 28 H 1.09001 * 109.46761 * 329.99924 * 5 4 3 29 29 H 1.09000 * 109.47287 * 210.00383 * 5 4 3 30 30 H 0.96701 * 114.00158 * 89.99659 * 7 6 4 31 31 H 0.96997 * 120.00614 * 179.97438 * 14 13 11 32 32 H 1.08994 * 115.55296 * 39.63912 * 19 9 8 33 33 H 1.08995 * 117.49976 * 359.97438 * 20 19 9 34 34 H 1.08996 * 117.49806 * 145.02455 * 20 19 9 35 35 H 1.09003 * 117.49637 * 214.97569 * 21 19 9 36 36 H 1.09001 * 117.50177 * 359.97438 * 21 19 9 37 37 H 1.08002 * 119.97475 * 179.70641 * 22 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1973 1.1983 0.0000 4 6 3.5784 1.2010 0.0005 5 6 4.3301 2.5071 0.0011 6 6 4.2734 0.0000 -0.0048 7 8 5.6323 -0.0001 -0.0100 8 6 3.5787 -1.2006 0.0014 9 6 4.3302 -2.5069 0.0025 10 1 5.4021 -2.3092 0.0032 11 6 3.9659 -3.2970 -1.2279 12 1 3.0806 -3.9156 -1.2299 13 6 4.7627 -3.2303 -2.3511 14 7 5.9031 -2.5765 -2.3105 15 14 4.2226 -4.0688 -3.9306 16 1 2.9263 -3.4973 -4.3760 17 1 5.2472 -3.8494 -4.9829 18 1 4.0645 -5.5254 -3.6889 19 6 3.9585 -3.3081 1.2518 20 6 4.9964 -3.3902 2.3730 21 6 4.7121 -4.6158 1.5024 22 6 2.1970 -1.1979 0.0004 23 1 -0.3634 0.0001 -1.0277 24 1 -0.3634 -0.8899 0.5138 25 1 -0.3633 0.8900 0.5139 26 1 1.6559 2.1328 -0.0006 27 1 4.5110 2.8218 1.0289 28 1 3.7401 3.2660 -0.5128 29 1 5.2829 2.3783 -0.5124 30 1 6.0290 -0.0020 0.8719 31 1 6.4639 -2.5298 -3.1005 32 1 2.9081 -3.2694 1.5398 33 1 5.9440 -2.8738 2.2205 34 1 4.6287 -3.4055 3.3990 35 1 4.1574 -5.4374 1.9557 36 1 5.4723 -4.9056 0.7770 37 1 1.6556 -2.1325 0.0005 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260203762.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:46:28 Heat of formation + Delta-G solvation = -14.093827 kcal Electronic energy + Delta-G solvation = -18144.295266 eV Core-core repulsion = 15465.711492 eV Total energy + Delta-G solvation = -2678.583774 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.32072 -36.62173 -35.99714 -33.08836 -32.20538 -31.19327 -27.70133 -26.31650 -25.41487 -23.63536 -21.52136 -20.87368 -20.01099 -18.74421 -17.38905 -16.29974 -15.24950 -14.87768 -14.72255 -14.42007 -13.58388 -13.23685 -13.10849 -12.90240 -12.55529 -12.35387 -12.12322 -11.99566 -11.70426 -11.24453 -11.00770 -10.90000 -10.73787 -10.69382 -10.47339 -10.44750 -9.92142 -9.61793 -9.32302 -9.08009 -8.65711 -8.38188 -7.68601 -7.40022 -5.95781 -3.99424 2.08532 2.26509 3.34249 3.39110 3.41586 4.40316 4.49862 4.81342 5.15532 5.34608 5.37185 5.49628 5.60781 5.75263 5.82194 5.87675 5.91909 5.95364 6.00025 6.02304 6.21708 6.31050 6.31208 6.32516 6.51879 6.63957 6.80083 6.81413 6.98550 7.01594 7.15646 7.19736 7.41005 7.56291 7.78182 7.87591 8.01617 8.40277 8.64957 9.06547 9.61476 11.10011 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.015989 B = 0.009371 C = 0.008550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1750.790505 B = 2987.358540 C = 3273.977132 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.106 4.106 3 C -0.139 4.139 4 C -0.120 4.120 5 C -0.104 4.104 6 C 0.094 3.906 7 O -0.474 6.474 8 C -0.036 4.036 9 C 0.091 3.909 10 H 0.081 0.919 11 C -0.504 4.504 12 H 0.054 0.946 13 C 0.069 3.931 14 N -0.870 5.870 15 Si 0.885 3.115 16 H -0.277 1.277 17 H -0.288 1.288 18 H -0.277 1.277 19 C -0.119 4.119 20 C -0.202 4.202 21 C -0.170 4.170 22 C -0.107 4.107 23 H 0.062 0.938 24 H 0.060 0.940 25 H 0.056 0.944 26 H 0.108 0.892 27 H 0.058 0.942 28 H 0.056 0.944 29 H 0.069 0.931 30 H 0.368 0.632 31 H 0.261 0.739 32 H 0.081 0.919 33 H 0.086 0.914 34 H 0.074 0.926 35 H 0.075 0.925 36 H 0.095 0.905 37 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.676 5.268 7.073 9.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.106 4.106 3 C -0.158 4.158 4 C -0.121 4.121 5 C -0.161 4.161 6 C 0.049 3.951 7 O -0.281 6.281 8 C -0.037 4.037 9 C 0.073 3.927 10 H 0.100 0.900 11 C -0.542 4.542 12 H 0.072 0.928 13 C -0.135 4.135 14 N -0.506 5.506 15 Si 0.712 3.288 16 H -0.203 1.203 17 H -0.214 1.214 18 H -0.202 1.202 19 C -0.137 4.137 20 C -0.240 4.240 21 C -0.207 4.207 22 C -0.125 4.125 23 H 0.081 0.919 24 H 0.079 0.921 25 H 0.075 0.925 26 H 0.126 0.874 27 H 0.077 0.923 28 H 0.075 0.925 29 H 0.088 0.912 30 H 0.221 0.779 31 H 0.071 0.929 32 H 0.099 0.901 33 H 0.104 0.896 34 H 0.093 0.907 35 H 0.093 0.907 36 H 0.114 0.886 37 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -4.563 5.323 6.326 9.443 hybrid contribution -0.271 -0.437 -0.575 0.772 sum -4.834 4.885 5.751 8.961 Atomic orbital electron populations 1.20676 0.92300 1.01644 1.01552 1.19773 0.95226 0.93481 1.02121 1.20418 0.92828 0.96771 1.05752 1.20064 0.93939 0.94792 1.03291 1.20580 1.00372 0.93942 1.01163 1.18156 0.83068 0.91123 1.02725 1.84981 1.15756 1.96176 1.31166 1.21052 0.93680 0.96732 0.92212 1.17645 0.98006 0.86690 0.90385 0.90045 1.20770 1.09931 1.26663 0.96814 0.92784 1.24979 0.94697 0.95098 0.98686 1.69947 1.10482 1.41045 1.29114 0.86781 0.78493 0.79935 0.83559 1.20268 1.21353 1.20245 1.22528 0.94960 0.99477 0.96742 1.22977 1.01579 1.04176 0.95221 1.22691 1.04377 0.91159 1.02431 1.20714 0.93895 0.96533 1.01382 0.91948 0.92119 0.92517 0.87374 0.92342 0.92529 0.91231 0.77947 0.92933 0.90078 0.89593 0.90698 0.90693 0.88614 0.86616 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.49 10.01 36.00 0.36 -1.13 16 2 C -0.11 -1.93 5.88 -104.60 -0.62 -2.55 16 3 C -0.14 -2.48 9.35 -39.61 -0.37 -2.85 16 4 C -0.12 -2.28 5.89 -104.47 -0.62 -2.89 16 5 C -0.10 -1.60 9.80 36.01 0.35 -1.24 16 6 C 0.09 2.03 6.65 -39.22 -0.26 1.77 16 7 O -0.47 -10.04 11.31 -19.41 -0.22 -10.26 16 8 C -0.04 -0.81 4.78 -104.47 -0.50 -1.31 16 9 C 0.09 2.20 2.20 -92.92 -0.20 1.99 16 10 H 0.08 2.17 5.87 -51.93 -0.30 1.87 16 11 C -0.50 -13.53 7.71 -34.44 -0.27 -13.79 16 12 H 0.05 1.45 7.82 -52.49 -0.41 1.04 16 13 C 0.07 1.93 5.45 -17.82 -0.10 1.83 16 14 N -0.87 -25.18 12.76 55.43 0.71 -24.47 16 15 Si 0.88 21.58 29.54 -169.99 -5.02 16.56 16 16 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 17 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 18 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 19 C -0.12 -2.46 4.93 -90.62 -0.45 -2.91 16 20 C -0.20 -3.66 10.18 -26.73 -0.27 -3.93 16 21 C -0.17 -3.29 10.01 -26.73 -0.27 -3.56 16 22 C -0.11 -2.23 8.32 -39.60 -0.33 -2.56 16 23 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 24 H 0.06 0.80 8.08 -51.93 -0.42 0.38 16 25 H 0.06 0.69 8.08 -51.93 -0.42 0.27 16 26 H 0.11 1.63 8.06 -52.49 -0.42 1.20 16 27 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 28 H 0.06 0.77 8.09 -51.93 -0.42 0.35 16 29 H 0.07 1.13 7.52 -51.93 -0.39 0.74 16 30 H 0.37 6.00 9.06 45.56 0.41 6.41 16 31 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 32 H 0.08 1.62 7.42 -51.93 -0.39 1.23 16 33 H 0.09 1.56 8.08 -51.93 -0.42 1.14 16 34 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 35 H 0.07 1.29 8.14 -51.93 -0.42 0.86 16 36 H 0.10 2.04 8.14 -51.93 -0.42 1.61 16 37 H 0.12 2.36 7.80 -52.49 -0.41 1.95 16 LS Contribution 311.01 15.07 4.69 4.69 Total: -1.00 -30.01 311.01 -8.22 -38.23 By element: Atomic # 1 Polarization: 13.23 SS G_CDS: -4.84 Total: 8.39 kcal Atomic # 6 Polarization: -29.60 SS G_CDS: -3.53 Total: -33.13 kcal Atomic # 7 Polarization: -25.18 SS G_CDS: 0.71 Total: -24.47 kcal Atomic # 8 Polarization: -10.04 SS G_CDS: -0.22 Total: -10.26 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -30.01 -8.22 -38.23 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260203762.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.132 kcal (2) G-P(sol) polarization free energy of solvation -30.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.217 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.226 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.094 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds