Wall clock time and date at job start Mon Mar 30 2020 05:46:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38290 * 119.94613 * 2 1 4 4 C 1.38116 * 120.05760 * 179.97438 * 3 2 1 5 5 C 1.50702 * 120.03134 * 180.02562 * 4 3 2 6 6 C 1.38758 * 119.94445 * 0.28025 * 4 3 2 7 7 O 1.35894 * 120.05792 * 179.72141 * 6 4 3 8 8 C 1.38709 * 119.88519 * 359.42573 * 6 4 3 9 9 C 1.50707 * 120.02933 * 180.30287 * 8 6 4 10 10 H 1.08996 * 109.46612 * 0.29239 * 9 8 6 11 11 C 1.50697 * 109.47010 * 240.29610 * 9 8 6 12 12 H 1.08001 * 120.00070 * 275.55618 * 11 9 8 13 13 C 1.37875 * 120.00290 * 95.55164 * 11 9 8 14 14 N 1.31512 * 120.00109 * 6.21127 * 13 11 9 15 15 Si 1.86801 * 120.00003 * 186.20680 * 13 11 9 16 16 H 1.48503 * 109.46832 * 60.00725 * 15 13 11 17 17 H 1.48505 * 109.47056 * 179.97438 * 15 13 11 18 18 H 1.48499 * 109.47594 * 300.00425 * 15 13 11 19 19 C 1.52996 * 109.47272 * 120.29370 * 9 8 6 20 20 C 1.53005 * 117.49633 * 253.93580 * 19 9 8 21 21 C 1.52998 * 117.49666 * 185.31404 * 19 9 8 22 22 C 1.38167 * 119.94618 * 0.59335 * 8 6 4 23 23 H 1.09005 * 109.47291 * 89.99473 * 1 2 3 24 24 H 1.08995 * 109.47452 * 209.99712 * 1 2 3 25 25 H 1.09001 * 109.47070 * 329.99881 * 1 2 3 26 26 H 1.07999 * 119.96762 * 359.96035 * 3 2 1 27 27 H 1.09000 * 109.47205 * 90.00151 * 5 4 3 28 28 H 1.09001 * 109.46761 * 329.99924 * 5 4 3 29 29 H 1.09000 * 109.47287 * 210.00383 * 5 4 3 30 30 H 0.96701 * 114.00158 * 89.99659 * 7 6 4 31 31 H 0.96997 * 120.00614 * 179.97438 * 14 13 11 32 32 H 1.08994 * 115.55296 * 39.63912 * 19 9 8 33 33 H 1.08995 * 117.49976 * 359.97438 * 20 19 9 34 34 H 1.08996 * 117.49806 * 145.02455 * 20 19 9 35 35 H 1.09003 * 117.49637 * 214.97569 * 21 19 9 36 36 H 1.09001 * 117.50177 * 359.97438 * 21 19 9 37 37 H 1.08002 * 119.97475 * 179.70641 * 22 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1973 1.1983 0.0000 4 6 3.5784 1.2010 0.0005 5 6 4.3301 2.5071 0.0011 6 6 4.2734 0.0000 -0.0048 7 8 5.6323 -0.0001 -0.0100 8 6 3.5787 -1.2006 0.0014 9 6 4.3302 -2.5069 0.0025 10 1 5.4021 -2.3092 0.0032 11 6 3.9659 -3.2970 -1.2279 12 1 3.0806 -3.9156 -1.2299 13 6 4.7627 -3.2303 -2.3511 14 7 5.9031 -2.5765 -2.3105 15 14 4.2226 -4.0688 -3.9306 16 1 2.9263 -3.4973 -4.3760 17 1 5.2472 -3.8494 -4.9829 18 1 4.0645 -5.5254 -3.6889 19 6 3.9585 -3.3081 1.2518 20 6 4.9964 -3.3902 2.3730 21 6 4.7121 -4.6158 1.5024 22 6 2.1970 -1.1979 0.0004 23 1 -0.3634 0.0001 -1.0277 24 1 -0.3634 -0.8899 0.5138 25 1 -0.3633 0.8900 0.5139 26 1 1.6559 2.1328 -0.0006 27 1 4.5110 2.8218 1.0289 28 1 3.7401 3.2660 -0.5128 29 1 5.2829 2.3783 -0.5124 30 1 6.0290 -0.0020 0.8719 31 1 6.4639 -2.5298 -3.1005 32 1 2.9081 -3.2694 1.5398 33 1 5.9440 -2.8738 2.2205 34 1 4.6287 -3.4055 3.3990 35 1 4.1574 -5.4374 1.9557 36 1 5.4723 -4.9056 0.7770 37 1 1.6556 -2.1325 0.0005 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260203762.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:46:28 Heat of formation + Delta-G solvation = -30.849190 kcal Electronic energy + Delta-G solvation = -18145.021833 eV Core-core repulsion = 15465.711492 eV Total energy + Delta-G solvation = -2679.310341 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.85277 -38.23234 -37.52875 -34.93804 -33.69494 -32.81638 -29.34070 -27.75789 -26.82567 -25.55448 -23.05168 -22.41312 -21.45902 -20.45338 -18.96730 -18.27007 -16.81854 -16.60044 -16.39352 -16.07677 -14.98450 -14.83668 -14.58515 -14.21630 -14.07911 -13.80530 -13.55596 -13.37601 -13.21935 -12.98634 -12.85869 -12.50141 -12.24755 -12.24242 -12.20932 -11.96811 -11.63917 -11.18700 -11.01204 -10.92464 -10.42062 -10.33806 -9.21062 -8.93442 -8.04369 -6.12957 0.58575 0.74828 1.37576 1.39416 1.45564 2.42332 2.94783 3.19623 3.30160 3.68366 4.03020 4.08326 4.20467 4.30021 4.38479 4.49653 4.54688 4.66867 4.80625 4.84817 4.86353 4.91488 4.92348 5.04232 5.12233 5.16241 5.22415 5.39041 5.44918 5.46015 5.56144 5.68404 5.72938 5.86323 5.97544 6.13101 6.29238 6.44494 6.99299 7.18281 7.49685 8.99640 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.015989 B = 0.009371 C = 0.008550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1750.790505 B = 2987.358540 C = 3273.977132 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C -0.104 4.104 3 C -0.138 4.138 4 C -0.125 4.125 5 C -0.099 4.099 6 C 0.067 3.933 7 O -0.493 6.493 8 C -0.065 4.065 9 C 0.096 3.904 10 H 0.046 0.954 11 C -0.508 4.508 12 H 0.047 0.953 13 C 0.018 3.982 14 N -0.904 5.904 15 Si 0.938 3.062 16 H -0.276 1.276 17 H -0.288 1.288 18 H -0.268 1.268 19 C -0.137 4.137 20 C -0.177 4.177 21 C -0.172 4.172 22 C -0.126 4.126 23 H 0.069 0.931 24 H 0.067 0.933 25 H 0.083 0.917 26 H 0.145 0.855 27 H 0.082 0.918 28 H 0.078 0.922 29 H 0.054 0.946 30 H 0.382 0.618 31 H 0.256 0.744 32 H 0.089 0.911 33 H 0.079 0.921 34 H 0.108 0.892 35 H 0.101 0.899 36 H 0.067 0.933 37 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.634 6.461 8.026 12.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.104 4.104 3 C -0.155 4.155 4 C -0.125 4.125 5 C -0.156 4.156 6 C 0.023 3.977 7 O -0.302 6.302 8 C -0.066 4.066 9 C 0.077 3.923 10 H 0.065 0.935 11 C -0.546 4.546 12 H 0.065 0.935 13 C -0.182 4.182 14 N -0.542 5.542 15 Si 0.764 3.236 16 H -0.202 1.202 17 H -0.214 1.214 18 H -0.193 1.193 19 C -0.156 4.156 20 C -0.214 4.214 21 C -0.209 4.209 22 C -0.145 4.145 23 H 0.088 0.912 24 H 0.086 0.914 25 H 0.102 0.898 26 H 0.163 0.837 27 H 0.100 0.900 28 H 0.097 0.903 29 H 0.073 0.927 30 H 0.237 0.763 31 H 0.065 0.935 32 H 0.107 0.893 33 H 0.098 0.902 34 H 0.126 0.874 35 H 0.119 0.881 36 H 0.086 0.914 37 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -6.531 6.505 7.294 11.755 hybrid contribution 0.300 -0.759 -0.791 1.137 sum -6.231 5.746 6.502 10.683 Atomic orbital electron populations 1.20738 0.89204 1.03455 1.02517 1.20216 0.97508 0.92613 1.00068 1.20874 0.92507 0.98103 1.04064 1.20470 0.94856 0.95221 1.01964 1.20605 0.99506 0.92640 1.02803 1.18441 0.83116 0.92015 1.04164 1.84925 1.16258 1.96268 1.32790 1.21004 0.94670 0.96380 0.94540 1.17403 0.96149 0.87892 0.90848 0.93545 1.21094 1.09080 1.26356 0.98038 0.93452 1.25655 0.94922 0.96134 1.01476 1.70096 1.11576 1.43132 1.29351 0.85926 0.77865 0.79435 0.80350 1.20166 1.21380 1.19308 1.22401 0.96006 1.00231 0.96940 1.23004 1.00270 1.02173 0.95987 1.22691 1.03779 0.91964 1.02507 1.20782 0.93290 0.97645 1.02734 0.91228 0.91361 0.89769 0.83739 0.89953 0.90325 0.92711 0.76275 0.93542 0.89262 0.90237 0.87423 0.88054 0.91403 0.87176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.57 10.01 71.23 0.71 -1.86 16 2 C -0.10 -3.57 5.88 -19.85 -0.12 -3.68 16 3 C -0.14 -4.49 9.35 22.25 0.21 -4.28 16 4 C -0.12 -4.52 5.89 -19.77 -0.12 -4.64 16 5 C -0.10 -2.81 9.80 71.24 0.70 -2.11 16 6 C 0.07 2.93 6.65 22.51 0.15 3.08 16 7 O -0.49 -21.64 11.31 -92.36 -1.04 -22.68 16 8 C -0.06 -3.00 4.78 -19.77 -0.09 -3.10 16 9 C 0.10 4.76 2.20 -12.29 -0.03 4.74 16 10 H 0.05 2.61 5.87 -2.39 -0.01 2.59 16 11 C -0.51 -28.09 7.71 25.60 0.20 -27.89 16 12 H 0.05 2.60 7.82 -2.91 -0.02 2.58 16 13 C 0.02 1.03 5.45 84.65 0.46 1.49 16 14 N -0.90 -54.43 12.76 21.45 0.27 -54.15 16 15 Si 0.94 45.28 29.54 68.60 2.03 47.31 16 16 H -0.28 -13.15 7.11 99.48 0.71 -12.44 16 17 H -0.29 -13.79 7.11 99.48 0.71 -13.08 16 18 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 19 C -0.14 -5.74 4.93 -10.79 -0.05 -5.79 16 20 C -0.18 -6.26 10.18 30.60 0.31 -5.95 16 21 C -0.17 -6.67 10.01 30.59 0.31 -6.36 16 22 C -0.13 -5.23 8.32 22.25 0.19 -5.04 16 23 H 0.07 1.68 8.14 -2.38 -0.02 1.66 16 24 H 0.07 1.61 8.08 -2.39 -0.02 1.59 16 25 H 0.08 1.66 8.08 -2.39 -0.02 1.64 16 26 H 0.14 3.63 8.06 -2.91 -0.02 3.61 16 27 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 28 H 0.08 1.88 8.09 -2.39 -0.02 1.86 16 29 H 0.05 1.72 7.52 -2.39 -0.02 1.70 16 30 H 0.38 13.07 9.06 -74.06 -0.67 12.40 16 31 H 0.26 14.94 8.31 -92.71 -0.77 14.17 16 32 H 0.09 3.54 7.42 -2.39 -0.02 3.52 16 33 H 0.08 2.90 8.08 -2.39 -0.02 2.88 16 34 H 0.11 3.10 8.14 -2.39 -0.02 3.09 16 35 H 0.10 3.34 8.14 -2.39 -0.02 3.32 16 36 H 0.07 2.99 8.14 -2.39 -0.02 2.97 16 37 H 0.11 4.53 7.80 -2.91 -0.02 4.50 16 Total: -1.00 -66.65 311.01 4.46 -62.19 By element: Atomic # 1 Polarization: 28.36 SS G_CDS: 0.39 Total: 28.75 kcal Atomic # 6 Polarization: -64.23 SS G_CDS: 2.82 Total: -61.41 kcal Atomic # 7 Polarization: -54.43 SS G_CDS: 0.27 Total: -54.15 kcal Atomic # 8 Polarization: -21.64 SS G_CDS: -1.04 Total: -22.68 kcal Atomic # 14 Polarization: 45.28 SS G_CDS: 2.03 Total: 47.31 kcal Total: -66.65 4.46 -62.19 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260203762.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.337 kcal (2) G-P(sol) polarization free energy of solvation -66.649 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.464 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.186 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.849 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds