Wall clock time and date at job start Mon Mar 30 2020 05:46:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38290 * 119.94297 * 2 1 4 4 C 1.38118 * 120.05452 * 180.31947 * 3 2 1 5 5 C 1.50703 * 120.02876 * 179.70358 * 4 3 2 6 6 C 1.38754 * 119.94531 * 359.42822 * 4 3 2 7 7 O 1.35894 * 120.05968 * 180.24839 * 6 4 3 8 8 C 1.38710 * 119.88664 * 0.27995 * 6 4 3 9 9 C 1.50696 * 120.03028 * 179.97438 * 8 6 4 10 10 H 1.09000 * 109.47101 * 359.97438 * 9 8 6 11 11 C 1.50699 * 109.47746 * 119.99485 * 9 8 6 12 12 H 1.07999 * 119.99878 * 359.97438 * 11 9 8 13 13 C 1.37872 * 120.00262 * 179.97438 * 11 9 8 14 14 N 1.31515 * 120.00003 * 359.97438 * 13 11 9 15 15 Si 1.86797 * 120.00128 * 179.97438 * 13 11 9 16 16 H 1.48505 * 109.47123 * 90.00204 * 15 13 11 17 17 H 1.48495 * 109.47551 * 209.99829 * 15 13 11 18 18 H 1.48502 * 109.47150 * 330.00441 * 15 13 11 19 19 C 1.53005 * 109.47138 * 239.99859 * 9 8 6 20 20 C 1.52999 * 117.49904 * 128.61800 * 19 9 8 21 21 C 1.53002 * 117.49869 * 59.99221 * 19 9 8 22 22 C 1.38166 * 119.94674 * 359.97438 * 8 6 4 23 23 H 1.08994 * 109.47307 * 270.27086 * 1 2 3 24 24 H 1.09001 * 109.46986 * 30.27258 * 1 2 3 25 25 H 1.08999 * 109.46836 * 150.27191 * 1 2 3 26 26 H 1.07998 * 119.97315 * 0.02574 * 3 2 1 27 27 H 1.09002 * 109.47152 * 269.72666 * 5 4 3 28 28 H 1.09001 * 109.46980 * 149.72766 * 5 4 3 29 29 H 1.09004 * 109.47113 * 29.72747 * 5 4 3 30 30 H 0.96702 * 113.99850 * 90.00162 * 7 6 4 31 31 H 0.97008 * 120.00089 * 179.97438 * 14 13 11 32 32 H 1.08999 * 115.54887 * 274.32434 * 19 9 8 33 33 H 1.08998 * 117.50165 * 0.02562 * 20 19 9 34 34 H 1.08998 * 117.49546 * 145.02154 * 20 19 9 35 35 H 1.09003 * 117.49930 * 214.98112 * 21 19 9 36 36 H 1.08998 * 117.49725 * 359.97438 * 21 19 9 37 37 H 1.07999 * 119.97733 * 180.02562 * 22 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1973 1.1983 0.0000 4 6 3.5785 1.2010 -0.0067 5 6 4.3301 2.5072 -0.0134 6 6 4.2735 0.0001 -0.0014 7 8 5.6324 0.0001 -0.0028 8 6 3.5788 -1.2005 0.0047 9 6 4.3303 -2.5067 0.0099 10 1 5.4023 -2.3091 0.0075 11 6 3.9665 -3.2908 1.2443 12 1 3.2618 -2.8839 1.9544 13 6 4.5332 -4.5278 1.4672 14 7 5.3910 -5.0236 0.6023 15 14 4.0827 -5.4995 2.9976 16 1 2.9110 -6.3645 2.7077 17 1 5.2338 -6.3452 3.4038 18 1 3.7451 -4.5613 4.0981 19 6 3.9583 -3.3141 -1.2353 20 6 5.1028 -3.8520 -2.0965 21 6 4.2507 -2.6846 -2.5989 22 6 2.1971 -1.1979 0.0061 23 1 -0.3633 0.0049 1.0276 24 1 -0.3633 0.8875 -0.5181 25 1 -0.3633 -0.8924 -0.5096 26 1 1.6560 2.1328 0.0004 27 1 4.5106 2.8173 -1.0427 28 1 5.2830 2.3807 0.5004 29 1 3.7402 3.2685 0.4972 30 1 6.0267 0.0045 0.8802 31 1 5.7900 -5.8938 0.7593 32 1 3.0628 -3.9291 -1.1466 33 1 6.1208 -3.6311 -1.7758 34 1 4.9604 -4.8212 -2.5744 35 1 3.5478 -2.8859 -3.4073 36 1 4.7077 -1.6952 -2.6088 37 1 1.6558 -2.1324 0.0112 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260203765.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:46:30 Heat of formation + Delta-G solvation = -15.030860 kcal Electronic energy + Delta-G solvation = -18127.402120 eV Core-core repulsion = 15448.777713 eV Total energy + Delta-G solvation = -2678.624407 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.52603 -36.43789 -36.22129 -32.90238 -32.33934 -31.39185 -27.79695 -26.45041 -25.58180 -23.47924 -21.22652 -20.83939 -20.16339 -18.62491 -17.56524 -16.46666 -15.40095 -15.00854 -14.61252 -14.21196 -13.70203 -13.43737 -12.96462 -12.86856 -12.74070 -12.56356 -12.23777 -12.12023 -11.81383 -11.14583 -11.01007 -10.95423 -10.82984 -10.64077 -10.38214 -10.11741 -9.98774 -9.74381 -9.47276 -8.67646 -8.67107 -8.26366 -7.83286 -7.59924 -5.98283 -4.05908 1.90151 2.08734 3.29056 3.36563 3.39561 4.26058 4.44943 4.96645 5.15836 5.23148 5.30407 5.38401 5.54264 5.68856 5.74361 5.87202 5.93420 6.04409 6.09513 6.13056 6.18573 6.26070 6.37306 6.52822 6.62541 6.64487 6.82847 6.95381 7.03721 7.16951 7.20934 7.30294 7.34920 7.55592 7.62957 7.83460 8.03259 8.36044 8.39350 8.96881 9.58013 11.07021 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.019787 B = 0.008226 C = 0.007580 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1414.735903 B = 3403.029763 C = 3692.812112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.102 4.102 3 C -0.134 4.134 4 C -0.118 4.118 5 C -0.100 4.100 6 C 0.085 3.915 7 O -0.493 6.493 8 C -0.041 4.041 9 C 0.105 3.895 10 H 0.046 0.954 11 C -0.517 4.517 12 H 0.056 0.944 13 C 0.068 3.932 14 N -0.872 5.872 15 Si 0.887 3.113 16 H -0.282 1.282 17 H -0.287 1.287 18 H -0.275 1.275 19 C -0.079 4.079 20 C -0.136 4.136 21 C -0.225 4.225 22 C -0.099 4.099 23 H 0.063 0.937 24 H 0.057 0.943 25 H 0.063 0.937 26 H 0.111 0.889 27 H 0.063 0.937 28 H 0.062 0.938 29 H 0.056 0.944 30 H 0.380 0.620 31 H 0.259 0.741 32 H 0.080 0.920 33 H 0.085 0.915 34 H 0.068 0.932 35 H 0.069 0.931 36 H 0.078 0.922 37 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.420 9.530 -1.423 10.601 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.102 4.102 3 C -0.152 4.152 4 C -0.118 4.118 5 C -0.157 4.157 6 C 0.040 3.960 7 O -0.302 6.302 8 C -0.041 4.041 9 C 0.087 3.913 10 H 0.064 0.936 11 C -0.555 4.555 12 H 0.074 0.926 13 C -0.135 4.135 14 N -0.509 5.509 15 Si 0.715 3.285 16 H -0.208 1.208 17 H -0.213 1.213 18 H -0.200 1.200 19 C -0.097 4.097 20 C -0.173 4.173 21 C -0.262 4.262 22 C -0.117 4.117 23 H 0.082 0.918 24 H 0.077 0.923 25 H 0.082 0.918 26 H 0.129 0.871 27 H 0.082 0.918 28 H 0.081 0.919 29 H 0.075 0.925 30 H 0.235 0.765 31 H 0.068 0.932 32 H 0.098 0.902 33 H 0.104 0.896 34 H 0.087 0.913 35 H 0.087 0.913 36 H 0.096 0.904 37 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -4.357 9.365 -2.073 10.535 hybrid contribution -0.135 -0.753 1.318 1.524 sum -4.492 8.612 -0.756 9.742 Atomic orbital electron populations 1.20701 0.92015 1.01990 1.01663 1.19850 0.95491 0.93374 1.01460 1.20479 0.92760 0.96972 1.05037 1.20033 0.93981 0.94682 1.03138 1.20556 0.99616 0.93831 1.01719 1.18198 0.82774 0.91358 1.03654 1.84772 1.16292 1.96273 1.32838 1.20824 0.93963 0.96169 0.93189 1.17452 0.95357 0.85975 0.92499 0.93598 1.21022 1.26477 1.02360 1.05631 0.92586 1.24949 0.94942 0.97452 0.96147 1.70040 1.28305 1.17799 1.34712 0.86683 0.77960 0.80137 0.83735 1.20773 1.21312 1.20016 1.22123 0.98344 0.99977 0.89298 1.22415 0.97008 0.94802 1.03053 1.23047 1.05447 0.97969 0.99771 1.20822 0.93713 0.96943 1.00185 0.91813 0.92350 0.91832 0.87058 0.91843 0.91865 0.92452 0.76471 0.93152 0.90179 0.89627 0.91312 0.91278 0.90370 0.85913 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.43 10.01 36.01 0.36 -1.07 16 2 C -0.10 -1.74 5.88 -104.60 -0.62 -2.35 16 3 C -0.13 -2.19 9.35 -39.61 -0.37 -2.56 16 4 C -0.12 -2.03 5.89 -104.47 -0.62 -2.64 16 5 C -0.10 -1.37 9.79 36.01 0.35 -1.02 16 6 C 0.08 1.68 6.65 -39.22 -0.26 1.41 16 7 O -0.49 -9.33 11.32 -19.41 -0.22 -9.55 16 8 C -0.04 -0.89 4.40 -104.48 -0.46 -1.35 16 9 C 0.11 2.58 2.07 -92.92 -0.19 2.39 16 10 H 0.05 1.23 6.75 -51.93 -0.35 0.88 16 11 C -0.52 -13.68 8.22 -34.44 -0.28 -13.96 16 12 H 0.06 1.49 7.60 -52.49 -0.40 1.09 16 13 C 0.07 1.83 5.30 -17.82 -0.09 1.74 16 14 N -0.87 -23.94 11.43 55.43 0.63 -23.31 16 15 Si 0.89 20.83 29.54 -169.99 -5.02 15.81 16 16 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 17 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 18 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 19 C -0.08 -1.86 3.87 -90.62 -0.35 -2.21 16 20 C -0.14 -3.08 9.05 -26.73 -0.24 -3.33 16 21 C -0.23 -4.76 9.87 -26.73 -0.26 -5.03 16 22 C -0.10 -1.97 8.47 -39.61 -0.34 -2.30 16 23 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 24 H 0.06 0.67 8.09 -51.93 -0.42 0.25 16 25 H 0.06 0.82 8.08 -51.93 -0.42 0.40 16 26 H 0.11 1.51 8.06 -52.49 -0.42 1.09 16 27 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 28 H 0.06 0.83 7.53 -51.93 -0.39 0.44 16 29 H 0.06 0.67 8.08 -51.93 -0.42 0.25 16 30 H 0.38 5.83 9.06 45.56 0.41 6.24 16 31 H 0.26 6.87 8.31 -40.82 -0.34 6.53 16 32 H 0.08 1.97 8.11 -51.93 -0.42 1.55 16 33 H 0.09 2.06 8.05 -51.93 -0.42 1.64 16 34 H 0.07 1.50 8.14 -51.93 -0.42 1.08 16 35 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 36 H 0.08 1.69 8.14 -51.93 -0.42 1.27 16 37 H 0.12 2.48 8.05 -52.49 -0.42 2.06 16 LS Contribution 308.92 15.07 4.66 4.66 Total: -1.00 -28.56 308.92 -8.24 -36.80 By element: Atomic # 1 Polarization: 12.79 SS G_CDS: -4.92 Total: 7.87 kcal Atomic # 6 Polarization: -28.91 SS G_CDS: -3.37 Total: -32.28 kcal Atomic # 7 Polarization: -23.94 SS G_CDS: 0.63 Total: -23.31 kcal Atomic # 8 Polarization: -9.33 SS G_CDS: -0.22 Total: -9.55 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.81 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -28.56 -8.24 -36.80 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260203765.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.768 kcal (2) G-P(sol) polarization free energy of solvation -28.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.790 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.799 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.031 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds