Wall clock time and date at job start Mon Mar 30 2020 05:46:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38290 * 119.94297 * 2 1 4 4 C 1.38118 * 120.05452 * 180.31947 * 3 2 1 5 5 C 1.50703 * 120.02876 * 179.70358 * 4 3 2 6 6 C 1.38754 * 119.94531 * 359.42822 * 4 3 2 7 7 O 1.35894 * 120.05968 * 180.24839 * 6 4 3 8 8 C 1.38710 * 119.88664 * 0.27995 * 6 4 3 9 9 C 1.50696 * 120.03028 * 179.97438 * 8 6 4 10 10 H 1.09000 * 109.47101 * 359.97438 * 9 8 6 11 11 C 1.50699 * 109.47746 * 119.99485 * 9 8 6 12 12 H 1.07999 * 119.99878 * 359.97438 * 11 9 8 13 13 C 1.37872 * 120.00262 * 179.97438 * 11 9 8 14 14 N 1.31515 * 120.00003 * 359.97438 * 13 11 9 15 15 Si 1.86797 * 120.00128 * 179.97438 * 13 11 9 16 16 H 1.48505 * 109.47123 * 90.00204 * 15 13 11 17 17 H 1.48495 * 109.47551 * 209.99829 * 15 13 11 18 18 H 1.48502 * 109.47150 * 330.00441 * 15 13 11 19 19 C 1.53005 * 109.47138 * 239.99859 * 9 8 6 20 20 C 1.52999 * 117.49904 * 128.61800 * 19 9 8 21 21 C 1.53002 * 117.49869 * 59.99221 * 19 9 8 22 22 C 1.38166 * 119.94674 * 359.97438 * 8 6 4 23 23 H 1.08994 * 109.47307 * 270.27086 * 1 2 3 24 24 H 1.09001 * 109.46986 * 30.27258 * 1 2 3 25 25 H 1.08999 * 109.46836 * 150.27191 * 1 2 3 26 26 H 1.07998 * 119.97315 * 0.02574 * 3 2 1 27 27 H 1.09002 * 109.47152 * 269.72666 * 5 4 3 28 28 H 1.09001 * 109.46980 * 149.72766 * 5 4 3 29 29 H 1.09004 * 109.47113 * 29.72747 * 5 4 3 30 30 H 0.96702 * 113.99850 * 90.00162 * 7 6 4 31 31 H 0.97008 * 120.00089 * 179.97438 * 14 13 11 32 32 H 1.08999 * 115.54887 * 274.32434 * 19 9 8 33 33 H 1.08998 * 117.50165 * 0.02562 * 20 19 9 34 34 H 1.08998 * 117.49546 * 145.02154 * 20 19 9 35 35 H 1.09003 * 117.49930 * 214.98112 * 21 19 9 36 36 H 1.08998 * 117.49725 * 359.97438 * 21 19 9 37 37 H 1.07999 * 119.97733 * 180.02562 * 22 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1973 1.1983 0.0000 4 6 3.5785 1.2010 -0.0067 5 6 4.3301 2.5072 -0.0134 6 6 4.2735 0.0001 -0.0014 7 8 5.6324 0.0001 -0.0028 8 6 3.5788 -1.2005 0.0047 9 6 4.3303 -2.5067 0.0099 10 1 5.4023 -2.3091 0.0075 11 6 3.9665 -3.2908 1.2443 12 1 3.2618 -2.8839 1.9544 13 6 4.5332 -4.5278 1.4672 14 7 5.3910 -5.0236 0.6023 15 14 4.0827 -5.4995 2.9976 16 1 2.9110 -6.3645 2.7077 17 1 5.2338 -6.3452 3.4038 18 1 3.7451 -4.5613 4.0981 19 6 3.9583 -3.3141 -1.2353 20 6 5.1028 -3.8520 -2.0965 21 6 4.2507 -2.6846 -2.5989 22 6 2.1971 -1.1979 0.0061 23 1 -0.3633 0.0049 1.0276 24 1 -0.3633 0.8875 -0.5181 25 1 -0.3633 -0.8924 -0.5096 26 1 1.6560 2.1328 0.0004 27 1 4.5106 2.8173 -1.0427 28 1 5.2830 2.3807 0.5004 29 1 3.7402 3.2685 0.4972 30 1 6.0267 0.0045 0.8802 31 1 5.7900 -5.8938 0.7593 32 1 3.0628 -3.9291 -1.1466 33 1 6.1208 -3.6311 -1.7758 34 1 4.9604 -4.8212 -2.5744 35 1 3.5478 -2.8859 -3.4073 36 1 4.7077 -1.6952 -2.6088 37 1 1.6558 -2.1324 0.0112 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260203765.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:46:30 Heat of formation + Delta-G solvation = -30.237277 kcal Electronic energy + Delta-G solvation = -18128.061520 eV Core-core repulsion = 15448.777713 eV Total energy + Delta-G solvation = -2679.283806 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.97858 -38.22086 -37.63036 -34.76054 -33.77056 -32.93585 -29.41846 -27.78656 -26.89981 -25.38788 -22.99291 -22.49307 -21.51311 -20.40714 -19.01224 -18.41825 -16.86690 -16.60892 -16.42935 -15.93664 -15.13396 -14.86507 -14.55436 -14.27513 -14.10903 -13.86519 -13.75985 -13.39141 -13.07968 -12.87863 -12.84181 -12.41473 -12.31276 -12.20678 -12.13722 -11.88871 -11.68942 -11.61601 -11.13061 -10.60853 -10.52853 -10.17260 -9.27528 -9.03894 -8.03072 -6.16959 0.50083 0.66215 1.40388 1.42481 1.51181 2.44434 2.87658 3.22060 3.35708 3.59039 4.04147 4.08277 4.21000 4.25240 4.46877 4.51177 4.56707 4.65511 4.80928 4.85721 4.87117 4.92311 4.96285 5.01196 5.12216 5.16434 5.29670 5.35183 5.43424 5.47717 5.55295 5.65359 5.71199 5.85554 5.87139 6.11713 6.20004 6.40631 6.90844 6.99253 7.49215 9.00481 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.019787 B = 0.008226 C = 0.007580 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1414.735903 B = 3403.029763 C = 3692.812112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.098 4.098 3 C -0.129 4.129 4 C -0.116 4.116 5 C -0.098 4.098 6 C 0.063 3.937 7 O -0.504 6.504 8 C -0.071 4.071 9 C 0.113 3.887 10 H 0.011 0.989 11 C -0.528 4.528 12 H 0.047 0.953 13 C 0.024 3.976 14 N -0.895 5.895 15 Si 0.946 3.054 16 H -0.278 1.278 17 H -0.285 1.285 18 H -0.273 1.273 19 C -0.093 4.093 20 C -0.139 4.139 21 C -0.194 4.194 22 C -0.119 4.119 23 H 0.075 0.925 24 H 0.085 0.915 25 H 0.063 0.937 26 H 0.150 0.850 27 H 0.071 0.929 28 H 0.064 0.936 29 H 0.084 0.916 30 H 0.391 0.609 31 H 0.258 0.742 32 H 0.064 0.936 33 H 0.065 0.935 34 H 0.076 0.924 35 H 0.095 0.905 36 H 0.073 0.927 37 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.014 11.481 -1.395 13.035 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.098 4.098 3 C -0.147 4.147 4 C -0.117 4.117 5 C -0.155 4.155 6 C 0.019 3.981 7 O -0.315 6.315 8 C -0.071 4.071 9 C 0.095 3.905 10 H 0.029 0.971 11 C -0.566 4.566 12 H 0.065 0.935 13 C -0.177 4.177 14 N -0.532 5.532 15 Si 0.772 3.228 16 H -0.204 1.204 17 H -0.211 1.211 18 H -0.197 1.197 19 C -0.111 4.111 20 C -0.176 4.176 21 C -0.231 4.231 22 C -0.137 4.137 23 H 0.094 0.906 24 H 0.103 0.897 25 H 0.082 0.918 26 H 0.168 0.832 27 H 0.090 0.910 28 H 0.083 0.917 29 H 0.103 0.897 30 H 0.247 0.753 31 H 0.067 0.933 32 H 0.083 0.917 33 H 0.084 0.916 34 H 0.095 0.905 35 H 0.113 0.887 36 H 0.091 0.909 37 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -5.953 11.323 -2.040 12.955 hybrid contribution 0.349 -1.290 1.310 1.872 sum -5.604 10.033 -0.730 11.515 Atomic orbital electron populations 1.20767 0.89169 1.03382 1.02851 1.20237 0.97573 0.92478 0.99551 1.20944 0.92530 0.98140 1.03087 1.20432 0.94762 0.95084 1.01403 1.20624 0.99739 0.92495 1.02633 1.18402 0.82972 0.91917 1.04827 1.84726 1.16433 1.96315 1.33996 1.20690 0.94796 0.95551 0.96113 1.17168 0.93590 0.87641 0.92109 0.97094 1.21258 1.26107 1.02838 1.06390 0.93519 1.25622 0.95000 0.98362 0.98729 1.70157 1.29062 1.17941 1.36081 0.85753 0.77661 0.78745 0.80618 1.20377 1.21058 1.19744 1.21961 0.97952 1.00746 0.90477 1.22324 0.95868 0.95950 1.03485 1.22983 1.04404 0.96895 0.98773 1.20789 0.93151 0.97813 1.01947 0.90600 0.89663 0.91789 0.83227 0.91035 0.91748 0.89707 0.75261 0.93309 0.91731 0.91643 0.90523 0.88682 0.90861 0.87457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.47 10.01 71.24 0.71 -1.76 16 2 C -0.10 -3.15 5.88 -19.85 -0.12 -3.26 16 3 C -0.13 -3.77 9.35 22.25 0.21 -3.56 16 4 C -0.12 -3.75 5.89 -19.77 -0.12 -3.86 16 5 C -0.10 -2.38 9.79 71.24 0.70 -1.68 16 6 C 0.06 2.50 6.65 22.51 0.15 2.65 16 7 O -0.50 -19.49 11.32 -92.35 -1.05 -20.53 16 8 C -0.07 -3.15 4.40 -19.77 -0.09 -3.23 16 9 C 0.11 5.78 2.07 -12.29 -0.03 5.76 16 10 H 0.01 0.62 6.75 -2.39 -0.02 0.61 16 11 C -0.53 -28.97 8.22 25.60 0.21 -28.76 16 12 H 0.05 2.58 7.60 -2.91 -0.02 2.55 16 13 C 0.02 1.30 5.30 84.65 0.45 1.75 16 14 N -0.89 -50.65 11.43 21.45 0.25 -50.41 16 15 Si 0.95 43.54 29.54 68.60 2.03 45.57 16 16 H -0.28 -12.55 7.11 99.48 0.71 -11.85 16 17 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 18 H -0.27 -12.32 7.11 99.48 0.71 -11.62 16 19 C -0.09 -4.52 3.87 -10.79 -0.04 -4.56 16 20 C -0.14 -6.49 9.05 30.60 0.28 -6.22 16 21 C -0.19 -8.19 9.87 30.60 0.30 -7.89 16 22 C -0.12 -4.77 8.47 22.25 0.19 -4.58 16 23 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 24 H 0.08 1.56 8.09 -2.39 -0.02 1.54 16 25 H 0.06 1.50 8.08 -2.39 -0.02 1.48 16 26 H 0.15 3.23 8.06 -2.91 -0.02 3.20 16 27 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 28 H 0.06 1.54 7.53 -2.39 -0.02 1.52 16 29 H 0.08 1.59 8.08 -2.38 -0.02 1.57 16 30 H 0.39 12.46 9.06 -74.06 -0.67 11.78 16 31 H 0.26 14.02 8.31 -92.70 -0.77 13.25 16 32 H 0.06 3.31 8.11 -2.39 -0.02 3.29 16 33 H 0.06 3.29 8.05 -2.39 -0.02 3.27 16 34 H 0.08 3.40 8.14 -2.39 -0.02 3.38 16 35 H 0.09 3.52 8.14 -2.39 -0.02 3.50 16 36 H 0.07 3.18 8.14 -2.39 -0.02 3.16 16 37 H 0.11 4.50 8.05 -2.91 -0.02 4.48 16 Total: -1.00 -62.83 308.92 4.42 -58.42 By element: Atomic # 1 Polarization: 25.78 SS G_CDS: 0.38 Total: 26.16 kcal Atomic # 6 Polarization: -62.02 SS G_CDS: 2.81 Total: -59.21 kcal Atomic # 7 Polarization: -50.65 SS G_CDS: 0.25 Total: -50.41 kcal Atomic # 8 Polarization: -19.49 SS G_CDS: -1.05 Total: -20.53 kcal Atomic # 14 Polarization: 43.54 SS G_CDS: 2.03 Total: 45.57 kcal Total: -62.83 4.42 -58.42 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260203765.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.181 kcal (2) G-P(sol) polarization free energy of solvation -62.835 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.654 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.416 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.418 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.237 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds