Wall clock time and date at job start Mon Mar 30 2020 05:46:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38144 * 119.97431 * 2 1 4 4 C 1.38725 * 119.94434 * 180.26971 * 3 2 1 5 5 O 1.35900 * 120.05824 * 179.72750 * 4 3 2 6 6 C 1.38734 * 119.89129 * 359.74862 * 4 3 2 7 7 C 1.38146 * 119.94388 * 0.02562 * 6 4 3 8 8 C 1.50695 * 119.97526 * 179.97438 * 7 6 4 9 9 C 1.38267 * 119.97158 * 179.74794 * 2 1 3 10 10 C 1.50704 * 119.94483 * 359.97438 * 9 2 1 11 11 H 1.09003 * 109.47132 * 7.55705 * 10 9 2 12 12 C 1.50696 * 109.46939 * 127.56024 * 10 9 2 13 13 H 1.07996 * 120.00223 * 5.22486 * 12 10 9 14 14 C 1.37880 * 119.99692 * 185.23170 * 12 10 9 15 15 N 1.31513 * 120.00195 * 357.11299 * 14 12 10 16 16 Si 1.86799 * 119.99834 * 177.11662 * 14 12 10 17 17 H 1.48492 * 109.47341 * 359.97438 * 16 14 12 18 18 H 1.48504 * 109.47058 * 120.00043 * 16 14 12 19 19 H 1.48506 * 109.47100 * 239.99679 * 16 14 12 20 20 C 1.53000 * 109.47040 * 247.56011 * 10 9 2 21 21 C 1.52998 * 117.50185 * 66.93272 * 20 10 9 22 22 C 1.52997 * 60.03451 * 252.47422 * 21 20 10 23 23 H 1.08999 * 109.46755 * 264.11586 * 1 2 3 24 24 H 1.08998 * 109.46710 * 24.11318 * 1 2 3 25 25 H 1.08998 * 109.46908 * 144.11869 * 1 2 3 26 26 H 1.08001 * 120.02678 * 359.97438 * 3 2 1 27 27 H 0.96703 * 113.99850 * 270.02530 * 5 4 3 28 28 H 1.07995 * 120.03183 * 179.97438 * 6 4 3 29 29 H 1.09001 * 109.47164 * 274.93794 * 8 7 6 30 30 H 1.09000 * 109.46950 * 34.94039 * 8 7 6 31 31 H 1.08997 * 109.47099 * 154.94192 * 8 7 6 32 32 H 0.96999 * 120.00473 * 180.02562 * 15 14 12 33 33 H 1.09000 * 115.54775 * 212.60289 * 20 10 9 34 34 H 1.09009 * 117.49558 * 359.97438 * 21 20 10 35 35 H 1.08999 * 117.50353 * 144.96668 * 21 20 10 36 36 H 1.09002 * 117.49706 * 107.49549 * 22 21 20 37 37 H 1.08995 * 117.49904 * 252.52344 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1972 1.1967 0.0000 4 6 3.5844 1.1960 -0.0057 5 8 4.2657 2.3718 -0.0113 6 6 4.2752 -0.0072 -0.0060 7 6 3.5804 -1.2012 -0.0013 8 6 4.3300 -2.5085 -0.0023 9 6 2.1978 -1.1978 0.0053 10 6 1.4423 -2.5018 0.0116 11 1 0.3786 -2.3061 -0.1241 12 6 1.9396 -3.3757 -1.1109 13 1 2.7800 -3.0587 -1.7104 14 6 1.3214 -4.5801 -1.3724 15 7 0.3346 -4.9927 -0.6072 16 14 1.8856 -5.6259 -2.8138 17 1 3.0036 -4.9432 -3.5130 18 1 2.3455 -6.9474 -2.3164 19 1 0.7557 -5.8183 -3.7580 20 6 1.6637 -3.2129 1.3481 21 6 1.0774 -2.5600 2.6014 22 6 2.5887 -2.5381 2.3641 23 1 -0.3633 -0.1054 1.0223 24 1 -0.3633 0.9380 -0.4198 25 1 -0.3633 -0.8326 -0.6023 26 1 1.6572 2.1320 -0.0004 27 1 4.4590 2.7102 -0.8963 28 1 5.3552 -0.0104 -0.0108 29 1 4.5833 -2.7813 -1.0267 30 1 5.2440 -2.4037 0.5824 31 1 3.7050 -3.2861 0.4368 32 1 -0.1001 -5.8401 -0.7910 33 1 1.6725 -4.3020 1.3053 34 1 0.5343 -1.6235 2.4738 35 1 0.7000 -3.2195 3.3829 36 1 3.0398 -1.5872 2.0803 37 1 3.2057 -3.1835 2.9892 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260228874.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:46:16 Heat of formation + Delta-G solvation = -17.104871 kcal Electronic energy + Delta-G solvation = -18525.045583 eV Core-core repulsion = 15846.331241 eV Total energy + Delta-G solvation = -2678.714342 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.31735 -38.96449 -36.95320 -34.73242 -34.38458 -32.19285 -29.40316 -27.86142 -27.50095 -25.00151 -23.05701 -22.48923 -21.54450 -20.42393 -18.58038 -18.49693 -17.11812 -16.77637 -16.34700 -15.88475 -15.53708 -15.07848 -14.27717 -14.19492 -13.94669 -13.84317 -13.73631 -13.60415 -12.88872 -12.85590 -12.70350 -12.40066 -12.36406 -12.11637 -12.04486 -11.89252 -11.54455 -11.29079 -11.16690 -10.87334 -10.34767 -10.04793 -9.36438 -8.98735 -8.02463 -6.10039 0.53313 0.55887 1.41282 1.45913 1.54409 2.47218 2.83633 3.24657 3.33683 3.43716 4.06326 4.10623 4.26095 4.32716 4.45280 4.50128 4.55428 4.64236 4.76549 4.80782 4.83372 4.92339 5.00216 5.06370 5.10007 5.26917 5.30392 5.43814 5.51476 5.57732 5.63729 5.67005 5.81851 5.83714 5.92573 6.16431 6.21108 6.48540 6.97268 6.97466 7.53716 9.03484 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.022746 B = 0.008602 C = 0.007934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1230.677082 B = 3254.336453 C = 3528.485698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.090 4.090 3 C -0.157 4.157 4 C 0.089 3.911 5 O -0.507 6.507 6 C -0.165 4.165 7 C -0.058 4.058 8 C -0.109 4.109 9 C -0.067 4.067 10 C 0.105 3.895 11 H 0.025 0.975 12 C -0.504 4.504 13 H 0.059 0.941 14 C 0.018 3.982 15 N -0.913 5.913 16 Si 0.939 3.061 17 H -0.268 1.268 18 H -0.284 1.284 19 H -0.287 1.287 20 C -0.101 4.101 21 C -0.195 4.195 22 C -0.185 4.185 23 H 0.069 0.931 24 H 0.081 0.919 25 H 0.056 0.944 26 H 0.139 0.861 27 H 0.404 0.596 28 H 0.135 0.865 29 H 0.057 0.943 30 H 0.063 0.937 31 H 0.082 0.918 32 H 0.258 0.742 33 H 0.079 0.921 34 H 0.082 0.918 35 H 0.085 0.915 36 H 0.091 0.909 37 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.777 9.465 1.293 10.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.090 4.090 3 C -0.176 4.176 4 C 0.045 3.955 5 O -0.319 6.319 6 C -0.183 4.183 7 C -0.058 4.058 8 C -0.166 4.166 9 C -0.067 4.067 10 C 0.087 3.913 11 H 0.043 0.957 12 C -0.543 4.543 13 H 0.077 0.923 14 C -0.181 4.181 15 N -0.553 5.553 16 Si 0.766 3.234 17 H -0.192 1.192 18 H -0.210 1.210 19 H -0.213 1.213 20 C -0.120 4.120 21 C -0.232 4.232 22 C -0.222 4.222 23 H 0.087 0.913 24 H 0.100 0.900 25 H 0.075 0.925 26 H 0.156 0.844 27 H 0.262 0.738 28 H 0.152 0.848 29 H 0.075 0.925 30 H 0.082 0.918 31 H 0.100 0.900 32 H 0.067 0.933 33 H 0.097 0.903 34 H 0.100 0.900 35 H 0.104 0.896 36 H 0.109 0.891 37 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 4.630 9.268 1.910 10.535 hybrid contribution 0.019 -0.899 -1.251 1.541 sum 4.650 8.369 0.658 9.596 Atomic orbital electron populations 1.20792 0.90756 1.02686 1.02248 1.19886 0.96790 0.92240 1.00103 1.21289 0.93547 0.98002 1.04734 1.18307 0.89861 0.85185 1.02185 1.84744 1.76226 1.35876 1.35040 1.21356 1.00508 0.91366 1.05106 1.19694 0.93218 0.95299 0.97611 1.21029 0.99061 0.95067 1.01409 1.20187 0.93750 0.95502 0.97225 1.17362 0.94463 0.87974 0.91542 0.95725 1.21455 1.15171 1.03163 1.14476 0.92322 1.25563 0.95377 0.98937 0.98208 1.70095 1.24477 1.21576 1.39166 0.85792 0.78183 0.78997 0.80441 1.19242 1.21039 1.21301 1.22235 1.01436 0.98243 0.90080 1.22933 0.96239 1.02424 1.01599 1.23180 0.92338 1.02752 1.03924 0.91262 0.90008 0.92501 0.84352 0.73781 0.84763 0.92455 0.91836 0.89963 0.93327 0.90314 0.89999 0.89629 0.89062 0.89434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.60 9.29 71.24 0.66 -2.94 16 2 C -0.09 -3.30 5.88 -19.88 -0.12 -3.42 16 3 C -0.16 -5.03 9.62 22.36 0.22 -4.82 16 4 C 0.09 2.77 6.70 22.51 0.15 2.92 16 5 O -0.51 -13.02 13.50 -92.43 -1.25 -14.27 16 6 C -0.16 -5.47 9.66 22.37 0.22 -5.25 16 7 C -0.06 -2.21 3.75 -19.88 -0.07 -2.28 16 8 C -0.11 -4.09 7.41 71.23 0.53 -3.56 16 9 C -0.07 -2.74 3.56 -19.85 -0.07 -2.81 16 10 C 0.10 4.95 1.87 -12.29 -0.02 4.93 16 11 H 0.02 1.29 5.54 -2.39 -0.01 1.28 16 12 C -0.50 -25.95 6.51 25.60 0.17 -25.79 16 13 H 0.06 3.01 5.80 -2.91 -0.02 3.00 16 14 C 0.02 0.95 5.21 84.66 0.44 1.39 16 15 N -0.91 -50.78 12.02 21.45 0.26 -50.52 16 16 Si 0.94 42.44 29.54 68.60 2.03 44.47 16 17 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 18 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 19 H -0.29 -12.96 7.11 99.48 0.71 -12.26 16 20 C -0.10 -4.58 3.91 -10.77 -0.04 -4.62 16 21 C -0.19 -7.65 10.14 30.59 0.31 -7.34 16 22 C -0.19 -7.11 7.80 30.62 0.24 -6.87 16 23 H 0.07 2.20 7.70 -2.39 -0.02 2.18 16 24 H 0.08 2.19 8.04 -2.39 -0.02 2.17 16 25 H 0.06 2.17 6.32 -2.39 -0.02 2.15 16 26 H 0.14 3.71 8.06 -2.91 -0.02 3.68 16 27 H 0.40 6.26 9.06 -74.05 -0.67 5.59 16 28 H 0.13 3.86 8.06 -2.91 -0.02 3.84 16 29 H 0.06 2.18 7.22 -2.39 -0.02 2.16 16 30 H 0.06 2.00 8.12 -2.39 -0.02 1.98 16 31 H 0.08 3.47 3.93 -2.39 -0.01 3.46 16 32 H 0.26 13.79 8.31 -92.71 -0.77 13.02 16 33 H 0.08 4.08 6.96 -2.39 -0.02 4.07 16 34 H 0.08 3.13 7.71 -2.38 -0.02 3.11 16 35 H 0.09 3.13 8.14 -2.39 -0.02 3.11 16 36 H 0.09 3.54 5.13 -2.39 -0.01 3.53 16 37 H 0.09 3.07 8.14 -2.39 -0.02 3.05 16 Total: -1.00 -58.82 289.93 4.05 -54.76 By element: Atomic # 1 Polarization: 25.60 SS G_CDS: 0.42 Total: 26.02 kcal Atomic # 6 Polarization: -63.06 SS G_CDS: 2.60 Total: -60.46 kcal Atomic # 7 Polarization: -50.78 SS G_CDS: 0.26 Total: -50.52 kcal Atomic # 8 Polarization: -13.02 SS G_CDS: -1.25 Total: -14.27 kcal Atomic # 14 Polarization: 42.44 SS G_CDS: 2.03 Total: 44.47 kcal Total: -58.82 4.05 -54.76 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260228874.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.660 kcal (2) G-P(sol) polarization free energy of solvation -58.819 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.159 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.765 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.105 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds