Wall clock time and date at job start Mon Mar 30 2020 05:53:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35902 * 116.99955 * 2 1 4 4 C 1.38758 * 120.05334 * 359.97438 * 3 2 1 5 5 C 1.38122 * 119.94183 * 179.72721 * 4 3 2 6 6 C 1.38287 * 120.05313 * 359.97438 * 5 4 3 7 7 C 1.38238 * 120.11801 * 0.02562 * 6 5 4 8 8 C 1.50698 * 119.97520 * 180.02562 * 7 6 5 9 9 H 1.09008 * 109.46819 * 175.27213 * 8 7 6 10 10 C 1.50701 * 109.47213 * 55.27613 * 8 7 6 11 11 H 1.07998 * 119.99814 * 294.96175 * 10 8 7 12 12 C 1.37873 * 120.00280 * 114.96112 * 10 8 7 13 13 N 1.31519 * 120.00140 * 5.06562 * 12 10 8 14 14 Si 1.86795 * 120.00057 * 185.06647 * 12 10 8 15 15 H 1.48506 * 109.47408 * 359.97438 * 14 12 10 16 16 H 1.48495 * 109.47404 * 120.00020 * 14 12 10 17 17 H 1.48507 * 109.47167 * 239.99935 * 14 12 10 18 18 C 1.53002 * 109.47058 * 295.27224 * 8 7 6 19 19 C 1.52999 * 117.49888 * 253.98130 * 18 8 7 20 20 C 1.53001 * 117.49560 * 185.32116 * 18 8 7 21 21 C 1.38173 * 120.05350 * 0.02562 * 7 6 5 22 22 C 1.50698 * 120.02864 * 180.02562 * 21 7 6 23 23 H 1.09003 * 109.47183 * 180.02562 * 1 2 3 24 24 H 1.08995 * 109.47411 * 300.00507 * 1 2 3 25 25 H 1.08996 * 109.47088 * 60.00696 * 1 2 3 26 26 H 1.07996 * 120.02985 * 359.74446 * 4 3 2 27 27 H 1.07995 * 119.97241 * 179.97438 * 5 4 3 28 28 H 1.08001 * 119.94225 * 180.02562 * 6 5 4 29 29 H 0.96994 * 119.99752 * 180.02562 * 13 12 10 30 30 H 1.08994 * 115.55099 * 39.65437 * 18 8 7 31 31 H 1.09000 * 117.50190 * 359.97438 * 19 18 8 32 32 H 1.08995 * 117.50154 * 145.02019 * 19 18 8 33 33 H 1.08999 * 117.49793 * 214.97888 * 20 18 8 34 34 H 1.08999 * 117.50107 * 359.97438 * 20 18 8 35 35 H 1.09000 * 109.47293 * 275.88457 * 22 21 7 36 36 H 1.08999 * 109.47147 * 35.88987 * 22 21 7 37 37 H 1.08999 * 109.47233 * 155.88577 * 22 21 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2913 2.3753 -0.0005 5 6 1.9208 3.6048 0.0052 6 6 3.3018 3.6757 0.0119 7 6 4.0559 2.5172 0.0125 8 6 5.5607 2.5983 0.0205 9 1 5.9782 1.5948 0.1044 10 6 6.0128 3.4301 1.1930 11 1 5.7635 4.4799 1.2383 12 6 6.7445 2.8509 2.2079 13 7 7.1333 1.5986 2.1062 14 14 7.1836 3.8448 3.7273 15 1 6.6325 5.2176 3.5972 16 1 6.6072 3.1914 4.9298 17 1 8.6608 3.9157 3.8626 18 6 6.0435 3.2444 -1.2797 19 6 6.6876 2.3319 -2.3253 20 6 7.5533 3.3046 -1.5204 21 6 3.4311 1.2848 0.0057 22 6 4.2537 0.0222 0.0069 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5137 -0.8900 26 1 0.2128 2.3204 -0.0051 27 1 1.3339 4.5113 0.0043 28 1 3.7921 4.6380 0.0168 29 1 7.6478 1.1911 2.8204 30 1 5.4426 4.0786 -1.6415 31 1 6.7679 1.2713 -2.0869 32 1 6.5107 2.5660 -3.3750 33 1 7.9455 4.1782 -2.0410 34 1 8.2025 2.8843 -0.7524 35 1 4.5460 -0.2220 -1.0144 36 1 5.1463 0.1706 0.6147 37 1 3.6639 -0.7954 0.4213 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260229023.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:53:09 Heat of formation + Delta-G solvation = -0.675669 kcal Electronic energy + Delta-G solvation = -18063.595236 eV Core-core repulsion = 15385.593318 eV Total energy + Delta-G solvation = -2678.001919 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.65962 -37.57077 -35.94256 -32.93015 -32.01511 -30.30522 -27.26036 -27.06313 -25.65688 -23.59179 -21.44030 -21.19598 -20.34082 -18.97346 -17.08822 -16.44546 -15.53794 -15.35431 -14.81626 -14.59664 -14.50212 -13.54398 -13.14100 -13.04062 -12.55932 -12.31758 -11.99057 -11.61942 -11.48130 -11.37383 -11.09243 -10.97658 -10.65541 -10.57707 -10.44120 -10.37036 -10.11856 -9.88205 -9.39544 -8.89711 -8.63490 -8.48478 -7.62772 -7.38508 -6.06568 -4.06654 2.16959 2.26636 3.28752 3.37317 3.41141 3.75315 4.38969 4.59341 4.91012 5.23623 5.29067 5.34501 5.46931 5.53238 5.63383 5.76248 5.97814 6.03277 6.08302 6.15073 6.17639 6.40964 6.44675 6.51216 6.59225 6.66235 6.86004 6.92264 7.05513 7.08918 7.17988 7.26341 7.31172 7.50864 7.69795 7.83215 7.99937 8.05166 8.37695 9.01843 9.54885 11.02026 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.019714 B = 0.008196 C = 0.007246 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1419.983934 B = 3415.360317 C = 3863.150395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.319 6.319 3 C 0.113 3.887 4 C -0.234 4.234 5 C -0.099 4.099 6 C -0.145 4.145 7 C 0.011 3.989 8 C 0.077 3.923 9 H 0.092 0.908 10 C -0.494 4.494 11 H 0.056 0.944 12 C 0.068 3.932 13 N -0.890 5.890 14 Si 0.890 3.110 15 H -0.272 1.272 16 H -0.284 1.284 17 H -0.284 1.284 18 C -0.115 4.115 19 C -0.203 4.203 20 C -0.167 4.167 21 C -0.120 4.120 22 C -0.107 4.107 23 H 0.091 0.909 24 H 0.049 0.951 25 H 0.048 0.952 26 H 0.112 0.888 27 H 0.110 0.890 28 H 0.117 0.883 29 H 0.262 0.738 30 H 0.080 0.920 31 H 0.086 0.914 32 H 0.073 0.927 33 H 0.073 0.927 34 H 0.098 0.902 35 H 0.054 0.946 36 H 0.092 0.908 37 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.428 -0.747 -5.041 9.849 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.233 6.233 3 C 0.069 3.931 4 C -0.253 4.253 5 C -0.117 4.117 6 C -0.163 4.163 7 C 0.010 3.990 8 C 0.058 3.942 9 H 0.110 0.890 10 C -0.532 4.532 11 H 0.074 0.926 12 C -0.134 4.134 13 N -0.528 5.528 14 Si 0.718 3.282 15 H -0.197 1.197 16 H -0.210 1.210 17 H -0.210 1.210 18 C -0.134 4.134 19 C -0.240 4.240 20 C -0.204 4.204 21 C -0.120 4.120 22 C -0.164 4.164 23 H 0.109 0.891 24 H 0.067 0.933 25 H 0.067 0.933 26 H 0.130 0.870 27 H 0.128 0.872 28 H 0.135 0.865 29 H 0.072 0.928 30 H 0.098 0.902 31 H 0.104 0.896 32 H 0.092 0.908 33 H 0.091 0.909 34 H 0.116 0.884 35 H 0.073 0.927 36 H 0.111 0.889 37 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -8.234 -1.084 -4.933 9.659 hybrid contribution -0.193 0.794 0.941 1.246 sum -8.427 -0.290 -3.992 9.329 Atomic orbital electron populations 1.22896 0.79843 1.02855 1.00812 1.86037 1.20120 1.27756 1.89412 1.18838 0.91950 0.83454 0.98844 1.20858 0.98639 0.92654 1.13155 1.20763 0.94889 0.96105 0.99923 1.20903 0.92692 0.98881 1.03814 1.20483 0.98775 0.90225 0.89513 1.17961 0.85482 1.00326 0.90409 0.88967 1.20938 1.32965 0.95488 1.03822 0.92572 1.24938 0.95255 0.95020 0.98234 1.69859 1.37541 1.12267 1.33132 0.86568 0.77987 0.80458 0.83205 1.19703 1.21024 1.21050 1.22483 0.94439 0.99579 0.96903 1.22984 1.07899 0.97237 0.95841 1.22690 0.95296 1.00093 1.02362 1.19201 0.89676 0.96465 1.06681 1.20675 1.00331 0.93754 1.01611 0.89089 0.93252 0.93292 0.86970 0.87239 0.86478 0.92819 0.90228 0.89565 0.90850 0.90895 0.88402 0.92721 0.88914 0.92828 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 9.81 101.05 0.99 1.38 16 2 O -0.32 -5.61 9.44 -19.43 -0.18 -5.79 16 3 C 0.11 2.22 6.66 -39.22 -0.26 1.96 16 4 C -0.23 -4.15 9.04 -39.43 -0.36 -4.51 16 5 C -0.10 -1.78 10.04 -39.61 -0.40 -2.18 16 6 C -0.14 -2.98 8.70 -39.56 -0.34 -3.33 16 7 C 0.01 0.24 4.77 -104.65 -0.50 -0.26 16 8 C 0.08 1.82 2.20 -92.92 -0.20 1.62 16 9 H 0.09 2.37 4.13 -51.92 -0.21 2.16 16 10 C -0.49 -12.94 7.56 -34.44 -0.26 -13.20 16 11 H 0.06 1.48 7.59 -52.49 -0.40 1.08 16 12 C 0.07 1.81 5.45 -17.82 -0.10 1.71 16 13 N -0.89 -24.49 12.62 55.43 0.70 -23.79 16 14 Si 0.89 21.02 29.54 -169.99 -5.02 16.00 16 15 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 16 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 17 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 18 C -0.12 -2.46 4.95 -90.62 -0.45 -2.91 16 19 C -0.20 -3.87 10.18 -26.69 -0.27 -4.14 16 20 C -0.17 -3.38 10.01 -26.69 -0.27 -3.65 16 21 C -0.12 -2.59 5.89 -104.47 -0.62 -3.20 16 22 C -0.11 -2.22 9.10 36.00 0.33 -1.89 16 23 H 0.09 0.88 8.14 -51.93 -0.42 0.45 16 24 H 0.05 0.57 7.67 -51.93 -0.40 0.17 16 25 H 0.05 0.54 7.66 -51.93 -0.40 0.15 16 26 H 0.11 1.64 6.30 -52.49 -0.33 1.31 16 27 H 0.11 1.64 8.06 -52.49 -0.42 1.22 16 28 H 0.12 2.36 7.73 -52.49 -0.41 1.95 16 29 H 0.26 6.92 8.31 -40.82 -0.34 6.58 16 30 H 0.08 1.63 7.76 -51.93 -0.40 1.23 16 31 H 0.09 1.68 8.08 -51.93 -0.42 1.26 16 32 H 0.07 1.24 8.14 -51.93 -0.42 0.81 16 33 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 34 H 0.10 2.20 8.14 -51.93 -0.42 1.77 16 35 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 36 H 0.09 2.15 6.35 -51.93 -0.33 1.82 16 37 H 0.05 1.04 7.35 -51.93 -0.38 0.66 16 LS Contribution 305.00 15.07 4.60 4.60 Total: -1.00 -28.09 305.00 -7.96 -36.06 By element: Atomic # 1 Polarization: 10.88 SS G_CDS: -5.35 Total: 5.53 kcal Atomic # 6 Polarization: -29.89 SS G_CDS: -2.70 Total: -32.60 kcal Atomic # 7 Polarization: -24.49 SS G_CDS: 0.70 Total: -23.79 kcal Atomic # 8 Polarization: -5.61 SS G_CDS: -0.18 Total: -5.79 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 16.00 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -28.09 -7.96 -36.06 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260229023.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.381 kcal (2) G-P(sol) polarization free energy of solvation -28.092 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.289 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.965 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.056 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.676 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds