Wall clock time and date at job start Mon Mar 30 2020 05:53:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35902 * 116.99955 * 2 1 4 4 C 1.38758 * 120.05334 * 359.97438 * 3 2 1 5 5 C 1.38122 * 119.94183 * 179.72721 * 4 3 2 6 6 C 1.38287 * 120.05313 * 359.97438 * 5 4 3 7 7 C 1.38238 * 120.11801 * 0.02562 * 6 5 4 8 8 C 1.50698 * 119.97520 * 180.02562 * 7 6 5 9 9 H 1.09008 * 109.46819 * 175.27213 * 8 7 6 10 10 C 1.50701 * 109.47213 * 55.27613 * 8 7 6 11 11 H 1.07998 * 119.99814 * 294.96175 * 10 8 7 12 12 C 1.37873 * 120.00280 * 114.96112 * 10 8 7 13 13 N 1.31519 * 120.00140 * 5.06562 * 12 10 8 14 14 Si 1.86795 * 120.00057 * 185.06647 * 12 10 8 15 15 H 1.48506 * 109.47408 * 359.97438 * 14 12 10 16 16 H 1.48495 * 109.47404 * 120.00020 * 14 12 10 17 17 H 1.48507 * 109.47167 * 239.99935 * 14 12 10 18 18 C 1.53002 * 109.47058 * 295.27224 * 8 7 6 19 19 C 1.52999 * 117.49888 * 253.98130 * 18 8 7 20 20 C 1.53001 * 117.49560 * 185.32116 * 18 8 7 21 21 C 1.38173 * 120.05350 * 0.02562 * 7 6 5 22 22 C 1.50698 * 120.02864 * 180.02562 * 21 7 6 23 23 H 1.09003 * 109.47183 * 180.02562 * 1 2 3 24 24 H 1.08995 * 109.47411 * 300.00507 * 1 2 3 25 25 H 1.08996 * 109.47088 * 60.00696 * 1 2 3 26 26 H 1.07996 * 120.02985 * 359.74446 * 4 3 2 27 27 H 1.07995 * 119.97241 * 179.97438 * 5 4 3 28 28 H 1.08001 * 119.94225 * 180.02562 * 6 5 4 29 29 H 0.96994 * 119.99752 * 180.02562 * 13 12 10 30 30 H 1.08994 * 115.55099 * 39.65437 * 18 8 7 31 31 H 1.09000 * 117.50190 * 359.97438 * 19 18 8 32 32 H 1.08995 * 117.50154 * 145.02019 * 19 18 8 33 33 H 1.08999 * 117.49793 * 214.97888 * 20 18 8 34 34 H 1.08999 * 117.50107 * 359.97438 * 20 18 8 35 35 H 1.09000 * 109.47293 * 275.88457 * 22 21 7 36 36 H 1.08999 * 109.47147 * 35.88987 * 22 21 7 37 37 H 1.08999 * 109.47233 * 155.88577 * 22 21 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2913 2.3753 -0.0005 5 6 1.9208 3.6048 0.0052 6 6 3.3018 3.6757 0.0119 7 6 4.0559 2.5172 0.0125 8 6 5.5607 2.5983 0.0205 9 1 5.9782 1.5948 0.1044 10 6 6.0128 3.4301 1.1930 11 1 5.7635 4.4799 1.2383 12 6 6.7445 2.8509 2.2079 13 7 7.1333 1.5986 2.1062 14 14 7.1836 3.8448 3.7273 15 1 6.6325 5.2176 3.5972 16 1 6.6072 3.1914 4.9298 17 1 8.6608 3.9157 3.8626 18 6 6.0435 3.2444 -1.2797 19 6 6.6876 2.3319 -2.3253 20 6 7.5533 3.3046 -1.5204 21 6 3.4311 1.2848 0.0057 22 6 4.2537 0.0222 0.0069 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5137 -0.8900 26 1 0.2128 2.3204 -0.0051 27 1 1.3339 4.5113 0.0043 28 1 3.7921 4.6380 0.0168 29 1 7.6478 1.1911 2.8204 30 1 5.4426 4.0786 -1.6415 31 1 6.7679 1.2713 -2.0869 32 1 6.5107 2.5660 -3.3750 33 1 7.9455 4.1782 -2.0410 34 1 8.2025 2.8843 -0.7524 35 1 4.5460 -0.2220 -1.0144 36 1 5.1463 0.1706 0.6147 37 1 3.6639 -0.7954 0.4213 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260229023.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:53:09 Heat of formation + Delta-G solvation = -14.233714 kcal Electronic energy + Delta-G solvation = -18064.183157 eV Core-core repulsion = 15385.593318 eV Total energy + Delta-G solvation = -2678.589840 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.09421 -39.08064 -37.47266 -34.78944 -33.63863 -31.92849 -28.81505 -28.33532 -27.23357 -25.43747 -23.02033 -22.71519 -21.86251 -20.62340 -18.65167 -18.19898 -16.98026 -16.59744 -16.50189 -16.30600 -16.06552 -15.10677 -14.67317 -14.52335 -14.12078 -13.94550 -13.56806 -13.27797 -12.97367 -12.92323 -12.78078 -12.64759 -12.35406 -12.20646 -12.01400 -11.88011 -11.65230 -11.58447 -11.07539 -10.70631 -10.49813 -10.32031 -9.21903 -8.85498 -8.07821 -6.12964 0.65685 0.75348 1.39359 1.42490 1.52190 2.43678 2.53775 3.02998 3.20402 3.36234 4.05511 4.08766 4.20654 4.37321 4.41374 4.43538 4.45671 4.48270 4.65877 4.70564 4.76684 4.83991 4.88689 4.90010 4.97637 5.07157 5.28287 5.28371 5.48055 5.52206 5.52612 5.61595 5.71717 5.80492 5.85912 6.08890 6.24790 6.46044 6.67649 7.01572 7.49907 8.99596 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.019714 B = 0.008196 C = 0.007246 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1419.983934 B = 3415.360317 C = 3863.150395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.337 6.337 3 C 0.112 3.888 4 C -0.227 4.227 5 C -0.090 4.090 6 C -0.163 4.163 7 C -0.013 4.013 8 C 0.077 3.923 9 H 0.066 0.934 10 C -0.499 4.499 11 H 0.049 0.951 12 C 0.020 3.980 13 N -0.918 5.918 14 Si 0.943 3.057 15 H -0.267 1.267 16 H -0.286 1.286 17 H -0.281 1.281 18 C -0.132 4.132 19 C -0.182 4.182 20 C -0.169 4.169 21 C -0.152 4.152 22 C -0.094 4.094 23 H 0.117 0.883 24 H 0.059 0.941 25 H 0.065 0.935 26 H 0.150 0.850 27 H 0.146 0.854 28 H 0.114 0.886 29 H 0.260 0.740 30 H 0.089 0.911 31 H 0.075 0.925 32 H 0.105 0.895 33 H 0.099 0.901 34 H 0.066 0.934 35 H 0.061 0.939 36 H 0.059 0.941 37 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.728 0.071 -5.800 12.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.251 6.251 3 C 0.068 3.932 4 C -0.246 4.246 5 C -0.107 4.107 6 C -0.181 4.181 7 C -0.014 4.014 8 C 0.059 3.941 9 H 0.084 0.916 10 C -0.537 4.537 11 H 0.067 0.933 12 C -0.179 4.179 13 N -0.558 5.558 14 Si 0.770 3.230 15 H -0.192 1.192 16 H -0.212 1.212 17 H -0.207 1.207 18 C -0.150 4.150 19 C -0.219 4.219 20 C -0.206 4.206 21 C -0.152 4.152 22 C -0.151 4.151 23 H 0.136 0.864 24 H 0.078 0.922 25 H 0.083 0.917 26 H 0.168 0.832 27 H 0.164 0.836 28 H 0.132 0.868 29 H 0.069 0.931 30 H 0.107 0.893 31 H 0.094 0.906 32 H 0.123 0.877 33 H 0.118 0.882 34 H 0.085 0.915 35 H 0.080 0.920 36 H 0.077 0.923 37 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -10.545 -0.261 -5.697 11.989 hybrid contribution 0.383 0.493 1.128 1.289 sum -10.163 0.232 -4.569 11.145 Atomic orbital electron populations 1.23289 0.76906 1.05212 1.02027 1.86014 1.23119 1.26931 1.89054 1.18911 0.91432 0.84947 0.97950 1.21270 1.00473 0.91641 1.11200 1.21143 0.93953 0.97862 0.97787 1.20974 0.94096 0.98011 1.05064 1.20387 0.97987 0.91499 0.91530 1.17798 0.86906 0.98569 0.90863 0.91636 1.21192 1.32400 0.95372 1.04742 0.93283 1.25587 0.95753 0.95899 1.00671 1.69987 1.38623 1.13471 1.33715 0.85733 0.77733 0.79360 0.80211 1.19152 1.21248 1.20724 1.22410 0.95058 1.00679 0.96886 1.22999 1.05750 0.96272 0.96920 1.22651 0.94307 1.01406 1.02206 1.19342 0.91256 0.96131 1.08495 1.20492 0.99012 0.94231 1.01371 0.86435 0.92230 0.91665 0.83206 0.83599 0.86818 0.93118 0.89286 0.90642 0.87674 0.88237 0.91498 0.92025 0.92251 0.92142 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.42 9.81 113.37 1.11 1.53 16 2 O -0.34 -11.11 9.44 -92.45 -0.87 -11.98 16 3 C 0.11 4.21 6.66 22.51 0.15 4.36 16 4 C -0.23 -7.29 9.04 22.37 0.20 -7.09 16 5 C -0.09 -2.97 10.04 22.25 0.22 -2.75 16 6 C -0.16 -6.60 8.70 22.28 0.19 -6.40 16 7 C -0.01 -0.61 4.77 -19.88 -0.09 -0.71 16 8 C 0.08 3.79 2.20 -12.29 -0.03 3.76 16 9 H 0.07 3.56 4.13 -2.38 -0.01 3.55 16 10 C -0.50 -26.87 7.56 25.60 0.19 -26.67 16 11 H 0.05 2.64 7.59 -2.91 -0.02 2.61 16 12 C 0.02 1.08 5.45 84.65 0.46 1.54 16 13 N -0.92 -52.72 12.62 21.45 0.27 -52.45 16 14 Si 0.94 44.03 29.54 68.60 2.03 46.06 16 15 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 16 H -0.29 -13.35 7.11 99.48 0.71 -12.64 16 17 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 18 C -0.13 -5.65 4.95 -10.79 -0.05 -5.71 16 19 C -0.18 -6.87 10.18 30.62 0.31 -6.56 16 20 C -0.17 -6.83 10.01 30.62 0.31 -6.53 16 21 C -0.15 -6.60 5.89 -19.77 -0.12 -6.72 16 22 C -0.09 -4.05 9.10 71.24 0.65 -3.40 16 23 H 0.12 1.82 8.14 -2.39 -0.02 1.80 16 24 H 0.06 1.14 7.67 -2.39 -0.02 1.12 16 25 H 0.06 1.17 7.66 -2.39 -0.02 1.15 16 26 H 0.15 3.61 6.30 -2.91 -0.02 3.60 16 27 H 0.15 3.73 8.06 -2.91 -0.02 3.71 16 28 H 0.11 4.55 7.73 -2.91 -0.02 4.52 16 29 H 0.26 14.30 8.31 -92.71 -0.77 13.53 16 30 H 0.09 3.61 7.76 -2.39 -0.02 3.59 16 31 H 0.07 2.99 8.08 -2.39 -0.02 2.97 16 32 H 0.10 3.29 8.14 -2.39 -0.02 3.27 16 33 H 0.10 3.45 8.14 -2.39 -0.02 3.43 16 34 H 0.07 3.12 8.14 -2.39 -0.02 3.10 16 35 H 0.06 2.44 8.14 -2.39 -0.02 2.42 16 36 H 0.06 2.93 6.35 -2.39 -0.02 2.91 16 37 H 0.06 2.40 7.35 -2.39 -0.02 2.39 16 Total: -1.00 -62.26 305.00 5.99 -56.28 By element: Atomic # 1 Polarization: 22.41 SS G_CDS: 1.05 Total: 23.45 kcal Atomic # 6 Polarization: -64.86 SS G_CDS: 3.51 Total: -61.35 kcal Atomic # 7 Polarization: -52.72 SS G_CDS: 0.27 Total: -52.45 kcal Atomic # 8 Polarization: -11.11 SS G_CDS: -0.87 Total: -11.98 kcal Atomic # 14 Polarization: 44.03 SS G_CDS: 2.03 Total: 46.06 kcal Total: -62.26 5.99 -56.28 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260229023.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.042 kcal (2) G-P(sol) polarization free energy of solvation -62.261 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.986 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.276 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds