Wall clock time and date at job start Mon Mar 30 2020 05:35:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38161 * 120.03045 * 2 1 4 4 C 1.38242 * 120.05984 * 179.97438 * 3 2 1 5 5 C 1.50696 * 119.94650 * 179.97438 * 4 3 2 6 6 C 1.38289 * 120.11050 * 359.97438 * 4 3 2 7 7 C 1.50695 * 119.97485 * 179.97438 * 6 4 3 8 8 C 1.50699 * 115.54950 * 100.86310 * 7 6 4 9 9 H 1.08007 * 119.99999 * 144.57155 * 8 7 6 10 10 C 1.37878 * 120.00085 * 324.57718 * 8 7 6 11 11 N 1.31510 * 120.00235 * 351.08810 * 10 8 7 12 12 Si 1.86799 * 119.99983 * 171.08620 * 10 8 7 13 13 H 1.48497 * 109.47226 * 59.99911 * 12 10 8 14 14 H 1.48499 * 109.47399 * 179.97438 * 12 10 8 15 15 H 1.48504 * 109.47294 * 300.00145 * 12 10 8 16 16 C 1.52997 * 117.50067 * 315.16237 * 7 6 4 17 17 C 1.52993 * 117.50403 * 246.53757 * 7 6 4 18 18 C 1.38124 * 120.05339 * 0.02562 * 6 4 3 19 19 C 1.50705 * 120.02556 * 179.72702 * 18 6 4 20 20 C 1.38714 * 120.02654 * 179.97438 * 2 1 3 21 21 O 1.35901 * 120.05878 * 0.04989 * 20 2 1 22 22 H 1.09003 * 109.46836 * 90.00142 * 1 2 3 23 23 H 1.09002 * 109.47198 * 209.99524 * 1 2 3 24 24 H 1.08990 * 109.47120 * 330.00403 * 1 2 3 25 25 H 1.07999 * 119.97101 * 359.97438 * 3 2 1 26 26 H 1.08991 * 109.47692 * 271.09966 * 5 4 3 27 27 H 1.09000 * 109.47008 * 31.10238 * 5 4 3 28 28 H 1.09001 * 109.47228 * 151.09384 * 5 4 3 29 29 H 0.96996 * 120.00109 * 185.00302 * 11 10 8 30 30 H 1.09000 * 117.49751 * 359.97438 * 16 7 6 31 31 H 1.08996 * 117.50306 * 145.01487 * 16 7 6 32 32 H 1.08999 * 117.50294 * 214.97897 * 17 7 6 33 33 H 1.09005 * 117.49567 * 0.02562 * 17 7 6 34 34 H 1.08993 * 109.47437 * 84.19781 * 19 18 6 35 35 H 1.09003 * 109.46909 * 204.20029 * 19 18 6 36 36 H 1.08997 * 109.46875 * 324.19771 * 19 18 6 37 37 H 0.96706 * 113.99605 * 269.95841 * 21 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1961 0.0000 4 6 3.5809 1.1969 0.0005 5 6 4.3324 2.5030 -0.0001 6 6 4.2752 0.0009 0.0016 7 6 5.7822 0.0053 0.0016 8 6 6.4329 -0.2479 1.3371 9 1 7.3550 -0.8076 1.3911 10 6 5.8509 0.2348 2.4901 11 7 4.8301 1.0605 2.4155 12 14 6.5125 -0.2841 4.1581 13 1 7.9351 0.1255 4.2756 14 1 5.7197 0.3694 5.2303 15 1 6.4093 -1.7592 4.2946 16 6 6.4859 0.9688 -0.9561 17 6 6.4903 -0.5341 -1.2427 18 6 3.5886 -1.1976 0.0016 19 6 4.3460 -2.5005 -0.0034 20 6 2.2011 -1.2010 0.0005 21 8 1.5234 -2.3789 0.0000 22 1 -0.3633 0.0000 -1.0277 23 1 -0.3634 -0.8900 0.5138 24 1 -0.3633 0.8899 0.5137 25 1 1.6585 2.1315 -0.0004 26 1 4.4970 2.8271 -1.0276 27 1 3.7508 3.2571 0.5301 28 1 5.2932 2.3696 0.4972 29 1 4.4669 1.4569 3.2229 30 1 5.8588 1.5992 -1.5866 31 1 7.4196 1.4198 -0.6204 32 1 7.4269 -1.0718 -1.0955 33 1 5.8661 -0.8918 -2.0617 34 1 4.6218 -2.7644 1.0175 35 1 3.7167 -3.2849 -0.4241 36 1 5.2471 -2.3946 -0.6074 37 1 1.3271 -2.7201 0.8834 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260247414.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:35:25 Heat of formation + Delta-G solvation = -5.068860 kcal Electronic energy + Delta-G solvation = -18765.758029 eV Core-core repulsion = 16087.565607 eV Total energy + Delta-G solvation = -2678.192422 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.47641 -37.13133 -35.16987 -32.25953 -32.16306 -31.44095 -27.03955 -26.18902 -25.55653 -24.97738 -21.12565 -20.71776 -19.81822 -19.07788 -17.43043 -16.01371 -15.32534 -14.73104 -14.49602 -13.87702 -13.54144 -12.98423 -12.81553 -12.47790 -12.42996 -12.12716 -11.98838 -11.81216 -11.67530 -11.28632 -10.98760 -10.87669 -10.59328 -10.48286 -10.33611 -10.24542 -10.13307 -9.82532 -9.18298 -9.15016 -8.68139 -8.23359 -7.40431 -7.16614 -5.97703 -4.11070 2.33562 2.43320 3.25315 3.31439 3.34052 4.33873 4.60002 4.94566 5.10974 5.49361 5.60156 5.64650 5.92751 5.99043 6.07447 6.13999 6.23315 6.34142 6.40937 6.47814 6.56420 6.57538 6.64051 6.65772 6.68859 6.78887 6.93726 6.94620 7.18958 7.20553 7.30123 7.40581 7.54810 7.60301 7.76295 7.99336 8.01219 8.33479 8.45879 8.83946 9.47040 10.94413 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.019447 B = 0.010262 C = 0.009732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1439.444067 B = 2727.794972 C = 2876.486806 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C -0.132 4.132 3 C -0.132 4.132 4 C -0.018 4.018 5 C -0.096 4.096 6 C 0.033 3.967 7 C 0.089 3.911 8 C -0.491 4.491 9 H 0.062 0.938 10 C 0.076 3.924 11 N -0.860 5.860 12 Si 0.888 3.112 13 H -0.278 1.278 14 H -0.287 1.287 15 H -0.277 1.277 16 C -0.206 4.206 17 C -0.208 4.208 18 C -0.101 4.101 19 C -0.101 4.101 20 C 0.069 3.931 21 O -0.500 6.500 22 H 0.057 0.943 23 H 0.056 0.944 24 H 0.054 0.946 25 H 0.105 0.895 26 H 0.037 0.963 27 H 0.040 0.960 28 H 0.101 0.899 29 H 0.262 0.738 30 H 0.071 0.929 31 H 0.079 0.921 32 H 0.077 0.923 33 H 0.069 0.931 34 H 0.063 0.937 35 H 0.049 0.951 36 H 0.071 0.929 37 H 0.372 0.628 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.552 -1.038 -3.005 5.552 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.133 4.133 3 C -0.150 4.150 4 C -0.018 4.018 5 C -0.152 4.152 6 C 0.033 3.967 7 C 0.089 3.911 8 C -0.528 4.528 9 H 0.080 0.920 10 C -0.129 4.129 11 N -0.495 5.495 12 Si 0.716 3.284 13 H -0.203 1.203 14 H -0.213 1.213 15 H -0.202 1.202 16 C -0.243 4.243 17 C -0.245 4.245 18 C -0.102 4.102 19 C -0.157 4.157 20 C 0.025 3.975 21 O -0.308 6.308 22 H 0.076 0.924 23 H 0.075 0.925 24 H 0.073 0.927 25 H 0.124 0.876 26 H 0.056 0.944 27 H 0.059 0.941 28 H 0.120 0.880 29 H 0.072 0.928 30 H 0.090 0.910 31 H 0.097 0.903 32 H 0.095 0.905 33 H 0.087 0.913 34 H 0.082 0.918 35 H 0.068 0.932 36 H 0.090 0.910 37 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges -4.703 -0.909 -3.484 5.923 hybrid contribution 0.225 -0.228 1.636 1.668 sum -4.478 -1.137 -1.847 4.976 Atomic orbital electron populations 1.20476 0.92311 1.01273 1.01079 1.19763 0.95192 0.92831 1.05484 1.20528 0.93928 0.95887 1.04705 1.19390 0.91995 0.95396 0.95021 1.20819 1.02866 0.93035 0.98508 1.18765 0.94360 0.90410 0.93192 1.17623 0.86995 0.96951 0.89563 1.20379 1.08101 1.35858 0.88485 0.92024 1.24962 0.94444 0.94712 0.98828 1.70021 1.23214 1.27851 1.28382 0.86715 0.78878 0.79077 0.83725 1.20311 1.21308 1.20208 1.23253 1.03195 0.91288 1.06597 1.22959 1.02434 0.97231 1.01859 1.19813 0.91967 0.95986 1.02396 1.20575 0.99413 0.93569 1.02155 1.17896 0.89263 0.83991 1.06303 1.84760 1.76738 1.36981 1.32345 0.92424 0.92509 0.92691 0.87643 0.94419 0.94070 0.88004 0.92790 0.91034 0.90295 0.90468 0.91293 0.91840 0.93244 0.91005 0.77473 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.49 9.79 36.01 0.35 -1.14 16 2 C -0.13 -2.62 5.89 -104.47 -0.62 -3.23 16 3 C -0.13 -2.72 9.35 -39.61 -0.37 -3.09 16 4 C -0.02 -0.40 4.50 -104.60 -0.47 -0.87 16 5 C -0.10 -2.02 7.49 36.00 0.27 -1.75 16 6 C 0.03 0.78 3.70 -104.65 -0.39 0.39 16 7 C 0.09 2.10 0.44 -156.82 -0.07 2.03 16 8 C -0.49 -12.62 8.98 -34.44 -0.31 -12.93 16 9 H 0.06 1.59 7.83 -52.48 -0.41 1.18 16 10 C 0.08 1.94 5.27 -17.82 -0.09 1.84 16 11 N -0.86 -22.32 8.74 55.43 0.48 -21.83 16 12 Si 0.89 20.32 29.55 -169.99 -5.02 15.29 16 13 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 14 H -0.29 -6.61 7.11 56.52 0.40 -6.20 16 15 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 16 C -0.21 -4.44 7.82 -26.73 -0.21 -4.65 16 17 C -0.21 -4.39 8.03 -26.74 -0.21 -4.60 16 18 C -0.10 -2.26 5.89 -104.47 -0.62 -2.87 16 19 C -0.10 -2.05 9.28 36.01 0.33 -1.72 16 20 C 0.07 1.43 6.65 -39.22 -0.26 1.17 16 21 O -0.50 -8.95 11.50 -19.43 -0.22 -9.18 16 22 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 23 H 0.06 0.83 7.53 -51.93 -0.39 0.44 16 24 H 0.05 0.79 8.09 -51.93 -0.42 0.37 16 25 H 0.11 1.94 8.06 -52.49 -0.42 1.51 16 26 H 0.04 0.71 7.08 -51.93 -0.37 0.35 16 27 H 0.04 0.81 8.09 -51.93 -0.42 0.39 16 28 H 0.10 2.40 5.05 -51.93 -0.26 2.13 16 29 H 0.26 6.70 8.32 -40.82 -0.34 6.36 16 30 H 0.07 1.47 6.17 -51.93 -0.32 1.15 16 31 H 0.08 1.70 8.14 -51.93 -0.42 1.28 16 32 H 0.08 1.58 8.14 -51.93 -0.42 1.15 16 33 H 0.07 1.39 7.98 -51.93 -0.41 0.98 16 34 H 0.06 1.33 8.14 -51.93 -0.42 0.90 16 35 H 0.05 0.91 7.36 -51.93 -0.38 0.53 16 36 H 0.07 1.46 5.50 -51.93 -0.29 1.17 16 37 H 0.37 5.19 9.06 45.56 0.41 5.60 16 LS Contribution 292.88 15.07 4.41 4.41 Total: -1.00 -27.35 292.88 -7.52 -34.87 By element: Atomic # 1 Polarization: 12.36 SS G_CDS: -4.51 Total: 7.85 kcal Atomic # 6 Polarization: -28.76 SS G_CDS: -2.66 Total: -31.42 kcal Atomic # 7 Polarization: -22.32 SS G_CDS: 0.48 Total: -21.83 kcal Atomic # 8 Polarization: -8.95 SS G_CDS: -0.22 Total: -9.18 kcal Atomic # 14 Polarization: 20.32 SS G_CDS: -5.02 Total: 15.29 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -27.35 -7.52 -34.87 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260247414.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.799 kcal (2) G-P(sol) polarization free energy of solvation -27.349 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.449 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.518 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.867 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.069 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds