Wall clock time and date at job start Mon Mar 30 2020 05:35:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38161 * 120.03045 * 2 1 4 4 C 1.38242 * 120.05984 * 179.97438 * 3 2 1 5 5 C 1.50696 * 119.94650 * 179.97438 * 4 3 2 6 6 C 1.38289 * 120.11050 * 359.97438 * 4 3 2 7 7 C 1.50695 * 119.97485 * 179.97438 * 6 4 3 8 8 C 1.50699 * 115.54950 * 100.86310 * 7 6 4 9 9 H 1.08007 * 119.99999 * 144.57155 * 8 7 6 10 10 C 1.37878 * 120.00085 * 324.57718 * 8 7 6 11 11 N 1.31510 * 120.00235 * 351.08810 * 10 8 7 12 12 Si 1.86799 * 119.99983 * 171.08620 * 10 8 7 13 13 H 1.48497 * 109.47226 * 59.99911 * 12 10 8 14 14 H 1.48499 * 109.47399 * 179.97438 * 12 10 8 15 15 H 1.48504 * 109.47294 * 300.00145 * 12 10 8 16 16 C 1.52997 * 117.50067 * 315.16237 * 7 6 4 17 17 C 1.52993 * 117.50403 * 246.53757 * 7 6 4 18 18 C 1.38124 * 120.05339 * 0.02562 * 6 4 3 19 19 C 1.50705 * 120.02556 * 179.72702 * 18 6 4 20 20 C 1.38714 * 120.02654 * 179.97438 * 2 1 3 21 21 O 1.35901 * 120.05878 * 0.04989 * 20 2 1 22 22 H 1.09003 * 109.46836 * 90.00142 * 1 2 3 23 23 H 1.09002 * 109.47198 * 209.99524 * 1 2 3 24 24 H 1.08990 * 109.47120 * 330.00403 * 1 2 3 25 25 H 1.07999 * 119.97101 * 359.97438 * 3 2 1 26 26 H 1.08991 * 109.47692 * 271.09966 * 5 4 3 27 27 H 1.09000 * 109.47008 * 31.10238 * 5 4 3 28 28 H 1.09001 * 109.47228 * 151.09384 * 5 4 3 29 29 H 0.96996 * 120.00109 * 185.00302 * 11 10 8 30 30 H 1.09000 * 117.49751 * 359.97438 * 16 7 6 31 31 H 1.08996 * 117.50306 * 145.01487 * 16 7 6 32 32 H 1.08999 * 117.50294 * 214.97897 * 17 7 6 33 33 H 1.09005 * 117.49567 * 0.02562 * 17 7 6 34 34 H 1.08993 * 109.47437 * 84.19781 * 19 18 6 35 35 H 1.09003 * 109.46909 * 204.20029 * 19 18 6 36 36 H 1.08997 * 109.46875 * 324.19771 * 19 18 6 37 37 H 0.96706 * 113.99605 * 269.95841 * 21 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1961 0.0000 4 6 3.5809 1.1969 0.0005 5 6 4.3324 2.5030 -0.0001 6 6 4.2752 0.0009 0.0016 7 6 5.7822 0.0053 0.0016 8 6 6.4329 -0.2479 1.3371 9 1 7.3550 -0.8076 1.3911 10 6 5.8509 0.2348 2.4901 11 7 4.8301 1.0605 2.4155 12 14 6.5125 -0.2841 4.1581 13 1 7.9351 0.1255 4.2756 14 1 5.7197 0.3694 5.2303 15 1 6.4093 -1.7592 4.2946 16 6 6.4859 0.9688 -0.9561 17 6 6.4903 -0.5341 -1.2427 18 6 3.5886 -1.1976 0.0016 19 6 4.3460 -2.5005 -0.0034 20 6 2.2011 -1.2010 0.0005 21 8 1.5234 -2.3789 0.0000 22 1 -0.3633 0.0000 -1.0277 23 1 -0.3634 -0.8900 0.5138 24 1 -0.3633 0.8899 0.5137 25 1 1.6585 2.1315 -0.0004 26 1 4.4970 2.8271 -1.0276 27 1 3.7508 3.2571 0.5301 28 1 5.2932 2.3696 0.4972 29 1 4.4669 1.4569 3.2229 30 1 5.8588 1.5992 -1.5866 31 1 7.4196 1.4198 -0.6204 32 1 7.4269 -1.0718 -1.0955 33 1 5.8661 -0.8918 -2.0617 34 1 4.6218 -2.7644 1.0175 35 1 3.7167 -3.2849 -0.4241 36 1 5.2471 -2.3946 -0.6074 37 1 1.3271 -2.7201 0.8834 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260247414.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:35:24 Heat of formation + Delta-G solvation = -19.083813 kcal Electronic energy + Delta-G solvation = -18766.365763 eV Core-core repulsion = 16087.565607 eV Total energy + Delta-G solvation = -2678.800156 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.05723 -38.72161 -36.73624 -34.09637 -33.80486 -32.97926 -28.55420 -27.89382 -27.22042 -26.65129 -22.83263 -22.34925 -21.40701 -20.73149 -19.08926 -17.71550 -16.89342 -16.55718 -16.11140 -15.59306 -15.07959 -14.68271 -14.29964 -14.05466 -13.88735 -13.73035 -13.48454 -13.39905 -13.29298 -12.84216 -12.80215 -12.61275 -12.32369 -12.21987 -12.03249 -11.87280 -11.74449 -11.39753 -10.96888 -10.89004 -10.40783 -10.06138 -9.01970 -8.79791 -7.86841 -6.07395 0.74407 0.83836 1.41953 1.45224 1.49903 2.44846 3.02660 3.08479 3.60604 3.71844 4.15298 4.19503 4.31282 4.47472 4.61833 4.63457 4.81237 4.85472 4.87589 4.88665 4.94215 4.99799 5.01107 5.03753 5.13986 5.19776 5.24311 5.33648 5.56670 5.60104 5.63250 5.79807 5.81531 5.88939 5.99410 6.34120 6.40823 6.48344 6.88610 7.05345 7.50842 8.99028 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.019447 B = 0.010262 C = 0.009732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1439.444067 B = 2727.794972 C = 2876.486806 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C -0.136 4.136 3 C -0.139 4.139 4 C -0.039 4.039 5 C -0.087 4.087 6 C 0.011 3.989 7 C 0.070 3.930 8 C -0.508 4.508 9 H 0.050 0.950 10 C 0.041 3.959 11 N -0.868 5.868 12 Si 0.936 3.064 13 H -0.277 1.277 14 H -0.288 1.288 15 H -0.278 1.278 16 C -0.198 4.198 17 C -0.195 4.195 18 C -0.127 4.127 19 C -0.091 4.091 20 C 0.066 3.934 21 O -0.499 6.499 22 H 0.070 0.930 23 H 0.067 0.933 24 H 0.069 0.931 25 H 0.126 0.874 26 H 0.053 0.947 27 H 0.046 0.954 28 H 0.074 0.926 29 H 0.257 0.743 30 H 0.080 0.920 31 H 0.073 0.927 32 H 0.080 0.920 33 H 0.078 0.922 34 H 0.050 0.950 35 H 0.065 0.935 36 H 0.066 0.934 37 H 0.391 0.609 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.884 -1.241 -3.247 6.834 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.137 4.137 3 C -0.157 4.157 4 C -0.039 4.039 5 C -0.143 4.143 6 C 0.011 3.989 7 C 0.069 3.931 8 C -0.545 4.545 9 H 0.068 0.932 10 C -0.162 4.162 11 N -0.503 5.503 12 Si 0.763 3.237 13 H -0.202 1.202 14 H -0.213 1.213 15 H -0.204 1.204 16 C -0.236 4.236 17 C -0.232 4.232 18 C -0.127 4.127 19 C -0.148 4.148 20 C 0.022 3.978 21 O -0.309 6.309 22 H 0.088 0.912 23 H 0.086 0.914 24 H 0.088 0.912 25 H 0.144 0.856 26 H 0.072 0.928 27 H 0.065 0.935 28 H 0.093 0.907 29 H 0.066 0.934 30 H 0.099 0.901 31 H 0.092 0.908 32 H 0.099 0.901 33 H 0.096 0.904 34 H 0.069 0.931 35 H 0.084 0.916 36 H 0.085 0.915 37 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges -6.033 -1.121 -3.722 7.177 hybrid contribution 0.610 -0.197 1.689 1.807 sum -5.423 -1.318 -2.033 5.939 Atomic orbital electron populations 1.20523 0.89362 1.02617 1.02260 1.20202 0.97416 0.92152 1.03906 1.20814 0.93481 0.97250 1.04195 1.19612 0.93024 0.95425 0.95860 1.20685 1.01404 0.93026 0.99201 1.18847 0.94155 0.91278 0.94636 1.17628 0.87685 0.98510 0.89234 1.20550 1.07994 1.35860 0.90074 0.93216 1.25443 0.94931 0.94909 1.00960 1.70151 1.23690 1.28190 1.28297 0.85966 0.78317 0.78429 0.80956 1.20220 1.21324 1.20404 1.23185 1.02749 0.91663 1.06020 1.22949 1.02290 0.96886 1.01047 1.20121 0.93137 0.96248 1.03223 1.20481 0.99398 0.93570 1.01314 1.18005 0.88957 0.85183 1.05697 1.84699 1.76172 1.36031 1.34006 0.91177 0.91374 0.91205 0.85645 0.92815 0.93467 0.90714 0.93356 0.90116 0.90841 0.90147 0.90357 0.93132 0.91561 0.91526 0.75265 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.56 9.79 71.24 0.70 -1.87 16 2 C -0.14 -5.08 5.89 -19.77 -0.12 -5.20 16 3 C -0.14 -5.49 9.35 22.25 0.21 -5.29 16 4 C -0.04 -1.72 4.50 -19.85 -0.09 -1.80 16 5 C -0.09 -3.60 7.49 71.23 0.53 -3.07 16 6 C 0.01 0.52 3.70 -19.88 -0.07 0.45 16 7 C 0.07 3.29 0.44 -53.68 -0.02 3.27 16 8 C -0.51 -26.35 8.98 25.60 0.23 -26.12 16 9 H 0.05 2.61 7.83 -2.91 -0.02 2.59 16 10 C 0.04 2.11 5.27 84.66 0.45 2.56 16 11 N -0.87 -45.20 8.74 21.45 0.19 -45.01 16 12 Si 0.94 41.91 29.55 68.60 2.03 43.94 16 13 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 14 H -0.29 -12.78 7.11 99.48 0.71 -12.07 16 15 H -0.28 -12.43 7.11 99.48 0.71 -11.73 16 16 C -0.20 -8.54 7.82 30.59 0.24 -8.30 16 17 C -0.19 -8.14 8.03 30.59 0.25 -7.89 16 18 C -0.13 -5.56 5.89 -19.77 -0.12 -5.67 16 19 C -0.09 -3.66 9.28 71.24 0.66 -3.00 16 20 C 0.07 2.60 6.65 22.51 0.15 2.75 16 21 O -0.50 -16.60 11.50 -92.43 -1.06 -17.66 16 22 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 23 H 0.07 1.76 7.53 -2.39 -0.02 1.74 16 24 H 0.07 1.76 8.09 -2.39 -0.02 1.74 16 25 H 0.13 4.31 8.06 -2.91 -0.02 4.29 16 26 H 0.05 1.99 7.08 -2.39 -0.02 1.97 16 27 H 0.05 1.83 8.09 -2.39 -0.02 1.81 16 28 H 0.07 3.53 5.05 -2.39 -0.01 3.51 16 29 H 0.26 13.17 8.32 -92.71 -0.77 12.39 16 30 H 0.08 3.28 6.17 -2.39 -0.01 3.26 16 31 H 0.07 3.18 8.14 -2.39 -0.02 3.17 16 32 H 0.08 3.26 8.14 -2.39 -0.02 3.24 16 33 H 0.08 3.10 7.98 -2.38 -0.02 3.08 16 34 H 0.05 2.11 8.14 -2.39 -0.02 2.09 16 35 H 0.07 2.35 7.36 -2.39 -0.02 2.33 16 36 H 0.07 2.69 5.50 -2.39 -0.01 2.67 16 37 H 0.39 9.87 9.06 -74.05 -0.67 9.20 16 Total: -1.00 -56.91 292.88 4.55 -52.36 By element: Atomic # 1 Polarization: 25.16 SS G_CDS: 0.40 Total: 25.57 kcal Atomic # 6 Polarization: -62.18 SS G_CDS: 2.99 Total: -59.19 kcal Atomic # 7 Polarization: -45.20 SS G_CDS: 0.19 Total: -45.01 kcal Atomic # 8 Polarization: -16.60 SS G_CDS: -1.06 Total: -17.66 kcal Atomic # 14 Polarization: 41.91 SS G_CDS: 2.03 Total: 43.94 kcal Total: -56.91 4.55 -52.36 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260247414.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.276 kcal (2) G-P(sol) polarization free energy of solvation -56.908 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.632 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.360 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.084 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds